Prum, R. O. et al. A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature 526, 569–573 (2015).
Jarvis, E. D. et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science 346, 1320–1331 (2014).
Claramunt, S. & Cracraft, J. A new time tree reveals Earth history’s imprint on the evolution of modern birds. Sci. Adv. 1, e1501005 (2015).
Field, D. J. et al. Early evolution of modern birds structured by global forest collapse at the end-Cretaceous mass extinction. Curr. Biol. 28, 1825–1831 (2018).
Larson, D. W., Brown, C. M. & Evans, D. C. Dental disparity and ecological stability in bird-like dinosaurs prior to the end-Cretaceous mass extinction. Curr. Biol. 26, 1325–1333 (2016).
Mayr, G. Avian higher level biogeography: Southern Hemispheric origins or Southern Hemispheric relicts? J. Biogeogr. 44, 956–958 (2017).
Saupe, E. E. et al. Climatic shifts drove major contractions in avian latitudinal distributions throughout the Cenozoic. Proc. Natl Acad. Sci. USA 116, 12895–12900 (2019).
Ksepka, D. T. & Phillips, M. J. Avian diversification patterns across the K–Pg boundary: influence of calibrations, datasets, and model misspecification. Ann. Mo. Bot. Gard. 100, 300–328 (2015).
Berv, J. S. & Field, D. J. Genomic signature of an avian Lilliput effect across the K–Pg extinction. Syst. Biol. 67, 1–13 (2018).
Field, D. J. et al. Timing the extant avian radiation: the rise of modern birds, and the importance of modeling molecular rate variation. PeerJ Preprints 7, e27521v1 (2019).
Mayr, G. Avian Evolution (Wiley, 2016).
Clarke, J. A., Tambussi, C. P., Noriega, J. I., Erickson, G. M. & Ketcham, R. A. Definitive fossil evidence for the extant avian radiation in the Cretaceous. Nature 433, 305–308 (2005).
Dyke, G. J. et al. Europe’s last Mesozoic bird. Naturwissenschaften 89, 408–411 (2002).
Xing, L., Stanley, E. L., Bai, M. & Blackburn, D. C. The earliest direct evidence of frogs in wet tropical forests from Cretaceous Burmese amber. Sci. Rep. 8, 8770 (2018).
Simões, T. R. et al. The origin of squamates revealed by a Middle Triassic lizard from the Italian Alps. Nature 557, 706–709 (2018).
Evers, S. W., Barrett, P. M. & Benson, R. B. J. Anatomy of Rhinochelys pulchriceps (Protostegidae) and marine adaptation during the early evolution of chelonioids. PeerJ 7, e6811 (2019).
Bi, S. et al. An Early Cretaceous eutherian and the placental–marsupial dichotomy. Nature 558, 390–395 (2018).
Lee, M. S. Y. & Yates, A. M. Tip-dating and homoplasy: reconciling the shallow molecular divergences of modern gharials with their long fossil record. Proc. R. Soc. Lond. B 285, 20181071 (2018).
Hope, S. in Mesozoic Birds: Above the Heads of Dinosaurs (eds Chiappe, L. M. & Witmer, L. M.) 339–388 (Univ. California Press, 2002).
Longrich, N. R., Tokaryk, T. & Field, D. J. Mass extinction of birds at the Cretaceous–Paleogene (K–Pg) boundary. Proc. Natl Acad. Sci. USA 108, 15253–15257 (2011).
Mayr, G. Paleogene Fossil Birds (Springer, 2009).
Clyde, W. C., Ramezani, J., Johnson, K. R., Bowring, S. A. & Jones, M. M. Direct high-precision U–Pb geochronology of the end-Cretaceous extinction and calibration of Paleocene astronomical timescales. Earth Planet. Sci. Lett. 452, 272–280 (2016).
Gauthier, J. A. & de Queiroz, K. in New Perspectives on the Origin and Early Evolution of Birds: Proceedings of the International Symposium in Honor of John H. Ostrom (eds Gauthier, J. & Gall, L. F.) 7–41 (Peabody Museum of Natural History, Yale University, 2001).
Keutgen, N. A bioclast-based astronomical timescale for the Maastrichtian in the type area (southeast Netherlands, northeast Belgium) and stratigraphic implications: the legacy of PJ Felder. Neth. J. Geosci. 97, 229–260 (2018).
Field, D. J., Lynner, C., Brown, C. & Darroch, S. A. F. Skeletal correlates for body mass estimation in modern and fossil flying birds. PLoS One 8, e82000 (2013).
Olson, S. L. & Feduccia, A. Presbyornis and the origin of the Anseriformes (Aves: Charadriomorphae). Smithson. Contrib. Zool. 323, 1–24 (1980).
Elzanowski, A. & Stidham, T. A. Morphology of the quadrate in the Eocene anseriform Presbyornis and extant galloanserine birds. J. Morphol. 271, 305–323 (2010).
Worthy, T. H., Degrange, F. J., Handley, W. D. & Lee, M. S. Y. The evolution of giant flightless birds and novel phylogenetic relationships for extinct fowl (Aves, Galloanseres). R. Soc. Open Sci. 4, 170975 (2017).
