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    Climate change benefits negated by extreme heat

    1.Mueller, N. D. et al. Nat. Food https://doi.org/10.1038/s43016-021-00372-z (2021).2.IPCC Climate Change 2021: The Physical Science Basis Summary for Policymakers (eds Masson-Delmotte, V. et al.) (Cambridge Univ. Press, in the press).3.Harrison, M. T., Tardieu, F., Dong, Z., Messina, C. D. & Hammer, G. L. Glob. Change Biol. 20, 867–878 (2014).ADS 
    Article 

    Google Scholar 
    4.Chang-Fung-Martel, J., Harrison, M. T., Rawnsley, R., Smith, A. P. & Meinke, H. Crop Pasture Sci. 68, 1158–1169 (2017).Article 

    Google Scholar 
    5.Climate Change and the Global Dairy Cattle Sector: The Role of the Dairy Sector in a Low-Carbon Future (FAO and GDP, 2018).6.World Dairy Map 2020: Shifting Gears in Global Dairy Trade (Rabobank, 2020); https://research.rabobank.com/far/en/sectors/dairy/world-dairy-map-2020.html7.Harrison, M. T., Cullen, B. R. & Armstrong, D. Agric. Syst. 155, 19–32 (2017).Article 

    Google Scholar 
    8.Harrison, M. T. et al. Anim. Prod. Sci. 56, 370–384 (2016).CAS 
    Article 

    Google Scholar 
    9.Harrison, M. T. et al. Glob. Change Biol. https://doi.org/10.1111/gcb.15816 (2021).10.Chang-Fung-Martel, J. et al. Int. J. Biometeorol. https://doi.org/10.1007/s00484-021-02167-0 (2021).11.U.S. Climate Extremes Index (CEI) (NOAA National Centers for Environmental Information, accessed 19 September 2021); https://www.ncdc.noaa.gov/extremes/cei/graph/us/01-12/2 More

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    Exploring the potential effect of COVID-19 on an endangered great ape

