Investigating bio-remediation capabilities of a constructed wetland through spatial successional study of the sediment microbiome
Afolalu, S. A., Ikumapayi, O. M., Ogedengbe, T. S., Kazeem, R. A. & Ogundipe, A. T. Waste pollution, wastewater and effluent treatment methods – an overview. Mater. Today Proc. 62, 3282–3288 (2022).Article
CAS
Google Scholar
Jamwal, P. & Shirin, S. Impact of microbial activity on the performance of planted and unplanted wetland at laboratory scale. Water Pract. Technol. 16, 472–489 (2021).Article
Google Scholar
Wang, J. et al. A review on microorganisms in constructed wetlands for typical pollutant removal: species, function, and diversity. Front. Microbiol. 13, 845725 (2022).Article
Google Scholar
Shruthi, R. & Shivashankara, G. P. Effect of HRT and seasons on the performance of pilot-scale horizontal subsurface flow constructed wetland to treat rural wastewater. Water Pract. Technol. 17, 445–455 (2022).Article
Google Scholar
Arden, S. & Ma, X. Constructed wetlands for greywater recycle and reuse: a review. Sci. Total Environ. 630, 587–599 (2018).Article
CAS
Google Scholar
Ali, M., Rousseau, D. P. L. & Ahmed, S. A full-scale comparison of two hybrid constructed wetlands treating domestic wastewater in Pakistan. J. Environ. Manag. 210, 349–358 (2018).Article
CAS
Google Scholar
Corbella, C. & Puigagut, J. Improving domestic wastewater treatment efficiency with constructed wetland microbial fuel cells: Influence of anode material and external resistance. Sci. Total Environ. 631–632, 1406–1414 (2018).Article
Google Scholar
Rajan, R. J., Sudarsan, J. S. & Nithiyanantham, S. Microbial population dynamics in constructed wetlands: Review of recent advancements for wastewater treatment. Environ. Eng. Res. 24, 181–190 (2019).Article
Google Scholar
Karajić, M. et al. Microbial activity in a pilot-scale, subsurface flow, sand-gravel constructed wetland inoculated with halotolerant microorganisms. Afr. J. Biotechnol. 11, 15020–15029 (2012).
Google Scholar
Lee, C., Fletcher, T. D. & Sun, G. Nitrogen removal in constructed wetland systems. Eng. Life Sci. 9, 11–22 (2009).Article
CAS
Google Scholar
Hijosa-Valsero, M. et al. Removal of antibiotics from urban wastewater by constructed wetland optimization. Chemosphere 83, 713–719 (2011).Article
CAS
Google Scholar
Takavakoglou, V., Pana, E. & Skalkos, D. Constructed Wetlands as nature-based solutions in the post-COVID agri-food supply chain: challenges and opportunities. Sustain 14, 3145 (2022).Article
CAS
Google Scholar
Si, Z. et al. Mechanism and performance of trace metal removal by continuous-flow constructed wetlands coupled with a micro-electric field. Water Res. 164, 114937 (2019).Article
CAS
Google Scholar
Syranidou, E. et al. Responses of the endophytic bacterial communities of juncus acutus to pollution with metals, emerging organic pollutants and to bioaugmentation with indigenous strains. Front. Plant Sci. 9, 1526 (2018).Article
Google Scholar
Vassallo, A. et al. Temporal evolution of bacterial endophytes associated to the roots of phragmites australis exploited in phytodepuration of wastewater. Front. Microbiol. 11, 1652 (2020).Article
Google Scholar
Mukherjee, K. & Pal, S. Hydrological and landscape dynamics of floodplain wetlands of the Diara region, Eastern India. Ecol. Indic. 121, 106961 (2021).Article
Google Scholar
Bera, T. et al. Pollution assessment and mapping of potentially toxic elements (PTE) distribution in urban wastewater fed natural wetland, Kolkata, India. Environ. Sci. Pollut. Res. 29, 67801–67820 (2022).Article
CAS
Google Scholar
Polz, M. F. & Cordero, O. X. Bacterial evolution: genomics of metabolic trade-offs. Nat. Microbiol. 1, 16181 (2016).Article
CAS
Google Scholar
Dai, T. et al. Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities. Nat. Commun. 13, 175 (2022).Article
CAS
Google Scholar
Gandhi, S. R., Korolev, K. S. & Gore, J. Cooperation mitigates diversity loss in a spatially expanding microbial population. Proc. Natl Acad. Sci. USA 116, 23582–23587 (2019).Article
