Tittensor, D. P. et al. Global patterns and predictors of marine biodiversity across taxa. Nature 466, 1098–U1107 (2010).
Gaston K., Blackburn T. Pattern and Process in Macroecology (Blackwell Science, 2009).
Oberdorff, T. et al. Global and regional patterns in riverine fish species richness: a review. Int. J. Ecol. 2011, ID 967631 (2011).
Pellissier, L. et al. Quaternary coral reef refugia preserved fish diversity. Science 344, 1016–1019 (2014).
Ellegren, H. & Galtier, N. Determinants of genetic diversity. Nat. Rev. Genet. 17, 422–433 (2016).
National Academy of Sciences. In the Light of Evolution: Volume X: Comparative Phylogeography Avise, J. C., Ayala, F. J. eds (The National Academies Press, Washington, 2017).
Manel, S., schwartz, M., Luikart, G. & Taberlet, P. Landscape genetics: combining landscape ecology and population genetics. Trends Ecol. Evol. 18, 157–206 (2003).
Manel, S. et al. Long-distance benefits of marine reserves: myth or reality? Trends Ecol. Evol. 34, 342–354 (2019).
Leigh, D. M., Hendry, A. P., Vázquez-Domínguez, E. & Friesen, V. L. Estimated six percent loss of genetic variation in wild populations since the industrial revolution. Evol. Appl. 12, 1505–11512 (2019).
Bellard, C., Bertelsmeier, C., Leadley, P., Thuiller, W. & Courchamp, F. Impacts of climate change on the future of biodiversity. Ecol. Lett. 15, 365–377 (2012).
Wiens J. J. Climate-related local extinctions are already widespread among plant and animal species. PLoS Biol. 14, e2001104 (2016).
Hughes, J. B., Daily, G. C. & Ehrlich, P. R. Population diversity: its extent and extinction. Science 278, 689 (1997).
Hoffmann, A. A., Sgro, C. M. & Kristensen, T. N. Revisiting adaptive potential, population size, and conservation. Trends Ecol. Evol. 32, 506–517 (2017).
Paz-Vinas, I. & Blanchet, S. Dendritic connectivity shapes spatial patterns of genetic diversity: a simulation-based study. J. Evol. Biol. 28, 986–994 (2015).
Paz-Vinas I. et al. Systematic conservation planning for intraspecific genetic diversity. Proc. R. Soc. B Biol. Sci. 285, 20172746 (2018).
Devictor, V. et al. Spatial mismatch and congruence between taxonomic, phylogenetic and functional diversity: the need for integrative conservation strategies in a changing world. Ecol. Lett. 13, 1030–1040 (2010).
Blanchet, S., Prunier, J. G. & De Kort, H. Time to go bigger: emerging patterns in macrogenetics. Trends Genet. 33, 579–580 (2017).
Miraldo, A. et al. An Anthropocene map of genetic diversity. Science 353, 1532–1535 (2016).
Vellend, M. & Geber, M. A. Connections between species diversity and genetic diversity. Ecol. Lett. 8, 767–781 (2005).
Vellend, M. Species diversity and genetic diversity: parallel processes and correlated patterns. Am. Nat. 166, 199–215 (2005).
Laroche, F., Jarne, P., Lamy, T., David, P. & Massol, F. A neutral theory for interpreting correlations between species and genetic diversity in communities. Am. Nat. 185, 59–69 (2015).
Stewart, L. et al. The regional species richness and genetic diversity of Arctic vegetation reflect both past glaciations and current climate. Glob. Ecol. Biogeogr. 25, 430–442 (2016).
Fine, P. V. A. Ecological and evolutionary drivers of geographic variation in species diversity. Annu. Rev. Ecol. Evol. Syst. 46, 369–392 (2015).
Mittelbach, G. G. et al. Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. Ecol. Lett. 10, 315–331 (2007).
Storch D., Bohdalková E., Okie J. The more-individuals hypothesis revisited: The role of community abundance in species richness regulation and the productivity-diversity relationship. Ecol. Lett. 21, 920–937 (2017).