    Study site and demographic dataThe study was carried out in Volcanoes National Park, the Rwandan part of the Virunga massif, which is further shared with Uganda and the Democratic Republic of the Congo. We focused on habituated mountain gorilla groups monitored by the Dian Fossey Gorilla Fund’s Karisoke Research Center, often referred to as the Karisoke subpopulation. Since 1967, groups in this subpopulation have been followed on a near daily basis. Through the mid-2000s, the Karisoke groups generally numbered three but over the last decade, group fission events and new group formations resulted in an average of ten groups in the region (see42,43). During daily observations, detailed demographic data are recorded, such as group composition, birthdate and death date, group transfers (for further details see Strier et al.50). The data used for this study covers demographic data from 1967 to 2018 and includes 396 recognized individuals.Epidemiological dataWe obtained published data on four variables that control the disease dynamics of COVID-19 in humans, namely (a) the basic reproductive number (R0)34,35, (b) the infection fatality rate (IFR) based on estimates from China and Italy24,25,36,37, (c) the probability of developing immunity and (d) the duration of immunity37,38,39,41.Stochastic projection modelWe used the stochastic projection model proposed by Colchero et al.51, that models population dynamics for both sexes on fully age-dependent demographic rates. The model incorporates the yearly variance–covariance between demographic rates, while it accounts for infanticide as a function of the number of silverbacks (mature males > 12 years old) in the population51. Because of this relationship between infanticide and number of silverbacks, this source of mortality changes in time and cannot be assumed to be part of the infant mortality rate. To explore the extinction probability for the Karisoke subpopulation as a function of different diseases, we gathered information from the model on the proportion of individuals that died for each disease and the frequency of outbreaks (i.e., how often outbreaks occurred).Demographic-epidemiological projection model for COVID-19We constructed a predictive population model that combines the species’ baseline demographic rates with a model based on the susceptible-infected-recovered-susceptible (SIRS) framework. As the baseline demographic rates, we used the age-specific mortality and fecundity estimated by Colchero et al.51 for mountain gorillas (Karisoke subpopulation). We defined four epidemiological stages, namely (a) susceptible, (b) infected, (c) immune and (d) dead, each of which we further divided into a fully age-specific structure (Fig. 1). Based on recent research on COVID-19 on humans, we assumed that the dynamics of the model allowed for the recovered individuals to be divided into either susceptible or immune37,38,39,41. Furthermore, we incorporated the potential age-specific infection fatality rate (IFR) based on current estimates from medical and epidemiological research24,25,36,37, adjusted to the lifespan of the gorillas by means of the logistic function$$qleft(xright)=frac{{q}_{M}}{1+{text{exp}}left[-0.2left(x-25right)right]},$$
    (1)
    where qM is the maximum infected mortality probability. Similarly, we modeled the probability of developing immunity as a function of the strength of the disease, which, based on recent research, we measured as mirroring Eq. (1) as$$mleft(xright)=frac{{M}_{I}}{1+{text{exp}}left[-0.2left(x-25right)right]},$$
    (2)
    where MI is the maximum immunity probability (Fig. 2B).To explore the potential impact of COVID-19 on the growth rate of the Karisoke mountain gorilla subpopulation, we varied four of the critical epidemiological variables, namely (a) the basic reproductive number, R0, from 0.5 to 6 (which helps to simulate factors such as increased group density, which may increase the likelihood of transmission), (b) the maximum infected mortality probability, qM = (0.3, 0.6) (Fig. 2A), (c) the immunity duration, TI to 1, 3, 6, and 12 months, and (d) the maximum immunity probability, MI, from 0.2 to 0.8 (Fig. 2B). As time units we used year fractions in half months (i.e., t1 − t0 = 0.5/12), which allowed us to simplify the model, based on current information on the average time of serial interval and incubation period in humans21. This implementation assumes that susceptible individuals could become infected at the beginning of the time interval, while infected individuals in time interval t would either recover (immune or susceptible) or die in t + 1.The deterministic structure of the model implies that the number of individuals in each sex, age and epidemiological stage was given by the possible contribution from the other stages 1/2 month before. This is, the number of susceptible individuals of age x at time t is given by the difference equation$$begin{aligned} n_{s,x,t} & = p_{x – 1} left{ {n_{s,x – 1,t – 1} + n_{i,x – 1,t – 1} left[ {1 – qleft( {x – 1} right)} right]left[ {1 – mleft( {x – 1} right)} right]} right} \ & quad + n_{{m,x – T_{i} ,t – T_{i} }} prodlimits_{{j = x – T_{i} :j > 0}}^{x – 1} {p_{j} – n_{i,x,t} } , \ end{aligned}$$where the ns,x,t is the number of susceptible individuals of age x at time t, and subscripts i and m refer to infected and immune individuals, respectively. For simplicity of notation, we do not include a subscript for sex, although the model does distinguish between sexes. The probability px is the age-specific survival probability. Functions q(x) and m(x) are as in Eqs. (1) and (2). Similarly, the number of immune individuals at time t and age x are$${n}_{m,x,t}={n}_{i,x-1,t-1}left[1-qleft(x-1right)right]mleft(xright)+sum_{{j:0le jle {T}_{i}wedge x-j >0}}{p}_{x-j}{n}_{i,x-j,t-j}.$$We incorporated this mechanistic structure into a stochastic model, where all contributions from time t to t + 1 were drawn from binomial or Poisson distributions. For instance, the total new number of infected individuals, Ni,t, was obtained as a random draw from a Poisson distribution with expected value$$Eleft[{N}_{i,t}right]={text{min}}left[{{R}_{0}N}_{i,t-1},{N}_{t}right],$$where Nt is the total number of individuals in the study subpopulation. We then distributed randomly these individuals into different available ages and sex corresponding to the term ni,x,t, in the susceptible equation above. The number of newborns, Bx,t, at each age for which there were available females at time t was drawn from a binomial distribution with expected value$$Eleft[{B}_{x,t}right]=left({n}_{s,x,t}+{n}_{m,x,t}right){f}_{x}$$where fx is the age-specific average female fecundity rate and ns,x,t and nm,x,t refers to the number of susceptible and immune females, respectively, of age x at time t. The sex of each newborn was then determined by means of a Bernoulli draw with probability given by the proportion of males in the population. Thus, if the draw produced 1 for that individual, it became a male, and if 0 a female.For each scenario, we ran stochastic simulations for 2000 iterations for 10 years and recorded the average number of individuals at each age–sex and epidemiological state at every month. We then ran long-term stochastic simulations for four scenarios with R0 = 3 and maximum immunity probability MI = 0.2. For these, we recorded also the number of subpopulations that went extinct at each month. More

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    A global model to forecast coastal hardening and mitigate associated socioecological risks

    1.Dugan, J., Airoldi, L., Chapman, G. & Walker, S. in Treatise on Estuarine and Coastal Science Vol. 8 (eds Wolanski, E. & McLusky, D.) 17–41 (2011).2.Bugnot, A. B. et al. Current and projected global extent of marine built structures. Nat. Sustain. 4, 33–41 (2020).Article 

    Google Scholar 
    3.Connell, S. D. Floating pontoons create novel habitats for subtidal epibiota. J. Exp. Mar. Biol. Ecol. 247, 183–194 (2000).CAS 
    Article 

    Google Scholar 
    4.Glasby, T., Connell, S., Holloway, M. & Hewitt, C. Nonindigenous biota on artificial structures: could habitat creation facilitate biological invasions? Mar. Biol. 151, 887–895 (2007).Article 

    Google Scholar 
    5.Heery, E. C. et al. Identifying the consequences of ocean sprawl for sedimentary habitats. J. Exp. Mar. Biol. Ecol. 492, 31–48 (2017).Article 

    Google Scholar 
    6.Scherner, F. et al. Coastal urbanization leads to remarkable seaweed species loss and community shifts along the SW Atlantic. Mar. Pollut. Bull. 76, 106–115 (2013).CAS 
    Article 

    Google Scholar 
    7.Malerba, M. E., White, C. R. & Marshall, D. J. The outsized trophic footprint of marine urbanization. Front. Ecol. Environ. 17, 400–406 (2019).Article 

