Moyle, P. B. Inland fishes of California (University of California Press, 2002).
Moyle, P. B., Brown, L. R., Durand, J. R. & Hobbs, J. A. Delta smelt: Life history and decline of a once-abundant species in the San Francisco Estuary. San Franc. Estuary Watershed Sci. 14, 1–28 (2016).
U. S. Fish and Wildlife Service. Endangered and threatened wildlife and plants: Determination of threatened status of the Delta Smelt. Federal Regist. 58, 12854–12864 (1993).
California Department of Fish and Wildlife. State and federally listed endangered and threatened animals of California. California Department of Fish and Wildlife, (The Natural Resources Agency, North Highlands, 2017).
Moyle, P. B. & Bennett, W. A. The future of the Delta ecosystem and its fish, Technical Appendix D. Comparing Futures for the Sacramento-San Joaquin Delta. San Francisco (CA): Public Policy Institute of California (2008).
Lund, J. R. et al. Comparing futures for the Sacramento-San Joaquin Delta (Public Policy Institute of California, 2010).
Google Scholar
Moyle, P. B., Bennett, W. A., Fleenor, W. E. & Lund, J. R. Habitat variability and complexity in the upper San Francisco Estuary. San Franc. Estuary Watershed Sci. 8, 1–24 (2010).
Feyrer, F., Newman, K., Nobriga, M. & Sommer, T. Modeling the effects of future outflow on the abiotic habitat of an imperiled estuarine fish. Estuaries Coast. 34, 120–128 (2011).
Google Scholar
Cloern, J. E. & Jassby, A. D. Drivers of change in estuarine-coastal ecosystems: Discoveries from four decades of study in San Francisco bay. Rev. Geophys. 50, RG4001 (2012).
Google Scholar
Moyle, P. B., Hobbs, J. A. & Durand, J. R. Delta Smelt and water politics in California. Fisheries 43, 42–60 (2018).
Google Scholar
Mahardja, B. et al. Resistance and resilience of pelagic and littoral fishes to drought in the San Francisco estuary. Ecol. Appl. 31, e02243 (2021).
Google Scholar
Börk, K., Moyle, P., Durand, J., Hung, T.-C. & Rypel, A. L. Small populations in jeopardy: Delta smelt case study. Environ. Law Reporter 50, 10714–10722 (2020).
Moyle, P. B. 2021. Experimental habitats for hatchery Delta Smelt. California WaterBlog https://californiawaterblog.com/2021/07/25/experimental-habitats-for-hatchery-delta-smelt/ (2021).
Jeffries, K. M. et al. Effects of high temperatures on threatened estuarine fishes during periods of extreme drought. J. Exp. Biol. 219, 1705–1716 (2016).
Google Scholar
Bashevkin, S. M. & Mahardja, B. Seasonally variable relationships between surface water temperature and inflow in the upper San Francisco Estuary. Limnol. Oceanogr. 67, 684–702 (2022).
Google Scholar
Brown, L. R. et al. Coupled downscaled climate models and ecophysiological metrics forecast habitat compression for an endangered estuarine fish. PLoS ONE 11, e0146724 (2015).
Google Scholar
Kurobe, T. et al. Reproductive strategy of Delta Smelt Hypomesus transpacificus and impacts of drought on reproductive performance. PLoS ONE 17, e0264731 (2022).
Google Scholar
Lewis, L. S. et al. Otolith-based approaches indicate strong effects of environmental variation on growth of a critically endangered estuarine fish. Mar. Ecol. Prog. 676, 37–56 (2021).
Google Scholar
Hammock, B. G. et al. Patterns and predictors of condition indices in a critically endangered fish. Hydrobiologia 849, 675–695 (2021).
Google Scholar
Bennett, W. A. Critical assessment of the delta smelt population in the San Francisco Estuary, California. San Franc. Estuary Watershed Sci. 3(1), (2005).
Komoroske, L. M. et al. Ontogeny influences sensitivity to climate change stressors in an endangered fish. Conserv. Physiol. 2, cou008 (2014).
Google Scholar
Moyle, P. B., Herbold, B., Stevens, D. E. & Miller, L. W. Life history of delta smelt in the Sacramento-San Joaquin Estuary California. Trans. Am. Fish. Soc. 121, 67–77 (1992).
Google Scholar
Kimmerer, W. J., MacWilliams, M. L. & Gross, E. S. Variation of fish habitat and extent of the low-salinity zone with freshwater flow in the San Francisco Estuary. San Franc. Estuary Watershed Sci. 11 (2013).
Sommer, T. & Meija, F. A place to call home: A synthesis of delta smelt habitats in the upper San Francisco Estuary. San Franc. Estuary Watershed Sci. 9 (2013).
Hammock, B. G. et al. Foraging and metabolic consequences of semi-anadromy for an endangered estuarine fish. PLoS ONE 12, e0173497 (2017).
