Classification of dietary preferences and habitats for bird species in Japan via literature
We reviewed the food habits of 633 native avian species listed in the Check-list of Japanese Birds, 7th Revised Edition39 in attempting to represent the whole avian fauna of Japan. Nine ecological traits related to distribution, habitat and diet are listed in our database along with references as shown below (Table 1): (1) the distribution and breeding status in each region of Japan (Fig. 1), (2) the endemicity in Japan (Endemic, or −: not endemic to Japan)39, (3) the species status in the Red List of Threatened Species of Japan, (4) main habitat (Terrestrial, Freshwater, and/or Marine, or Unknown), (5) dietary categories (I: carnivore, II: herbivore, IV: omnivore, or Unknown; Fig. 2), (6) main diet(s) (I: some animals, II: some plants, I-i: fishes, I-ii: vertebrates, I-iii: arthropods, I-iv: molluscs, I-v: unknown or other animals, II-fr: plants [fruits and/or seeds], and/or III: scavenger, or Unknown; Fig. 2), (7) all recorded food habits (I-i, I-ii, I-iii, I-iv, I-v, II-fr, II-le: plants [leaves and/or others], or III; Fig. 2), (8) molluscs as avian food resources (iv-t: terrestrial molluscs, iv-f: freshwater molluscs, iv-mg: marine gastropods, iv-mb: marine bivalves, iv-mc: marine cephalopods, or iv-o: others or unknown molluscs; Fig. 2), (9) descriptions of molluscan prey in literature, and (10) referenced bibliographies.
Seven categories of distribution area in this study.
The categories of preferred foods in this study. Food preferences were first categorized into four big groups (I. carnivore, II. herbivore, III. scavenger and IV. omnivore), and two of them (I and II) were further separated. In particular, molluscs were classified in detail.
To keep our findings relevant, we reviewed the validity of species binomial names listed in our database and provide updates reflective of current taxonomic knowledge in 2020. A review was conducted using the Birds of the World online research database36 and apparent updates to binomials were cross-referenced using the International Union for Conservation of Nature’s Red List of Threatened Species (https://www.iucnredlist.org). The updated binomial information is included in Online-only Table 1.
We roughly categorised seven regions for avian distribution in the Japanese archipelago (Hok: Hokkaido Island and/or surrounding islands, Hon: Honshu Island and/or surrounding islands, Shi: Shikoku Island and/or surrounding islands, Kyu: Kyushu Island and/or surrounding islands, Ryu: Ryukyu archipelago, Izu: Izu islands, Oga: Ogasawara islands; Fig. 1), and classified six categories for residency in each region of Japan (RB: resident breeder, MB: migrant breeder, WV: winter visitor, PV: passage visitor, FB: former breeder, or −: not distributed, rare, or unknown) based on the Check-list of Japanese Birds, 7th Revised Edition39, and added seven categories for the species status in Japan based on the 2020, 4th Version of the Japanese Red Lists (EX: extinct, CR: critically endangered, EN: endangered, VU: vulnerable, NT: near threatened, DD: data deficient, or −: common species or not listed)5. To determine each species’ main diet, we primarily focused on literature describing “preferred” or “main” food habits, although we also utilized information about the frequency of target foods in crop and gizzard contents. The taxonomies of molluscan prey written in the database were mainly based on MolluscaBase (http://www.molluscabase.org), the online database of world mollusc classifications. While our database does not contain perfect information on distribution, residency, and conservation status in terms of current knowledge, we believe it represents a high degree of accuracy and usefulness in pulling together comprehensive information from different sources.
The diet data in this study was collected from 165 scientific articles and books including dietary information on Japanese birds. We searched for the following two series of keywords in Google Scholar for each bird species: {“scientific name” AND [“food habits” OR “diet” OR “food habits (in Japanese)” OR “crop and gizzard contents (in Japanese)”]} and {“standard Japanese name (in Japanese)” AND [“food habits” OR “diet” OR “food habits (in Japanese)” OR “crop and gizzard contents (in Japanese)”]}. Keyword searching and browsing was conducted between 2nd May and 27th December in 2017, and the top one-hundred and all results for each series of keywords was checked, respectively. Moreover, we manually reviewed additional several literatures and books as possible. These included publications in English and Japanese and were published between 1913 and 2018. All 165 references citing the food habits for each bird species are recorded in the database, and listed on the reference list in Zenodo40.
Land snails detected from the crop and gizzard of two bird species in Hokkaido, Japan
Crop and gizzard samples were obtained from two juvenile Oriental Turtle-Doves (Streptopelia orientalis; Columbidae, Columbiformes; Fig. 3A) and one juvenile Hazel Grouse (Tetrastes bonasia; Phasianidae, Galliformes; Fig. 3B). An individual T. bonasia was hunted at Ubaranai site no. 1 (Abashiri City, Hokkaido, Japan; N 43.9678°, E 144.0414°) on 7 November 2013, and two S. orientalis were shot at Ubaranai site no. 2 (Abashiri City, Hokkaido, Japan; N 43.9261°, E 144.0406°) on 28 October 2016. These birds were shot by a professional hunter for food and stored in a freezer; we then received them from the hunter and carefully extracted the crop and gizzard contents. Crop and gizzard contents of T. bonasia were identified from a photograph, while those of S. orientalis were identified directly from samples. In addition, the combined weight of crop and gizzard contents were measured for both S. orientalis individuals using an electronic scale (wet and dry weights for one, and dry weight only for the other; Online-only Table 2). The data collected from these samples is also included in our database.
(A,B) Two bird species investigated in this study, Streptopelia orientalis (A), and Tetrastes bonasia (B). (C–H) The prey items detected from avian crops and gizzards of S. orientalis, (C) Cochlicopa lubrica (Cochlicopidae, Stylommatophora), (D) Discus pauper (Discidae, Stylommatophora), (E) Karaftohelix (Ezohelix) gainesi (Camaenidae, Stylommatophora), (F) Parakaliella affinis (Helicarionidae, Stylommatophora), (G) Persicaria thunbergii (Polygonaceae, Caryophyllales), and (H) Schizopepon bryoniifolius (Cucurbitaceae, Cucurbitales). I. The photograph of crop and gizzard contents of T. bonasia.
Source: Ecology - nature.com