    Google Scholar 
    8.Dafforn, K. A., Glasby, T. M. & Johnston, E. L. Comparing the invasibility of experimental “reefs” with field observations of natural reefs and artificial structures. PLoS ONE 7, e38124 (2012).CAS 
    Article 

    Google Scholar 
    9.Airoldi, L., Turon, X., Perkol-Finkel, S. & Rius, M. Corridors for aliens but not for natives: effects of marine urban sprawl at a regional scale. Divers. Distrib. 21, 755–768 (2015).Article 

    Google Scholar 
    10.Hayes, K. R., Inglis, G. J. & Barry, S. C. The assessment and management of marine pest risks posed by shipping: the Australian and New Zealand experience. Front. Mar. Sci. https://doi.org/10.3389/fmars.2019.00489 (2019).11.Floerl, O., Inglis, G., Dey, K. L. & Smith, A. The importance of transport hubs in stepping-stone invasions. J. Appl. Ecol. 46, 37–45 (2009).Article 

    Google Scholar 
    12.Kaluza, P., Kolzsch, A., Gastner, M. T. & Blasius, B. The complex network of global cargo ship movements. J. R. Soc. Interface 7, 1093–1103 (2010).Article 

    Google Scholar 
    13.Aguirre, D. et al. Loved to pieces: toward the sustainable management of the Waitematā Harbour and Hauraki Gulf. Reg. Stud. Mar. Sci. 8, 220–233 (2016).Article 

    Google Scholar 
    14.Molnar, J. L., Gamboa, R. L., Revenga, C. & Spalding, M. D. Assessing the global threat of invasive species to marine biodiversity. Front. Ecol. Environ. 6, 485–492 (2008).Article 

    Google Scholar 
    15.Seto, K. C., Güneralp, B. & Hutyra, L. R. Global forecasts of urban expansion to 2030 and direct impacts on biodiversity and carbon pools. Proc. Natl Acad. Sci. USA 109, 16083–16088 (2012).CAS 
    Article 

    Google Scholar 
    16.Neumann, B., Vafeidis, A. T., Zimmermann, J. & Nicholls, R. J. Future coastal population growth and exposure to sea-level rise and coastal flooding—a global assessment. PLoS ONE 10, e0118571 (2015).Article 
    CAS 

    Google Scholar 
    17.Kulp, S. A. & Strauss, B. H. New elevation data triple estimates of global vulnerability to sea-level rise and coastal flooding. Nat. Commun. 10, 4844 (2019).CAS 
    Article 

    Google Scholar 
    18.Lombard, A. T. et al. Practical approaches and advances in spatial tools to achieve multi-objective marine spatial planning. Front. Mar. Sci. https://doi.org/10.3389/fmars.2019.00166 (2019).19.Pelling, M. & Blackburn, S. Megacities and the Coast: Risk, Resilience and Transformation (Routledge, 2013).20.Sutton-Grier, A. E., Wowk, K. & Bamford, H. Future of our coasts: the potential for natural and hybrid infrastructure to enhance the resilience of our coastal communities, economies and ecosystems. Environ. Sci. Policy 51, 137–148 (2015).Article 

    Google Scholar 
    21.Keller, R., Drake, J., Drew, M. & Lodge, D. Linking environmental conditions and ship movements to estimate invasive species transport across the global shipping network. Divers. Distrib. 17, 93–102 (2011).Article 

    Google Scholar 
    22.How Can We Meet Increasing Demand for Ports in the Upper North Island? A Report for the Upper North Island Strategic Alliance (PricewaterhouseCoopers, 2012).23.Ernst & Young Port Future Study. A Report Prepared for Auckland Council (Auckland Council, 2016).24.NZIER Bigger Ships—Past, Present and Future Implications for New Zealand Supply Chains (New Zealand Economic Research Institute, 2017).25.Hino, M., Belanger, S. T., Field, C. B., Davies, A. R. & Mach, K. J. High-tide flooding disrupts local economic activity. Sci. Adv. 5, eaau2736 (2019).Article 

    Google Scholar 
    26.United Nations Review of Maritime Transport 109 (United Nations Conference on Trade and Development, 2019).27.Ferrario, F., Iveša, L., Jaklin, A., Perkol-Finkel, S. & Airoldi, L. The overlooked role of biotic factors in controlling the ecological performance of artificial marine habitats. J. Appl. Ecol. 53, 16–24 (2016).Article 

    Google Scholar 
    28.Firth, L. et al. Ocean sprawl: challenges and opportunities for biodiversity management in a changing world. Oceanogr. Mar. Biol. 54, 189–262 (2016).
    Google Scholar 
    29.Mayer-Pinto, M. et al. Functional and structural responses to marine urbanisation. Environ. Res. Lett. 13, 014009 (2018).Article 

    Google Scholar 
    30.Bannister, J., Sievers, M., Bush, F. & Bloecher, N. Biofouling in marine aquaculture: a review of recent research and developments. Biofouling 35, 631–648 (2019).CAS 
    Article 

    Google Scholar 
    31.Colautti, R. I., Bailey, S. A., van Overdijk, C. D. A., Amundsen, K. & MacIsaac, H. J. Characterised and projected costs of nonindigenous species in Canada. Biol. Invasions 8, 45–59 (2006).Article 