CAS
Google Scholar
Jin, D. et al. Bacterial communities and potential waterborne pathogens within the typical urban surface waters. Sci. Rep. 8, 1–9 (2018).Article
Google Scholar
Furman, O. et al. Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics. Nat. Commun. 11, 1–13 (2020).Article
Google Scholar
Lew, S., Glińska-Lewczuk, K. & Lew, M. The effects of environmental parameters on the microbial activity in peat-bog lakes. PLoS ONE 14, 1–18 (2019).Article
Google Scholar
Zheng, F. et al. Comparison and interpretation of freshwater bacterial structure and interactions with organic to nutrient imbalances in restored wetlands. Front. Microbiol. 13, 946537 (2022).Article
Google Scholar
Tardy, V. et al. Stability of soil microbial structure and activity depends on microbial diversity. Environ. Microbiol. Rep. 6, 173–183 (2014).Article
CAS
Google Scholar
Coyte, K. Z., Schluter, J. & Foster, K. R. The ecology of the microbiome: Networks, competition, and stability. Science 350, 663–666 (2015).Article
CAS
Google Scholar
Elder, F. C. T. et al. Stereoselective metabolism of chloramphenicol by bacteria isolated from wastewater, and the importance of stereochemistry in environmental risk assessments for antibiotics. Water Res. 217, 118415 (2022).Article
CAS
Google Scholar
Lopeman, R. C., Harrison, J., Desai, M. & Cox, J. A. G. Mycobacterium abscessus: environmental bacterium turned clinical nightmare. Microorganisms 7, 90 (2019).Article
CAS
Google Scholar
Zhao, J. et al. Production, purification and biochemical characterisation of a novel lipase from a newly identified lipolytic bacterium Staphylococcus caprae NCU S6. J. Enzyme Inhib. Med. Chem. 36, 248–256 (2021).Article
Google Scholar
Syed, A. et al. Heavy metals induced modulations in growth, physiology, cellular viability, and biofilm formation of an identified bacterial isolate. ACS Omega 6, 25076–25088 (2021).Article
CAS
Google Scholar
Delgado-Blas, J. F. et al. Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments. Commun. Biol. 4, 1–13 (2021).Article
Google Scholar
Kemper, K., De Goeje, P. L. & Peeper, D. S. Phenotype switching: tumor cell plasticity as a resistance mechanism and target for therapy. Cancer Res. 74, 5937–5942 (2014).Article
CAS
Google Scholar
NCCLS. Performance standards for antimicrobial disk and dilution susceptibility tests for bacteria isolated from animals. in Approved standard-second edition NCCLS document M31-A3 (ed. Wayne, P.) vol. 28 (National Committee for Clinical Laboratory Standards, 2002).CLSI. Performance standards for antimicrobial susceptibility testing; Twenty-Fifth informational supplement. in CLSI document M100-S25 (ed. Wayne, P.) (Clinical and Laboratory Standards Institute, 2015).Davies, J. & Dorothy, D. Origins and evolution of antibiotic resistance. Microbiol. Mol. Biol. Rev. 74, 417–433 (2010).Article
CAS
Google Scholar
Davies, J. Inactivation of antibiotics and the dissemination of resistance genes. Science 264, 375–382 (1994).Article
CAS
Google Scholar
Li, D. et al. Antibiotic resistance characteristics of environmental bacteria from an oxytetracycline production wastewater treatment plant and the receiving river. Appl. Environ. Microbiol. 76, 3444–3451 (2010).Article
CAS
Google Scholar
Rizzo, L. et al. Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: a review. Sci. Total Environ. 447, 345–360 (2013).Article
CAS
Google Scholar
Balcazar, J. L. Bacteriophages as vehicles for antibiotic resistance genes in the environment. PLoS Pathog. 10, 1–4 (2014).Article
Google Scholar
von Wintersdorff, C. J. H. et al. Dissemination of antimicrobial resistance in microbial ecosystems through horizontal gene transfer. Front. Microbiol. 7, 1–10 (2016).
Google Scholar
Al-Sarawi, H. A., Najem, A. B., Lyons, B. P., Uddin, S. & Al-Sarawi, M. A. Antimicrobial resistance in Escherichia coli isolated from marine sediment samples from Kuwait Bay. Sustain 14, 1–11 (2022).