Currie, D. J. et al. Predictions and tests of climate-based hypotheses of broad-scale variation in taxonomic richness. Ecol. Lett. 7, 1121–1134 (2004).
Grosberg, R. K., Vermeij, G. J. & Wainwright, P. C. Biodiversity in water and on land. Curr. Biol. 22, R900–R903 (2012).
Kovalenko, K. E., Thomaz, S. M. & Warfe, D. M. Habitat complexity: approaches and future directions. Hydrobiologia 685, 1–17 (2012).
Bertin, A. et al. Genetic variation of loci potentially under selection confounds species-genetic diversity correlations in a fragmented habitat. Mol. Ecol. 26, 431–443 (2017).
Willig, R., Kaufman, M. & Stevens, D. R. Latitudinal gradients of biodiversity: pattern, process, scale, and synthesis. Annu. Rev. Ecol. Evol. Syst. 20, 273–309 (2003).
Gratton, P. et al. Which latitudinal gradients for genetic diversity? Trends Ecol. Evol. 32, 724–726 (2017).
Rabosky, D. L. et al. An inverse latitudinal gradient in speciation rate for marine fishes. Nature 559, 392–395 (2018).
Hughes, L. C. et al. Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data. Proc. Natl Acad. Sci. USA 115, 6249 (2018).
May, R. M. Biological diversoty – differences between land and sea. Philos. Trans. R. Soc. B 343, 105–111 (1994).
Carrete Vega, G. & Wiens John, J. Why are there so few fish in the sea? Proc. R. Soc. Lond. Ser. B 279, 2323–2329 (2012).
Albouy C. et al. The marine fish food web is globally connected. Nat. Ecol. Evol. 3, 1153–1161 (2019).
Chaudhary, C., Saeedi, H. & Costello, M. J. Bimodality of latitudinal gradients in marine species richness. Trends Ecol. Evol. 31, 670–676 (2016).
Brown, J. H. Why are there so many species in the tropics? J. Biogeogr. 41, 8–22 (2014).
Gillman, L. N. & Wright, S. D. Species richness and evolutionary speed: the influence of temperature, water and area. J. Biogeogr. 41, 39–51 (2014).
Grémillet D. et al. Spatial match–mismatch in the Benguela upwelling zone: should we expect chlorophyll and sea-surface temperature to predict marine predator distributions? J. Appl. Ecol. 45, 610–621 (2008).
Oppold, A.-M. et al. Support for the evolutionary speed hypothesis from intraspecific population genetic data in the non-biting midge Chironomus riparius. Proc. R. Soc. Lond. Ser. B 283, 20152413 (2016).
Thomaz, A. T., Christie, M. R. & Knowles, L. L. The architecture of river networks can drive the evolutionary dynamics of aquatic populations. Evolution 70, 731–739 (2016).
Riginos, C., Crandall, E. D., Liggins, L., Bongaerts, P. & Treml, E. A. Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies. Curr. Zool. 62, 581–601 (2016).
Morrissey, M. B. & de Kerckhove, D. T. The maintenance of genetic variation due to asymmetric gene flow in dendritic metapopulations. Am. Nat. 174, 875–889 (2009).
Labonne, J., Ravigné, V., Parisi, B. & Gaucherel, C. Linking dendritic network structures to population demogenetics: the downside of connectivity. Oikos 117, 1479–1490 (2008).
Benda, L. et al. The Network Dynamics Hypothesis: how channel networks structure riverine habitats. BioScience 54, 413–427 (2004).
Altermatt F. Diversity in riverine metacommunities: a network perspective. Aquat. Ecol. 47, 365–377 (2013).
Lévêque C., Oberdorff T., Paugy D., Stiassny M., Tedesco P. Freshwater Animal Diversity Assessment. Developments in Hydrobiology (Springer, Dordrecht, 2008).
Oberdorff, T., Guegan, J. F. & Hugueny, B. Global scale patterns of fish species richness in rivers. Ecography 18, 345–352 (1995).
Guegan, J. F., Lek, S. & Oberdorff, T. Energy availability and habitat heterogeneity predict global riverine fish diversity. Nature 391, 382–384 (1998).