    Google Scholar 
    32.Mazur, K., Bath, A., Curtotti, R. & Summerson, R. An Assessment of the Non-market Value of Reducing the Risk of Marine Pest Incursions in Australia’s Waters (Australian Bureau of Agricultural and Resource Economics and Sciences, 2018).33.Hatami, R. et al. Improving New Zealand’s Marine Biosecurity Surveillance Programme Biosecurity New Zealand Technical Paper No. 2021/01 (Ministry for Primary Industries, 2021).34.Sardain, A., Sardain, E. & Leung, B. Global forecasts of shipping traffic and biological invasions to 2050. Nat. Sustain. 2, 274–282 (2019).Article 

    Google Scholar 
    35.Monios, J., Bergqvist, R. & Woxenius, J. Port-centric cities: the role of freight distribution in defining the port-city relationship. J. Transp. Geogr. 66, 53–64 (2018).Article 

    Google Scholar 
    36.The Ocean Economy in 2030 (Organisation for Economic Co-operation and Development, 2016).37.Halpern, B. S. et al. Recent pace of change in human impact on the world’s ocean. Sci. Rep. 9, 11609 (2019).Article 
    CAS 

    Google Scholar 
    38.Dafforn, K. A. et al. Marine urbanization: an ecological framework for designing multifunctional artificial structures. Front. Ecol. Environ. 13, 82–90 (2015).Article 

    Google Scholar 
    39.Diggon, S. et al. The marine plan partnership: Indigenous community-based marine spatial planning. Mar. Policy https://doi.org/10.1016/j.marpol.2019.04.014 (2019).40.Noble, M. M., Harasti, D., Pittock, J. & Doran, B. Understanding the spatial diversity of social uses, dynamics, and conflicts in marine spatial planning. J. Environ. Manag. 246, 929–940 (2019).Article 

    Google Scholar 
    41.Abhinav, K. A. et al. Offshore multi-purpose platforms for a blue growth: a technological, environmental and socio-economic review. Sci. Total Environ. 734, 138256 (2020).CAS 
    Article 

    Google Scholar 
    42.Jacob, C., Buffard, A., Pioch, S. & Thorin, S. Marine ecosystem restoration and biodiversity offset. Ecol. Eng. 120, 585–594 (2018).Article 

    Google Scholar 
    43.Hopkins, G. A. et al. Continuous bubble streams for controlling marine biofouling on static artificial structures. PeerJ 9, e11323 (2021).Article 

    Google Scholar 
    44.Vucko, M. J. et al. Cold spray metal embedment: an innovative antifouling technology. Biofouling 28, 239–248 (2012).CAS 
    Article 

    Google Scholar 
    45.Atalah, J., Newcombe, E. M., Hopkins, G. A. & Forrest, B. M. Potential biocontrol agents for biofouling on artificial structures. Biofouling 30, 999–1010 (2014).CAS 
    Article 

    Google Scholar 
    46.Airoldi, L. et al. Emerging solutions to return nature to the urban ocean. Ann. Rev. Mar. Sci. 13, 445–477 (2021).Article 

    Google Scholar 
    47.Keeley, N., Wood, S. A. & Pochon, X. Development and preliminary validation of a multi-trophic metabarcoding biotic index for monitoring benthic organic enrichment. Ecol. Indic. 85, 1044–1057 (2018).CAS 
    Article 

    Google Scholar 
    48.Zaiko, A., Pochon, X., Garcia-Vazquez, E., Olenin, S. & Wood, S. A. Advantages and limitations of environmental DNA/RNA tools for marine biosecurity: management and surveillance of non-indigenous species. Front. Mar. Sci. https://doi.org/10.3389/fmars.2018.00322 (2018).49.Cristescu, M. E. Can environmental RNA revolutionize biodiversity science? Trends Ecol. Evol. 34, 694–697 (2019).Article 

    Google Scholar 
    50.Chakravarthy, K., Charters, F. & Cochrane, T. The impact of urbanisation on New Zealand freshwater quality. Policy Q. 15, 17–21 (2019).Article 

    Google Scholar 
    51.Gittman, R. K. et al. Engineering away our natural defenses: an analysis of shoreline hardening in the US. Front. Ecol. Environ. 13, 301–307 (2015).Article 

    Google Scholar 
    52.Hume, T. M., Snelder, T., Weatherhead, M. & Liefting, R. A controlling factor approach to estuary classification. Ocean Coast. Manag. 50, 905–929 (2007).Article 

    Google Scholar 
    53.Breiman, L. Random forests. Mach. Learn. 45, 5–32 (2001).Article 

    Google Scholar 
    54.Prasad, A. M., Iverson, L. R. & Liaw, A. Newer classification and regression tree techniques: bagging and random forests for ecological prediction. Ecosystems 9, 181–199 (2006).Article 

    Google Scholar 
    55.Olden, J. D., Lawler, J. J. & Poff, N. L. Machine learning methods without tears: a primer for ecologists. Q. Rev. Biol. 83, 171–193 (2008).Article 