Google Scholar
Cox, D. Effects of three heating rates on the critical thermal maximum of Bluegill. In W Gibbons, R Sharitz, eds, Thermal Ecology. National Technical Information Service, 158–163 (Springfield, IL, 1974).
Beitinger, T. L., Bennett, W. A. & McCauley, R. W. Temperature tolerances of North American freshwater fishes exposed to dynamic changes in temperature. Environ. Biol. Fishes 58, 237–275 (2000).
Google Scholar
Davis, B. E. et al. Sensitivities of an endemic, endangered California smelt and two non-native fishes to serial increases in temperature and salinity: Implications for shifting community structure with climate change. Conserv. Physiol. 7, coy076 (2019).
Google Scholar
Swanson, C., Reid, T., Young, P. S. & Cech, J. J. Jr. Comparative environmental tolerances of threatened delta smelt (Hypomesus transpacificus) and introduced wakasagi (H. nipponensis) in an altered California estuary. Oecologia 123, 384–390 (2000).
Google Scholar
Hammock, B. G., Hobbs, J. A., Slater, S. B., Acuña, S. & Teh, S. J. Contaminant and food limitation stress in an endangered estuarine fish. Sci. Total Environ. 532, 316–326 (2015).
Google Scholar
Hamilton, S. A. & Murphy, D. D. Analysis of limiting factors across the life cycle of delta smelt (Hypomesus transpacificus). Environ. Manage. 62, 365–382 (2018).
Google Scholar
Feyrer, F., Nobriga, M. L. & Sommer, T. R. Multidecadal trends for three declining fish species: Habitat patterns and mechanisms in the San Francisco Estuary, California USA. Can. J. Fish. Aquat. Sci. 64, 723–734 (2007).
Google Scholar
Nobriga, M. L., Sommer, T. R., Feyrer, F. & Fleming, K. Long-term trends in summertime habitat suitability for delta smelt (Hypomesus transpacificus). San Franc. Estuary Watershed Sci. 6(1), (2008).
Brown, L. R. et al. Implications for future survival of delta smelt from four climate change scenarios for the Sacramento-San Joaquin Delta California. Estuaries Coast. 36, 754–774 (2013).
Google Scholar
Moyle, P., Kiernan, J. D., Crain, P. K. & Quiñones, R. M. Climate change vulnerability of native and alien freshwater fishes of California: A systematic assessment approach. PLoS ONE 8, e63883 (2013).
Google Scholar
Hobbs, J. A., Lewis, L. S., Willmes, M., Denney, C. & Bush, E. Complex life histories discovered in a critically endangered fish. Sci. Rep. 9, 16772 (2019).
Google Scholar
Bennett, W. A. & Burau, J. R. Riders on the storm: Selective tidal movements facilitate the spawning migration of threatened Delta Smelt in the San Francisco Estuary. Estuaries Coast. 38, 826–835 (2015).
Google Scholar
Hirvonen, H., Ranta, E., Piironen, J., Laurila, A. & Peuhkuri, N. Behavioral responses of naive Arctic charr to chemical cues from salmonid and non-salmonid fish. Oikos 88, 191–199 (2000).
Google Scholar
Correia, A. M., Bandeira, N. & Anastacio, P. M. Influence of chemical and visual stimuli in food-search behaviour of Procambarus clarkii under clear conditions. Mar. Freshw. Behav. Physiol. 40, 189–194 (2007).
Google Scholar
Nay, T. J. et al. Habitat complexity influences selection of thermal environment in a common coral reef fish. Conserv. Physiol. 8, coaa070 (2020).
Google Scholar
Horning, W. B. & Weber, C. I. Short-term methods for estimating the chronic toxicity of effluents and receiving waters to freshwater organisms. EPA/600/4-85/014, 58–75 (1985).
Lindberg, J. et al. Aquaculture methods for a genetically managed population of endangered delta smelt. N. Am. J. Aquac. 75, 186–196 (2013).
Google Scholar
Ferrari, M. C. O. et al. Effects of turbidity and an invasive waterweed on predation by introduced largemouth bass. Environ. Biol. Fishes 97, 79–90 (2014).
Google Scholar
Petersen, M. F. & Steffensen, T. F. Preferred temperature of juvenile Atlantic cod Gadus morhua with different haemoglobin genotypes at normoxia and moderate hypoxia. J. Exp. Biol. 206, 359–364 (2003).
Google Scholar
Meager, J. J. & Utne-Palm, A. C. Effect of turbidity on habitat preference of juvenile Atlantic cod Gadus morhua. Environ. Biol. Fishes 81, 149–155 (2008).
Google Scholar
Serrano, X., Grosell, M. & Serafy, J. E. Salinity selection and preference of the grey snapper Lutjanus griseus: Field and laboratory observations. J. Fish Biol. 76, 1592–1608 (2010).