Tambussi, C. P., Degrange, F. J., De Mendoza, R. S., Sferco, E. & Santillana, S. A stem anseriform from the early Palaeocene of Antarctica provides new key evidence in the early evolution of waterfowl. Zool. J. Linn. Soc. 186, 673–700 (2019).
Mayr, G., De Pietri, V. L., Love, L., Mannering, A. & Scofield, R. P. Oldest, smallest and phylogenetically most basal pelagornithid, from the early Paleocene of New Zealand, sheds light on the evolutionary history of the largest flying birds. Pap. Palaeontol. https://doi.org/10.1002/spp2.1284 (2019).
Budd, G. E. & Mann, R. P. The dynamics of stem and crown groups. Sci. Adv. 6, eaaz1626 (2020).
Ksepka, D. T. & Clarke, J. Phylogenetically vetted and stratigraphically constrained fossil calibrations within Aves. Palaeontologia Electronica 18, 18.1.3FC (2015).
Mayr, G., De Pietri, V. L., Scofield, R. P. & Worthy, T. H. On the taxonomic composition and phylogenetic affinities of the recently proposed clade Vegaviidae Agnolín et al., 2017 – neornithine birds from the Upper Cretaceous of the Southern Hemisphere. Cretaceous Research 86, 178–185 (2018).
Clarke, J. A. et al. Fossil evidence of the avian vocal organ from the Mesozoic. Nature 538, 502–505 (2016).
Agnolín, F. L., Egli, F. B., Chatterjee, S., Marsà, J. A. G. & Novas, F. E. Vegaviidae, a new clade of southern diving birds that survived the K/T boundary. Naturwissenschaften 104, 87 (2017).
O’Connor, J. K., Chiappe, L. M. & Bell, A. in Living Dinosaurs: The Evolutionary History of Modern Birds (eds Dyke, G. & Kaiser, G.) 39–114 (Wiley-Blackwell, 2011).
Cracraft, J. in The Phylogeny and Classification of the Tetrapods Vol. 1 (ed. Benton, M. J.) 339–361 (Oxford Univ. Press, 1988).
Livezey, B. C. A phylogenetic analysis of basal Anseriformes, the fossil Presbyornis, and the interordinal relationships of waterfowl. Zool. J. Linn. Soc. 121, 361–428 (1997).
Cracraft, J. & Clarke, J. The basal clades of modern birds. In New Perspectives on the Origin and Early Evolution of Birds: Proceedings of the International Symposium in Honor of John H. Ostrom (eds Gauthier, J. & Gall, L. F.) 143–156 (Peabody Museum of Natural History, Yale University, 2001).
Felice, R. N. & Goswami, A. Developmental origins of mosaic evolution in the avian cranium. Proc. Natl Acad. Sci. USA 115, 555–560 (2018).
Field, D. J. Endless skulls most beautiful. Proc. Natl Acad. Sci. USA 115, 448–450 (2018).
Huxley, T. H. On the classification of birds; and on the taxonomic value of the modifications of certain of the cranial bones observable in that class. Proc. Zool. Soc. Lond. 1867, 415–472 (1867).
Ericson, P. G. P. Systematic relationships of the Palaeogene family Presbyornithidae (Aves: Anseriformes). Zool. J. Linn. Soc. 121, 429–483 (1997).
Cooney, C. R. et al. Mega-evolutionary dynamics of the adaptive radiation of birds. Nature 542, 344–347 (2017).
Bright, J. A., Marugán-Lobón, J., Rayfield, E. J. & Cobb, S. N. The multifactorial nature of beak and skull shape evolution in parrots and cockatoos (Psittaciformes). BMC Evol. Biol. 19, 104 (2019).
Field, D. J. & Hsiang, A. Y. A North American stem turaco, and the complex biogeographic history of modern birds. BMC Evol. Biol. 18, 102 (2018).
Mourer-Chauviré, C. Les oiseaux fossiles des phosphorites du Quercy (Éocène supérieur a Oligocène supérieur): implications paléobiogéographiques. Geobios 15, 413–426 (1982).
Mayr, G. Two-phase extinction of “Southern Hemispheric” birds in the Cenozoic of Europe and the origin of the Neotropic avifauna. Palaeobiodivers. Palaeoenviron. 91, 325–333 (2011).
O’Connor, J. K. & Zhou, Z. The evolution of the modern avian digestive system: insights from paravian fossils from the Yanliao and Jehol biotas. Palaeontology 63, 13–27 (2020).
Feduccia, A. Explosive evolution in tertiary birds and mammals. Science 267, 637–638 (1995).
Clarke, J. A. Morphology, phylogenetic taxonomy, and systematics of Ichthyornis and Apatornis (Avialae: Ornithurae). Bull. Am. Mus. Nat. Hist. 286, 1–179 (2004).
Field, D. J. et al. Complete Ichthyornis skull illuminates mosaic assembly of the avian head. Nature 557, 96–100 (2018).
Mayr, G. & Weidig, I. The early Eocene bird Gallinuloides wyomingensis – a stem group representative of Galliformes. Acta Palaeontol. Pol. 49, 211–217 (2004).