    Google Scholar 
    56.Kursa, M. B. & Rudnicki, W. R. Feature selection with the boruta package. J. Stat. Softw. 36, 1–13 (2010).Article 

    Google Scholar 
    57.Zuur, A. F., Leno, E. N. & Elphick, C. S. A protocol for data exploration to avoid common statistical problems. Methods Ecol. Evol. 1, 3–14 (2010).Article 

    Google Scholar 
    58.Liaw, A. & Wiener, M. Classification and regression by randomForest. R News 2, 18–22 (2002).
    Google Scholar 
    59.Kuhn, M. et al. caret: Classification and Regression Training (CRAN, 2019); https://CRAN.R-project.org/package=caret60.Ministry for the Environment & Stats NZ. New Zealand’s Environmental Reporting Series: Environment Aotearoa 2019 (Ministry for the Environment, 2019). More

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    Next-generation ensemble projections reveal higher climate risks for marine ecosystems

    1.IPCC Special Report on the Ocean and Cryosphere in a Changing Climate (eds Pörtner, H.-O. et al.) (IPCC, 2019).2.Doney, S. C. et al. Climate change impacts on marine ecosystems. Ann. Rev. Mar. Sci. 4, 11–37 (2012).Article 

    Google Scholar 
    3.Bindoff, N. L. et al. in Special Report on the Ocean and Cryosphere in a Changing Climate (eds Pörtner, H.-O. et al.) Ch. 5 (IPCC, 2019).4.Griffith, G. P., Fulton, E. A., Gorton, R. & Richardson, A. J. Predicting interactions among fishing, ocean warming, and ocean acidification in a marine system with whole-ecosystem models. Conserv. Biol. 26, 1145–1152 (2012).Article 

    Google Scholar 
    5.Fu, C. et al. Risky business: the combined effects of fishing and changes in primary productivity on fish communities. Ecol. Modell. 368, 265–276 (2018).Article 

    Google Scholar 
    6.Tittensor, D. P. et al. Integrating climate adaptation and biodiversity conservation in the global ocean. Sci. Adv. https://doi.org/10.1126/sciadv.aay9969 (2019).7.IPBES: Summary for Policymakers. In Global Assessment Report on Biodiversity and Ecosystem Services (eds Díaz, S. et al.) (IPBES Secretariat, 2019).8.Boyce, D. G., Lotze, H. K., Tittensor, D. P., Carozza, D. A. & Worm, B. Future ocean biomass losses may widen socioeconomic equity gaps. Nat. Commun. 11, 2235 (2020).CAS 
    Article 

    Google Scholar 
    9.Payne, M. R. et al. Uncertainties in projecting climate-change impacts in marine ecosystems. ICES J. Mar. Sci. 73, 1272–1282 (2016).Article 

    Google Scholar 
    10.Eyring, V. et al. Overview of the Coupled Model Intercomparison Project Phase 6 (CMIP6) experimental design and organization. Geosci. Model Dev. 9, 1937–1958 (2016).Article 

    Google Scholar 
    11.Tittensor, D. P. et al. A protocol for the intercomparison of marine fishery and ecosystem models: Fish-MIP v1.0. Geosci. Model Dev. 11, 1421–1442 (2018).Article 

    Google Scholar 
    12.Lotze, H. K. et al. Global ensemble projections reveal trophic amplification of ocean biomass declines with climate change. Proc. Natl Acad. Sci. USA 116, 12907–12912 (2019).CAS 
    Article 

    Google Scholar 
    13.Bryndum-Buchholz, A. et al. Twenty-first-century climate change impacts on marine animal biomass and ecosystem structure across ocean basins. Glob. Change Biol. 25, 459–472 (2019).Article 

    Google Scholar 
    14.Bryndum-Buchholz, A. et al. Differing marine animal biomass shifts under 21st century climate change between Canada’s three oceans. Facets 5, 105–122 (2020).Article 

    Google Scholar 
    15.Bryndum-Buchholz, A. et al. Climate-change impacts and fisheries management challenges in the North Atlantic Ocean. Mar. Ecol. Prog. Ser. 648, 1–17 (2020).Article 

    Google Scholar 
    16.Ruane, A. C. et al. The vulnerability, impacts, adaptation and climate services advisory board (VIACS AB v1.0) contribution to CMIP6. Geosci. Model Dev. 9, 3493–3515 (2016).Article 

    Google Scholar 
    17.Kwiatkowski, L. et al. Twenty-first century ocean warming, acidification, deoxygenation, and upper-ocean nutrient and primary production decline from CMIP6 model projections. Biogeosciences 17, 3439–3470 (2020).CAS 
    Article 

    Google Scholar 
    18.Séférian, R. et al. Tracking improvement in simulated marine biogeochemistry between CMIP5 and CMIP6. Curr. Clim. Change Rep. 6, 95–119 (2020).Article 

    Google Scholar 
    19.Meehl, G. A. et al. Context for interpreting equilibrium climate sensitivity and transient climate response from the CMIP6 Earth system models. Sci. Adv. 6, eaba1981 (2020).Article 

