Grigg, G. & Kirshner, D. Biology and Evolution of Crocodylians (CSIRO Publishing, 2015). https://doi.org/10.1071/9781486300679.
Singh, L. A. K. Ecological studies on the Indian gharial Gavialis gangeticus (Gmelin) (Reptilia, Crocodilia). PhD Thesis, Utkal University, Odisha (1978).
Whitaker, R. The management of crocodilians in India. In Wildlife Management; Crocodiles and Alligators (eds Webb, G. J. W. et al.) 63–72 (Surrey Beatty and Sons, 1987).
Hussain, S. A. Reproductive success, hatchling survival and rate of increase of gharial Gavialis gangeticus in National Chambal Sanctuary, India. Biol. Conserv. 87, 261–268 (1999).
Bustard, H. R. A future for the Gharial. Cheetal 17, 3–8 (1975).
Hussain, S. A. Basking site and water depth selection by gharial Gavialis gangeticus Gmelin 1789 (Crocodylia, Reptilia) in National Chambal Sanctuary, India and its implication for river conservation. Aquat. Conserv. Mar. Freshw. Ecosyst. 19, 127–133 (2009).
Lang, J. W., Chowfin, S. & Ross, J. P. Gavialis gangeticus (errata version published in 2019). IUCN Red List Threat. Species 2019 (2019).
Basu, D. Saving the gharial. Indian Wildlifer 1, 7–15 (1981).
Singh, V. B. The status of the gharial (Gavialis gangeticus) in U.P. and its rehabilitation. J. Bombay Nat. Hist. Soc. 75, 668–683 (1978).
Stevenson, C. & Whitaker, R. Indian Gharial Gavialis gangeticus. In Crocodiles. Status Survey and Conservation Action Plan (eds Manolis, S. C. & Stevenson, C.) 139–143 (Crocodile Specialist Group, 2010).
Whitaker, R. & Basu, D. The gharial (Gavialis gangeticus) a review. J. Bombay Nat. Hist. Soc. 79, 531–548 (1982).
Whitaker, R. The gharial: Going extinct again. Iguana 14, 25–33 (2007).
Lang, J. W., Jailabdeen, A. & Kumar, P. Gharial ecology project—Update 2018–2019. IUCN-SSC Crocodile Spec. Gr. Newsl. 37, 15–17 (2018).
IUCN/SSC. Guidelines for Reintroductions and Other Conservation Translocations IUCN. Version 1.0. Gland, Switzerland: IUCN Species Survival Commission viiii + 57 pp. (2013).
Schwartz, M. K. Guidelines on the use of molecular genetics in reintroduction programs. EU LIFE-Nature Proj. to Guidel. reintroduction Threat. species 51–58 (2005).
White, L. C., Moseby, K. E., Thomson, V. A., Donnellan, S. C. & Austin, J. J. Long-term genetic consequences of mammal reintroductions into an Australian conservation reserve. Biol. Conserv. 219, 1–11 (2018).
Weeks, A. R. et al. Assessing the benefits and risks of translocations in changing environments: A genetic perspective. Evol. Appl. 4, 709–725 (2011).
Hughes, A. R., Inouye, B. D., Johnson, M. T. J., Underwood, N. & Vellend, M. Ecological consequences of genetic diversity. Ecol. Lett. 11, 609–623 (2008).
Katdare, S. et al. Gharial (Gavialis gangeticus) populations and human influences on habitat on the River Chambal, India. Aquat. Conserv. Mar. Freshw. Ecosyst. 21, 364–371 (2011).
Nair, T., Thorbjarnarson, J. B., Aust, P. & Krishnaswamy, J. Rigorous gharial population estimation in the Chambal: Implications for conservation and management of a globally threatened crocodilian. J. Appl. Ecol. 49, 1046–1054 (2012).
Hussain, S. A. Ecology of gharial (Gavialis gangeticus) in National Chambal Sanctuary. MPhil Thesis, Aligarh Muslim University, Uttar Pradesh (1991).
Sharma, S. P. et al. Mitochondrial DNA analysis reveals extremely low genetic diversity in a managed population of the Critically Endangered Gharial (Gavialis gangeticus, Gmelin 1789). Herpetol. J. 30, 202–206 (2020).
Jogayya, K. N., Meganathan, P. R., Dubey, B. & Haque, I. Novel microsatellite DNA markers for Indian Gharial (Gavialis gangeticus). Conserv. Genet. Resour. 5, 787–790 (2013).
Zhu, H., Wu, X., Xue, H., Wei, L. & Hu, Y. Isolation of polymorphic microsatellite loci from the Chinease alligator (Alligator sinensis). Mol. Ecol. Resour. 9, 892–894 (2009).
Glenn, T. C. et al. Characterization of microsatellite DNA loci in American alligators. Copeia 3, 591–601 (1998).