Google Scholar
Tejedor-Junco, M. T., Díaz, V. C., González-Martín, M. & Tuya, F. Presence of microplastics and antimicrobial-resistant bacteria in sea cucumbers under different anthropogenic influences in Gran Canaria (Canary Islands, Spain). Mar. Biol. Res. 17, 537–544 (2021).Article
Google Scholar
Garcias, B. et al. Extended-spectrum β-lactam resistant klebsiella pneumoniae and escherichia coli in wild European hedgehogs (Erinaceus europeus) living in populated areas. Animals 11, 2837 (2021).Article
Google Scholar
Gessew, G. T., Desta, A. F. & Adamu, E. High burden of multidrug resistant bacteria detected in Little Akaki River. Comp. Immunol. Microbiol. Infect. Dis. 80, 101723 (2022).Article
CAS
Google Scholar
Lood, R., Ertürk, G. & Mattiasson, B. Revisiting antibiotic resistance spreading in wastewater treatment plants – Bacteriophages as a much neglected potential transmission vehicle. Front. Microbiol. 8, 1–7 (2017).Article
Google Scholar
Pedros-Alio, C. The rare bacterial biosphere. Ann. Rev. Mar. Sci. 4, 449–466 (2012).Article
Google Scholar
Lynch, M. D. J. & Neufeld, J. D. Ecology and exploration of the rare biosphere. Nat. Rev. Microbiol. 13, 217–229 (2015).Article
CAS
Google Scholar
Ratzke, C., Barrere, J. & Gore, J. Strength of species interactions determines biodiversity and stability in microbial communities. Nat. Ecol. Evol. 4, 376–383 (2020).Article
Google Scholar
Laland, K., Matthews, B. & Feldman, M. W. An introduction to niche construction theory. Evol. Ecol. 30, 191–202 (2016).Article
Google Scholar
Ghoul, M. & Mitri, S. The ecology and evolution of microbial competition. Trends Microbiol. 24, 833–845 (2016).Article
CAS
Google Scholar
Calatayud, J. et al. Positive associations among rare species and their persistence in ecological assemblages. Nat. Ecol. Evol. 4, 40–45 (2020).Article
Google Scholar
Goebel, W., Chakraborty, T. & Kreft, J. Bacterial hemolysins as virulence factors. Antonie Van Leeuwenhoek 54, 453–463 (1988).Article
CAS
Google Scholar
Pandey, A., Naik, M. & Dubey, S. K. Hemolysin, protease, and EPS producing pathogenic Aeromonas hydrophila Strain An4 shows antibacterial activity against marine bacterial fish pathogens. J. Mar. Biol. 2010, 563205 (2010).Article
Google Scholar
Wang, Z. et al. Plastisphere enrich antibiotic resistance genes and potential pathogenic bacteria in sewage with pharmaceuticals. Sci. Total Environ. 768, 144663 (2021).Article
CAS
Google Scholar
Wang, J. et al. Treatment of hospital wastewater by electron beam technology: removal of COD, pathogenic bacteria and viruses. Chemosphere 308, 136265 (2022).Article
CAS
Google Scholar
Cavalini, L., Jankoski, P., Correa, A. P. F., Brandelli, A. & Da Motta, A. S. Characterization of the antimicrobial activity produced by Bacillus sp. Isolated from wetland sediment. An. Acad. Bras. Cienc. 93, 1–13 (2021).Article
Google Scholar
Jankoski, P. R., Correa, A. P. F., Brandelli, A. & Da Motta, A. S. Biological activity of bacteria isolated from wetland sediments collected from a conservation unit in the southern region of Brazil. An. Acad. Bras. Cienc. 93, 1–15 (2021).Article
Google Scholar
Seruga, P. et al. Removal of ammonia from the municipal waste treatment effuents using natural minerals. Molecules 24, 3633 (2019).Article
CAS
Google Scholar
Du, Q., Liu, S., Cao, Z. & Wang, Y. Ammonia removal from aqueous solution using natural Chinese clinoptilolite. Sep. Purif. Technol. 44, 229–234 (2005).Article
CAS
Google Scholar
Tamura, K., Stecher, G. & Kumar, S. MEGA11: molecular evolutionary genetics analysis version 11. Mol. Biol. Evol. 38, 3022–3027 (2021).Article
CAS
Google Scholar
Saitou, N. & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425 (1987).CAS