    Google Scholar 
    20.Tebaldi, C. et al. Climate model projections from the Scenario Model Intercomparison Project (ScenarioMIP) of CMIP6. Earth Syst. Dyn. 12, 253–293 (2021).Article 

    Google Scholar 
    21.Heneghan, R. F. et al. Disentangling diverse responses to climate change among global marine ecosystem models. Prog. Oceanogr. 198, 102659 (2021).Article 

    Google Scholar 
    22.Zelinka, M. D. et al. Causes of higher climate sensitivity in CMIP6 models. Geophys. Res. Lett. 47, e2019GL085782 (2020).Article 

    Google Scholar 
    23.Kwiatkowski, L. et al. Emergent constraints on projections of declining primary production in the tropical oceans. Nat. Clim. Change 7, 355–358 (2017).CAS 
    Article 

    Google Scholar 
    24.Cabré, A., Marinov, I. & Leung, S. Consistent global responses of marine ecosystems to future climate change across the IPCC AR5 Earth system models. Clim. Dyn. 45, 1253–1280 (2015).Article 

    Google Scholar 
    25.Laufkötter, C. et al. Drivers and uncertainties of future global marine primary production in marine ecosystem models. Biogeosciences 12, 6955–6984 (2015).Article 

    Google Scholar 
    26.Doney, S. C. Plankton in a warmer world. Nature 444, 695–696 (2006).CAS 
    Article 

    Google Scholar 
    27.Rykaczewski, R. R. & Dunne, J. P. Enhanced nutrient supply to the California Current Ecosystem with global warming and increased stratification in an Earth system model. Geophys. Res. Lett. 37, L21606 (2010).Article 

    Google Scholar 
    28.Laufkötter, C., John, J. G., Stock, C. A. & Dunne, J. P. Temperature and oxygen dependence of the remineralization of organic matter. Glob. Biogeochem. Cycles 31, 1038–1050 (2017).Article 
    CAS 

    Google Scholar 
    29.Coll, M. et al. Advancing global ecological modeling capabilities to simulate future trajectories of change in marine ecosystems. Front. Mar. Sci. 7, 741 (2020).Article 

    Google Scholar 
    30.Hawkins, E. & Sutton, R. The potential to narrow uncertainty in regional climate predictions. Bull. Am. Meteorol. Soc. 90, 1095–1107 (2009).Article 

    Google Scholar 
    31.Frölicher, T. L., Rodgers, K. B., Stock, C. A. & Cheung, W. W. L. Sources of uncertainties in 21st century projections of potential ocean ecosystem stressors. Glob. Biogeochem. Cycles 30, 1224–1243 (2016).Article 
    CAS 

    Google Scholar 
    32.Gaines, S. D. et al. Improved fisheries management could offset many negative effects of climate change. Sci. Adv. 4, eaao1378 (2018).Article 

    Google Scholar 
    33.The State of World Fisheries and Aquaculture 2020 (FAO, 2020).34.Dahlke, F. T., Wohlrab, S., Butzin, M. & Pörtner, H.-O. Thermal bottlenecks in the life cycle define climate vulnerability of fish. Science 369, 65–70 (2020).CAS 
    Article 

    Google Scholar 
    35.Stuart-Smith, R. D., Edgar, G. J. & Bates, A. E. Thermal limits to the geographic distributions of shallow-water marine species. Nat. Ecol. Evol. 1, 1846–1852 (2017).Article 

    Google Scholar 
    36.Carozza, D. A., Bianchi, D. & Galbraith, E. D. Metabolic impacts of climate change on marine ecosystems: implications for fish communities and fisheries. Glob. Ecol. Biogeogr. 28, 158–169 (2019).Article 

    Google Scholar 
    37.du Pontavice, H., Gascuel, D., Reygondeau, G., Stock, C. & Cheung, W. W. L. Climate-induced decrease in biomass flow in marine food webs may severely affect predators and ecosystem production. Glob. Change Biol. 27, 2608–2622 (2021).Article 

    Google Scholar 
    38.Piroddi, C. et al. Effects of nutrient management scenarios on marine food webs: a pan-European assessment in support of the marine strategy framework directive. Front. Mar. Sci. 8, 179 (2021).Article 

    Google Scholar 
    39.Maury, O. An overview of APECOSM, a spatialized mass balanced ‘Apex Predators ECOSystem Model’ to study physiologically structured tuna population dynamics in their ecosystem. Prog. Oceanogr. 84, 113–117 (2010).Article 

    Google Scholar 
    40.Maury, O. & Poggiale, J. C. From individuals to populations to communities: a dynamic energy budget model of marine ecosystem size-spectrum including life history diversity. J. Theor. Biol. 324, 52–71 (2013).Article 

    Google Scholar 
    41.Carozza, D. A., Bianchi, D. & Galbraith, E. D. The ecological module of BOATS-1.0: a bioenergetically-constrained model of marine upper trophic levels suitable for studies of fisheries and ocean biogeochemistry. Geosci. Model Dev. 9, 1545–1565 (2016).Article 

    Google Scholar 
    42.Carozza, D. A. et al. Formulation, general features and global calibration of a bioenergetically-constrained fishery model. PLoS ONE 12, e0169763 (2017).Article 
    CAS 