Ojeda, G. N., Amavet, P. S., Rueda, E. C., Siroski, P. A. & Larriera, A. Mating system of Caiman yacare (Reptilia: Alligatoridae) described from microsatellite genotypes. J. Hered. 108, 135–141 (2017).
Yu, D. et al. Analysis of genetic variation and bottleneck in a captive population of Siamese crocodile using novel microsatellite loci. Conserv. Genet. Resour. 3, 217–220 (2011).
Hinlo, M. R. P. et al. Population genetics implications for the conservation of the Philippine Crocodile Crocodylus mindorensis Schmidt, 1935 (Crocodylia: Crocodylidae). J. Threat. Taxa 6, 5513–5533 (2014).
Mcvay, J. D. et al. Evidence of multiple paternity in Morelet’s Crocodile (Crocodylus moreletii) in Belize, CA, inferred from microsatellite markers. J. Exp. Zool. Part A Ecol. Genet. Physiol. 309, 643–648 (2008).
Dever, J. A., Strauss, R. E., Rainwater, T. R., McMurry, S. T. & Densmore, I. L. D. Genetic diversity, population subdivision, and gene flow in Morelet’s crocodile (Crocodylus moreletii) from Belize, Central America. Copeia 4, 1078–1091 (2002).
Aggarwal, R. K., Lalremruata, A. & Dubey, B. Development of fourteen novel microsatellite markers of Crocodylus palustris, the Indian mugger, and their cross-species transferability in ten other crocodilians. Conserv. Genet. Resour. 7, 197–200 (2014).
Campos, J. C., Mobaraki, A., Abtin, E., Godinho, R. & Brito, J. C. Preliminary assessment of genetic diversity and population connectivity of the Mugger Crocodile in Iran. Amphib. Reptil. 39, 126–131 (2018).
Garner, A., Rachlow, J. L. & Hicks, J. F. Patterns of genetic diversity and its loss in mammalian populations. Conserv. Biol. 19, 1215–1221 (2005).
Rossi, N. A. et al. High levels of population genetic differentiation in the American crocodile (Crocodylus acutus). PLoS ONE 15, e0235288 (2020).
van Asch, B. et al. Phylogeography, genetic diversity, and population structure of Nile crocodile populations at the fringes of the southern African distribution. PLoS ONE 14, 1–20 (2019).
Luck, N. L. et al. Mitochondrial DNA analyses of the saltwater crocodile (Crocodylus porosus) from the Northern Territory of Australia. Aust. J. Zool. 60, 18–25 (2012).
Russello, M. A., Brazaitis, P., Gratten, J., Watkins-Colwell, G. J. & Caccone, A. Molecular assessment of the genetic integrity, distinctiveness and phylogeographic context of the Saltwater crocodile (Crocodylus porosus) on Palau. Conserv. Genet. 8, 777–787 (2007).
Ray, D. A. et al. Low levels of nucleotide diversity in Crocodylus moreletiiand evidence of hybridization with C. acutus. Conserv. Genet. 5, 449–462 (2004).
Eckert, C. G., Samis, K. E. & Lougheed, S. C. Genetic variation across species’ geographical ranges: The central-marginal hypothesis and beyond. Mol. Ecol. 17, 1170–1188 (2008).
Ellegren, H. & Galtier, N. Determinants of genetic diversity. Nat. Rev. Genet. 17, 422–433 (2016).
Romiguier, J. et al. Comparative population genomics in animals uncovers the determinants of genetic diversity. Nature 515, 261–263 (2014).
Allendorf, F. W. & Luikart, G. Conservation and the Genetics of Populations (Blackwell Publishing, 2007).
Guries, R. P. & Ledig, F. T. Genetic structure of populations and differentiation in forest trees. in Conkle, MT (tech. coord.) Proceedings of the symposium on isozymes of North American forest trees and forest insects. USDA For. Serv. Gen. Tech. Rep. PSW-48 42–47 (1979).
Biebach, I. & Keller, L. F. Inbreeding in reintroduced populations: The effects of early reintroduction history and contemporary processes. Conserv. Genet. 11, 527–538 (2010).
Wang, J. Estimating pairwise relatedness in a small sample of individuals. Heredity (Edinb). 119, 302–313 (2017).
Degiorgio, M. & Rosenberg, N. A. An unbiased estimator of gene diversity in samples containing related individuals p. Mol. Biol. Evol. 26, 501–512 (2008).
Jombart, T., Devillard, S. & Balloux, F. Discriminant analysis of principal components: A new method for the analysis of genetically structured populations. BMC Genet. 11, 94 (2010).
Girod, C., Vitalis, R., Leblois, R. & Fréville, H. Inferring population decline and expansion from microsatellite data: A simulation-based evaluation of the msvar method. Genetics 188, 165–179 (2011).