Google Scholar
Stol, J. A., Svendsen, J. C. & Enders, E. C. Determining the thermal preferences of Carmine Shiner (Notropis percobromus) and Lake Sturgeon (Acipenser fulvescens) using an automated shuttlebox. Can. Tech. Rep. Fish. Aquat. Sci. 3038 (2013).
Hammock, B. G. et al. The health and condition responses of delta smelt to fasting: A time series experiment. PLoS ONE 15, e0239358 (2020).
Google Scholar
McElreath, R. Statistical rethinking: A Bayesian course with examples in R and Stan. (CRC Press, 2016.
R Core Team. R: A language and environment for statistical computing (2021).
Bates, D., Maechler, M. & Bolker, B. lme4: Linear mixed-effects models using S4 classes (2012).
Korner-Nievergelt, F. et al. Bayesian data analysis in ecology using linear models with R (Elsevier, 2015).
Gilliam, J. F. & Fraser, D. F. Habitat selection under predation hazard: Test of a model with foraging minnows. Ecology 68, 1856–1862 (1987).
Google Scholar
Metcalfe, N. B., Fraser, N. H. & Burns, M. D. Food availability and the nocturnal vs. diurnal foraging trade-off in juvenile salmon. J. Anim. Ecol. 68, 371–381 (1999).
Google Scholar
Walters, C. J. & Juanes, F. Recruitment limitation as a consequence of natural selection for use of restricted feeding habitats and predation risk taking by juvenile fishes. Can. J. Fish. Aquat. Sci. 50, 2058–2070 (1993).
Google Scholar
Bull, H. O. Studies on conditioned responses in fishes. Part VII. Temperature perception in teleosts. J. Mar. Biol. Assoc. U. K. 21, 1–27 (1936).
Google Scholar
Steffel, S., Magnuson, J. J., Dizon, A. E. & Neill, W. H. Temperature discrimination by captive free-swimming tuna Euthynnus affinis. Trans. Am. Fish. Soc. 105, 588–591 (1976).
Google Scholar
Dülger, N. et al. Thermal tolerance of European Sea bass (Dicentrarchus labrax) juveniles acclimated to three temperature levels. J. Therm. Biol. 37, 79–82 (2012).
Google Scholar
Hung, T.-C. et al. A pilot study of the performance of captive-reared delta smelt Hypomesus transpacificus in a semi-natural environment. J. Fish Biol. 95, 1517–1522 (2019).
Google Scholar
Navarro, I. & Gutiérrez, J. Fasting and starvation. Biochemistry and molecular biology of fishes. 4: Elsevier. p. 393–434 (1995).
Finger, A. J. et al. A conservation hatchery population of Delta Smelt shows evidence of genetic adaptation to captivity after 9 generations. J. Hered. 109, 689–699 (2018).
Google Scholar
Middaugh, D. P., Davis, W. R. & Yokum, R. L. The response of larval fish, Leiostomus xanthurus, to environmental stress following sublethal cadmium exposure. Contrib. Mar. Sci. 19, 13–19 (1975).
Google Scholar
Stevens, E. D. & Sutterlin, A. M. Heat transfer between fish and ambient water. J. Exp. Biol. 65, 131–145 (1976).
Google Scholar
Beitinger, T. L., Thommes, M. M. & Spigarelli, S. A. Relative roles of conduction and convection in the body temperature change of gizzard shad Dorosoma cepedianum. Comp. Biochem. Physiol. 57A, 275–279 (1977).
Google Scholar
Neill, W. H. & Magnuson, J. J. Distributional ecology and behavioral thermoregulation of fishes in relation to heated effluents from a power plant at Lake Monona Wisconsin. Trans. Am. Fish. Soc. 103, 663–710 (1974).
Google Scholar
Coutant, C. C. Temperature selection by fish–a factor in power plant impact assessments. pp. 575–597. In: Environmental Effects of Cooling Systems at Nuclear Power Plants, Internat. Atomic Energy Agency, Vienna (1975).
Richards, F. P., Reynolds, W. W. & McCauley, R. W. Temperature preference studies in environmental impact assessment: An overview with procedural recommendations. J. Fish. Res. Board Can. 34, 728–761 (1977).
Google Scholar
Swanson, C., Mager, R. C., Doroshov, S. I. & Cech, J. J. Jr. Use of salts, anesthetics, and polymers to minimize handling and transport mortality in delta smelt. Trans. Am. Fish. Soc. 125, 326–329 (1996).
Google Scholar
Komoroske, L. M. et al. Sublethal salinity stress contributes to habitat limitation in an endangered estuarine fish. Evol. Appl. 9, 963–981 (2016).
Google Scholar
Feyrer, F., Sommer, T. & Harrell, W. Importance of flood dynamics versus intrinsic physical habitat in structuring fish communities: Evidence from two adjacent engineered floodplains on the Sacramento river California. N. Am. J. Aquac. 26, 408–417 (2006).
Source: Ecology - nature.com