    Google Scholar 
    43.Cheung, W. W. L. et al. Building confidence in projections of the responses of living marine resources to climate change. ICES J. Mar. Sci. https://doi.org/10.1093/icesjms/fsv250 (2016).Article 

    Google Scholar 
    44.Cheung, W. W. L., Dunne, J., Sarmiento, J. L. & Pauly, D. Integrating ecophysiology and plankton dynamics into projected maximum fisheries catch potential under climate change in the Northeast Atlantic. ICES J. Mar. Sci. 68, 1008–1018 (2011).Article 

    Google Scholar 
    45.Blanchard, J. L. et al. Potential consequences of climate change for primary production and fish production in large marine ecosystems. Phil. Trans. R. Soc. B 367, 2979–2989 (2012).Article 

    Google Scholar 
    46.Christensen, V. et al. The global ocean is an ecosystem: simulating marine life and fisheries. Glob. Ecol. Biogeogr. 24, 507–517 (2015).Article 

    Google Scholar 
    47.Gascuel, D., Guénette, S. & Pauly, D. The trophic-level-based ecosystem modelling approach: theoretical overview and practical uses. ICES J. Mar. Sci. 68, 1403–1416 (2011).Article 

    Google Scholar 
    48.Petrik, C. M., Stock, C. A., Andersen, K. H., van Denderen, P. D. & Watson, J. R. Bottom-up drivers of global patterns of demersal, forage, and pelagic fishes. Prog. Oceanogr. 176, 102124 (2019).Article 

    Google Scholar 
    49.Jennings, S. & Collingridge, K. Predicting consumer biomass, size-structure, production, catch potential, responses to fishing and associated uncertainties in the world’s marine ecosystems. PLoS ONE 10, e0133794 (2015).Article 
    CAS 

    Google Scholar 
    50.Heneghan, R. F. et al. A functional size-spectrum model of the global marine ecosystem that resolves zooplankton composition. Ecol. Modell. 435, 109265 (2020).CAS 
    Article 

    Google Scholar 
    51.Dunne, J. P. et al. GFDL’s ESM2 global coupled climate–carbon Earth system models. Part I: physical formulation and baseline simulation characteristics. J. Clim. 25, 6646–6665 (2012).Article 

    Google Scholar 
    52.Dunne, J. P. et al. Carbon Earth system models. Part II: carbon system formulation and baseline simulation characteristics. J. Clim. 26, 2247–2267 (2013).Article 

    Google Scholar 
    53.Dufresne, J.-L. et al. Climate change projections using the IPSL-CM5 Earth system model: from CMIP3 to CMIP5. Clim. Dyn. 40, 2123–2165 (2013).Article 

    Google Scholar 
    54.Dunne, J. P. et al. The GFDL Earth System Model Version 4.1 (GFDL-ESM 4.1): overall coupled model description and simulation characteristics. J. Adv. Model. Earth Syst. 12, e2019MS002015 (2020).
    Google Scholar 
    55.Krasting, J. P. et al. NOAA-GFDL GFDL-ESM4 Model Output Prepared for MIP6 CMIP Historical Version 20190726 (Earth System Grid Federation, 2018); https://doi.org/10.22033/ESGF/CMIP6.859756.John, J. G. et al. NOAA-GFDL GFDL-ESM4 Model Output Prepared for CMIP6 ScenarioMIP ssp585 Version 20180701 (Earth System Grid Federation, 2018); https://doi.org/10.22033/ESGF/CMIP6.870657.Boucher, O. et al. Presentation and evaluation of the IPSL-CM6A-LR climate model. J. Adv. Model. Earth Syst. 12, e2019MS002010 (2020).Article 

    Google Scholar 
    58.Boucher, O. et al. IPSL IPSL-CM6A-LR Model Output Prepared for CMIP6 CMIP Version 20180727 (Earth System Grid Federation, 2018); https://doi.org/10.22033/ESGF/CMIP6.153459.Boucher, O. et al. IPSL IPSL-CM6A-LR Model Output Prepared for CMIP6 CMIP Historical Version 20180103 (Earth System Grid Federation, 2018); https://doi.org/10.22033/ESGF/CMIP6.5195 More

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    Climatic signatures in the different COVID-19 pandemic waves across both hemispheres