Google Scholar
Tamura, K., Nei, M. & Kumar, S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl Acad. Sci. USA 101, 11030–11035 (2004).Article
CAS
Google Scholar
Batoni, G., Maisetta, G. & Esin, S. Antimicrobial peptides and their interaction with biofilms of medically relevant bacteria. Biochim. Biophys. Acta 1858, 1044–1060 (2016).Article
CAS
Google Scholar
Zidour, M. et al. Isolation and characterization of bacteria colonizing acartia tonsa copepod eggs and displaying antagonist effects against Vibrio anguillarum, Vibrio alginolyticus and other pathogenic strains. Front. Microbiol. 8, 1–13 (2017).Article
Google Scholar
Krumperman, P. H. Multiple antibiotic resistance indexing of Escherichia coli to identify high-risk sources of faecal contamination of water. Appl. Environ. Microbiol. 46, 165–170 (1983).Article
CAS
Google Scholar
Paria, P. et al. Molecular characterization and genetic diversity study of Vibrio parahaemolyticus isolated from aquaculture farms in India. Aquaculture 509, 104–111 (2019).Article
CAS
Google Scholar
Zheng, X. et al. Essential oils improve the survival of gnotobiotic brine shrimp (Artemia franciscana) challenged with Vibrio campbellii. Front. Immunol. 12, 693932 (2021).Article
CAS
Google Scholar
Taylor, S. M., He, Y., Zhao, B. & Huang, J. Heterotrophic ammonium removal characteristics of an aerobic heterotrophic nitrifying-denitrifying bacterium, Providencia rettgeri YL. J. Environ. Sci. 21, 1336–1341 (2009).Article
CAS
Google Scholar
Pereira, E. L., Borges, A. C. & da Silva, G. J. Effect of the Progressive Increase of Organic Loading Rate in an Anaerobic Sequencing Batch Reactor for Biodiesel Wastewater Treatment. Water 14, 223 (2022).Article
CAS
Google Scholar
Benítez-Chao, D. F., León-Buitimea, A., Lerma-Escalera, J. A. & Morones-Ramírez, J. R. Bacteriocins: An overview of antimicrobial, toxicity, and biosafety assessment by in vivo models. Front. Microbiol 12, 630695 (2021).Simons, A., Alhanout, K. & Duval, R. E. Bacteriocins, antimicrobial peptides from bacterial origin: overview of their biology and their impact against multidrug-resistant bacteria. Microorganisms 8, 639 (2020).Garcia-Garcera, M. & Rocha, E. PC. Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria. Nat. Commun. 11, 758 (2020).Soler, P., Moreno-Mesonero, L., Zornoza, A., V. Javier Macián, & Moreno, Y. Characterization of eukaryotic microbiome and associated bacteria communities in a drinking water treatment plant. Sci. Total Environ. 797, 149070 (2021).Karri, R. R., Sahu, J. N. & Chimmiri, V. Critical review of abatement of ammonia from wastewater. J. Mol. Liq. 261, 21–31 (2018).Article
CAS
Google Scholar
Royan, M. R., Solim, M. H., & Santanumurti, M. B. (2019, February). Ammonia-eliminating potential of Gracilaria sp. And zeolite: a preliminary study of the efficient ammonia eliminator in aquatic environment. In IOP Conference Series: Earth and Environmental Science (Vol. 236, No. 1, p. 012002). IOP Publishing.Liu, Y., Ngo, H. H., Guo, W., Peng, L., Wang, D. & Ni, B The roles of free ammonia (FA) in biological wastewater treatment processes: A review. Environ. Int. 123, 10–19 (2019).Article
CAS
Google Scholar
Guan, T. W., Lin, Y. J., Ou, M. Y. & Chen, K. B. Isolation and diversity of sediment bacteria in the hypersaline aiding lake, China. PloS one 15, e0236006 (2020).Article
CAS
Google Scholar
Nickum, J. et al. Guidelines for the use of fishes in research. FISHERIES-BETHESDA- 29 3, 26 (2004).Johansen, R., Needham, J.R., Colquhoun, D.J., Poppe, T.T. & Smith, A.J. Guidelines for health and welfare monitoring of fish used in research. Lab. Anim. 40, 323–340 (2006). More