Dias, M. S. et al. Global imprint of historical connectivity on freshwater fish biodiversity. Ecol. Lett. 17, 1130–1140 (2014).
Antonelli, A. & Sanmartín, I. Why are there so many plant species in the Neotropics? Taxon 60, 403–414 (2011).
Wiens, J., Alexander Pyron, R. & Moen, D. Phylogenetic origins of local-scale diversity patterns and causes of Amazonian megadiversity. Ecol. Lett. 14, 643–652 (2011).
Fourtune, L., Paz-Vinas, I., Loot, G., Prunier, J. G. & Blanchet, S. Lessons from the fish: a multi-species analysis reveals common processes underlying similar species-genetic diversity correlations. Freshw. Biol. 61, 1830–1845 (2016).
Romiguier J. et al. Comparative population genomics in animals uncovers the determinants of genetic diversity. Nature 515, 261–263 (2014).
Fortin M.-J., Dale M. Spatial analysis. A guide for ecologists. Vol. 365 (Cambridge University Press, New York, 2005).
Cheung, W., Pauly, D. L. & Sarmiento, J. How to make progress in projecting climate change impacts. J. ICES J. Mar. Sci. 70, 1069–1074 (2013).
Lamy, T. et al. Variation in habitat connectivity generates positive correlations between species and genetic diversity in a metacommunity. Mol. Ecol. 22, 4445–4456 (2013).
Taberlet, P. et al. Genetic diversity in widespread species is not congruent with species richness in alpine plant communities. Ecol. Lett. 15, 1439–1448 (2012).
Whitlock, R. Relationships between adaptive and neutral genetic diversity and ecological structure and functioning: a meta-analysis. J. Ecol. 102, 857–872 (2014).
Cinner J. E. et al. Gravity of human impacts mediates coral reef conservation gains. Proc. Natl Acad. Sci. USA. 115, E6116–E6125 (2018).
Pollock, L. J., Thuiller, W. & Jetz, W. Large conservation gains possible for global biodiversity facets. Nature 546, 141 (2017).
Schlötterer C., Tobler R., Kofler R., Nolte V. Sequencing pools of individuals – mining genome-wide polymorphism data without big funding. Nat. Rev. Genet. 15, 749–763 (2014).
Tishkoff, S. A. & Verrelli, B. C. Patterns of human genetic diversity: Implications for human evolutionary history and disease. Ann. Rev. Genomics Hum. Genet. 4, 293–340 (2003).
Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792–1797 (2004).
Okonechnikov, K., Golosova, O. & Fursov, M. the Ut. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics 28, 1166–1167 (2012).
Boettiger, C., Lang, D. T. & Wainwright, P. C. rfishbase: exploring, manipulating and visualizing FishBase data from R. J. Fish. Biol. 81, 2030–2039 (2012).
Nei, M. & Li, W. H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl Acad. Sci. USA 76, 5269 (1979).
Briggs J. Biogeography and plate tectonics, Vol. 10 (Amsterdam, Elsevier, 1987).
Pellissier, L., Heine, C., Rosauer, D. F. & Albouy, C. Are global hotspots of endemic richness shaped by plate tectonics? Biol. J. Linn. Soc. 123, 247–261 (2018).
Tedesco, P. A. et al. A global database on freshwater fish species occurrence in drainage basins. Sci. Data 4, 170141 (2017).
Marin, J. & Hedges, S. B. Time best explains global variation in species richness of amphibians, birds and mammals. J. Biogeogr. 43, 1069–1079 (2016).
Hurlbert, A. H. & Jetz, W. Species richness, hotspots, and the scale dependence of range maps in ecology and conservation. Proc. Natl Acad. Sci. USA 104, 13384 (2007).
Clifford, P., Richardson, S. & Hemon, D. Assessing the significance of the correlation be- tween two spatial processes. Biometrics 45, 123–134 (1989).
Dormann, C. F. et al. Methods to account for spatial autocorrelation in the analysis of species distributional data: a review. Ecography 30, 609–628 (2007).
Source: Ecology - nature.com