Luikart, G. & Cornuet, J. M. Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv. Biol. 12, 228–237 (1998).
Keller, L. F. et al. Immigration and the ephemerality of a natural population bottleneck: Evidence from molecular markers. Proc. R Soc. London. Ser. B Biol. Sci. 268, 1387–1394 (2001).
Cristescu, R., Sherwin, W. B., Handasyde, K., Cahill, V. & Cooper, D. W. Detecting bottlenecks using BOTTLENECK 1.2.02 in wild populations: The importance of the microsatellite structure. Conserv. Genet. 11, 1043–1049 (2010).
Peery, M. Z. et al. Reliability of genetic bottleneck tests for detecting recent population declines. Mol. Ecol. 21, 3403–3418 (2012).
Hoban, S. M., Gaggiotti, O. E. & Bertorelle, G. The number of markers and samples needed for detecting bottlenecks under realistic scenarios, with and without recovery: A simulation-based study. Mol. Ecol. 22, 3444–3450 (2013).
Cornuet, J. M. & Luikart, G. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144, 2001–2014 (1996).
Sambrook, J., Fritsch, E. F. & Maniatis, T. Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Laboratory Press, 1989).
Miquel, C. et al. Quality indexes to assess the reliability of genotypes in studies using noninvasive sampling and multiple-tube approach. Mol. Ecol. Notes 6, 985–988 (2006).
Oaks, J. R. A time-calibrated species tree of Crocodylia reveals a recent radiation of the true crocodiles. Evolution (N.Y.) 65, 3285–3297 (2011).
Broquet, T. & Petit, E. Quantifying genotyping errors in noninvasive population genetics. Mol. Ecol. 13, 3601–3608 (2004).
Chapuis, M. P. & Estoup, A. Microsatellite null alleles and estimation of population differentiation. Mol. Biol. Evol. 24, 621–631 (2007).
Van Oosterhout, C., Hutchinson, W. F., Wills, D. P. M. & Shipley, P. MICRO-CHECKER: Software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4, 535–538 (2004).
Valière, N. GIMLET: A computer program for analysing genetic individual identification data. Mol. Ecol. Notes 2, 377–379 (2002).
Peakall, R. & Smouse, P. E. GenALEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28, 2537–2539 (2012).
Kalinowski, S. T., Taper, M. L. & Marshall, T. C. Revising how the computer program cervus accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16, 1099–1106 (2007).
Kalinowski, S. T. HP-RARE 1.0—A computer program for performing rarefaction on measures of allelic richness.pdf. Mol. Ecol. Notes 5, 187–189 (2005).
Weir, B. S. & Cockerham, C. Estimating F-statistics for the analysis of population structure. Evolution (N. Y.). 38, 1358–1370 (1984).
Hedrick, P. W. A standardized genetic differentiation measure. Evolution (N. Y.). 59, 1633–1638 (2005).
Jost, L. GST and its relatives do not measure differentiation. Mol. Ecol. 17, 4015–4026 (2008).
Archer, F. I., Adams, P. E. & Schneiders, B. B. stratag: An r package for manipulating, summarizing and analysing population genetic data. Mol. Ecol. Resour. 17, 5–11 (2017).
Pritchard, J. K., Stephens, M. & Donnelly, P. Inference of population structure using multilocus genotype data: Dominant markers and null alleles. Genetics 155, 945–959 (2000).
Hubisz, M. J., Falush, D., Stephens, M. & Pritchard, J. K. Inferring weak population structure with the assistance of sample group information. Mol. Ecol. Resour. 9, 1322–1332 (2009).
Evanno, G., Regnaut, S. & Goudet, J. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol. Ecol. 14, 2611–2620 (2005).
Earl, D. A. & VonHoldt, B. M. STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4, 359–361 (2012).
Rosenberg, N. A. DISTRUCT: A program for the graphical display of population structure. Mol. Ecol. Notes 4, 137–138 (2004).
Wilson, G. A. & Rannala, B. Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163, 1177–1191 (2003).
Excoffier, L., Laval, G. & Schneider, S. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol. Bioinforma. Online. 1, 47–50 (2005).
Piry, S., Luikart, G. & Cornuet, J. M. BOTTLENECK: A computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90, 502–503 (1999).
Garza, J. C. & Williamson, E. G. Detection of reduction in population size using data from microsatellite loci. Mol. Ecol. 10, 305–318 (2001).
Di Rienzo, A. et al. Mutational processes of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91, 3166–3170 (1994).
Thompson, J. D., Higgins, D. G. & Gibson, T. J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673–4680 (1994).
Hall, T. A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symp. Ser. 41, 95–98 (1999).
Librado, P. & Rozas, J. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451–1452 (2009).
Source: Ecology - nature.com