Ksepka, D. T. Broken gears in the avian molecular clock: new phylogenetic analyses support stem galliform status for Gallinuloides wyomingensis and rallid affinities for Amitabha urbsinterdictensis. Cladistics 25, 173–197 (2009).
Mayr, G. & Rubilar-Rogers, D. Osteology of a new giant bony-toothed bird from the Miocene of Chile, with a revision of the taxonomy of Neogene Pelagornithidae. J. Vertebr. Paleontol. 30, 1313–1330 (2010).
Bourdon, E. Osteological evidence for sister group relationship between pseudo-toothed birds (Aves: Odontopterygiformes) and waterfowls (Anseriformes). Naturwissenschaften 92, 586–591 (2005).
Mayr, G. Cenozoic mystery birds – on the phylogenetic affinities of bony-toothed birds (Pelagornithidae). Zool. Scr. 40, 448–467 (2011).
Goloboff, P. A. & Catalano, S. A. TNT version 1.5, including a full implementation of phylogenetic morphometrics. Cladistics 32, 221–238 (2016).
Ronquist, F. et al. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61, 539–542 (2012).
Miller, M. A., Pfeiffer, W. & Schwartz, T. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In Gateway Computing Environments Workshop (GCE 2010) 45–53 (IEEE, 2010).
Lewis, P. O. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 50, 913–925 (2001).
Heath, T. A., Huelsenbeck, J. P. & Stadler, T. The fossilized birth–death process for coherent calibration of divergence-time estimates. Proc. Natl Acad. Sci. USA 111, E2957–E2966 (2014).
Zhang, C., Stadler, T., Klopfstein, S., Heath, T. A. & Ronquist, F. Total-evidence dating under the fossilized birth–death process. Syst. Biol. 65, 228–249 (2016).
Kealy, S. & Beck, R. Total evidence phylogeny and evolutionary timescale for Australian faunivorous marsupials (Dasyuromorphia). BMC Evol. Biol. 17, 240 (2017).
Vinther, J., Parry, L., Briggs, D. E. & Van Roy, P. Ancestral morphology of crown-group molluscs revealed by a new Ordovician stem aculiferan. Nature 542, 471–474 (2017).
Gill, F., Donsker, D & Rasmussen, P. (eds) IOC World Bird List (v.10.1) https://www.worldbirdnames.org/ioc-lists/crossref/ (2020).
Field, D. J., LeBlanc, A., Gau, A. & Behlke, A. D. B. Pelagic neonatal fossils support viviparity and precocial life history of Cretaceous mosasaurs. Palaeontology 58, 401–407 (2015).
Ericson, P. G. P. et al. Diversification of Neoaves: integration of molecular sequence data and fossils. Biol. Lett. 2, 543–547 (2006).
Jetz, W., Thomas, G. H., Joy, J. B., Hartmann, K. & Mooers, A. O. The global diversity of birds in space and time. Nature 491, 444–448 (2012).
Phillips, M. J. Geomolecular dating and the origin of placental mammals. Syst. Biol. 65, 546–557 (2016).
He, H. Y. et al. Timing of the Jiufotang Formation (Jehol Group) in Liaoning, northeastern China, and its implications. Geophys. Res. Lett. 31, (2004).
Wang, X. et al. The earliest evidence for a supraorbital salt gland in dinosaurs in new Early Cretaceous ornithurines. Sci. Rep. 8, 3969 (2018).
Musser, G., Ksepka, D. T. & Field, D. J. New material of Paleocene-Eocene Pellornis (Aves: Gruiformes) clarifies the pattern and timing of the extant Gruiform radiation. Diversity 11, 102 (2019).
Ksepka, D. T., Stidham, T. A. & Williamson, T. E. Early Paleocene landbird supports rapid phylogenetic and morphological diversification of crown birds after the K–Pg mass extinction. Proc. Natl Acad. Sci. USA 114, 8047–8052 (2017).
Parham, J. F. et al. Best practices for justifying fossil calibrations. Syst. Biol. 61, 346–359 (2012).
Püschel, H. P., O’Reilly, J. E., Pisani, D. & Donoghue, P. C. J. The impact of fossil stratigraphic ranges on tip-calibration, and the accuracy and precision of divergence time estimates. Palaeontology 63, 67–83 (2020).
Worthy, T. H. et al. Osteology supports a stem-galliform affinity for the giant extinct flightless bird Sylviornis neocaledoniae (Sylviornithidae, Galloanseres). PLoS One 11, e0150871 (2016).
Benton, M. J. & Donoghue, P. C. J. Paleontological evidence to date the tree of life. Mol. Biol. Evol. 24, 26–53 (2007).
Reddy, S. et al. Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling. Syst. Biol. 66, 857–879 (2017).
Hackett, S. J. et al. A phylogenomic study of birds reveals their evolutionary history. Science 320, 1763–1768 (2008).
Kimball, R. T. et al. A phylogenomic supertree of birds. Diversity 11, 109 (2019).
Dunning, J. B. CRC Handbook of Avian Body Masses 2nd edn (CRC Press, 2007).
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