    Global statistical analysisOur first attempt to identify plausible effects of meteorological covariates on COVID-19 spread applied a comparative regression analysis. To this end, we focused on the exponential onset of the disease, as it is the epidemic phase that allows for a better comparison between countries or regions, without the confounding effect of intervention policies. We first determined, for each of the spatial units (either countries or NUTS (nomenclature of territorial units for statistics) 2 regions), the day in which 20 or more cumulative cases were officially reported. We then fitted the first-order polynomial function f(t) = x0 + rt for the next 20 days of log-transformed data, where t represents time (in days) and ({{x}_0}) is the value at initial condition t = 0. The r parameter can be understood as the exponential growth rate, and is then used to estimate the basic reproduction number (R0) using the estimated serial interval T for COVID-19 of 4.7 days53, such that R0 = 1 + rT (ref. 54). (We note that we are interested here in the relationship between the reproductive number and not in the actual inference of R0.) Once R0 was obtained for all our spatial units, we filtered our meteorological data to match the same fitting period (with a 10-day negative delay to account for an incubation and reporting lapse) for every spatial unit. To compute a single average of the meteorological variables per regional unit, we computed a weighted average on the basis of the population contribution of each grid cell to the total population of the region. We did so to have an aggregated value that would better represent the impact of these factors on the population transmission of COVID-19, as the same variation in weather in a high-density urban area is more likely to contribute to a change in population-level transmission than that of an unpopulated rural area. We then averaged the daily values of temperature and AH for each country and computed univariate linear models for each of these variables as predictors of R0. Given the somewhat arbitrary criteria to select the dates to estimate the R0 in each country, a sensitivity analysis was run to test the robustness of the regressions to changes in the related parameters. We tested 70 different combinations of two parameters: the total number of days used for the fit (18–27) and the threshold of cumulative COVID-19 cases used to select the initial day of the fit (15–45). We also calculated the weather averages by shifting the selected dates accordingly. Then, a linear model for each of the estimates was fitted for both T and AH. A summary of the distribution of parameter estimates (the regression slope coefficients and the R2 of the models) is shown in Extended Data Fig. 3.Bivariate time-series analysis with scale-dependent correlationsTo examine associations between cases and climate factors in more detail, SDC was performed on the daily time series of both COVID-19 incidence and a given meteorological variable. SDC is an optimal method for identifying dynamical couplings in short and noisy time series20,21. In general, Spearman correlations between incidence and a meteorological time series assess whether there is a monotonic relation between the variables. SDC analysis was specifically developed to study transitory associations that are local in time at a specified temporal scale corresponding to the size of the time intervals considered (s). The two-way implementation (TW-SDC) is a bivariate method that computes non-parametric Spearman rank correlations between two time series, for different pairs of time intervals along these series. Different window sizes (s) can be used to examine increasingly finer temporal resolution. The results are sensitive to the value of this window size, s, with expected significant and highest correlation values at the scale of the transient coupling between variables. Correlation values decrease in magnitude as window size increases, and averages are computed over too long a time interval. Values can also decrease and become non-significant for small windows when correlations are spurious. Here, the method was applied for windows of different length (from s = 75 to 14 days) and, despite a weekly cycle showing up in some cases for small s, results removing this cycle were robust. We therefore did not remove this cycle.The results are typically displayed in a figure with the following subplots: (1) the two time series, to the left and top of the matrix of correlation values, respectively; (2) the matrix or grid of correlation values itself in the center, with significant correlations colored in blue when positive and in red when negative, with rows and columns corresponding to the temporal localization of the moving window along the time series on the left and top, respectively; (3) a time series at the bottom, below this grid, with the highest significant correlations for a given time (vertically, and therefore for the variable that acts as the driver, here the meteorological time series). To read the results, one starts at the diagonal and moves vertically down from it to identify a given lag for which significant correlations are found (the closest to the main diagonal). In some of the SDC figures, the time intervals with high local correlations are highlighted with boxes. These intervals alternate with other ones (left blank) for which no significant correlation is found. All colored areas correspond to significance levels of at least P  fs/fr, where fs is the sampling rate and fr the minimum frequency. Another strategy is that M be large enough that the M-lagged vector incorporates the temporal scale of the time series that is of interest. The larger the M, the more detailed the resulting decomposition of the signal. In particular, the most detailed decomposition is achieved when the embedding dimension is approximately equal to half of the total signal length. A compromise must be reached, however, as a large M implies increased computation, and too large a value may produce mixing of components. SSA is especially well suited for separating components corresponding to different frequencies in nonlinear systems. Here, we applied it to remove the weekly cycle.MSDC analysisMSDC provides a scan of the SDC analyses over a range of different scales (here, S from 5 to 100 days at 5-day intervals), by selecting the maximum correlation values (positive or negative) closer to the diagonal. The goal is to consider the evolution of transient correlations at all scales pooled together in a single analysis. The MSDC plot displays time on the x axis and scale (S) on the y axis, and positive and negative correlations either jointly or separately. The rationale behind MSDC is that correlations at very small scales can occur by chance because of coincident similar patterns, but that as one moves up to larger scales (by increasing S), the correlation patterns that are spurious tend to vanish, whereas those reflecting mechanistic links increase in strength. This increase in correlation values should occur up to the real scale of interaction, decreasing afterwards. By ‘real’, we mean here the temporal scale covering the extent of the interaction between the driver and the response process (in this case, the response of disease transmission to a given climate factor). Thus, continuity of the same sign correlations together with transitions to larger values are indicative of causal effects, whereas the rapid vanishing of small-scale significant correlations signals spurious ones.Process-based modelDescriptionThe dynamical model is a discrete stochastic model that incorporates seven different compartments: S, E, I, C, Q, R and D. The model structure is illustrated in Fig. 4. The transition probabilities of the stochastic model are based on the corresponding rates of the transitions between classes in the deterministic (mean-field) model (specified in Fig. 4b). These probabilities are defined as follows. P(e) = (1.0 − exp(−β dt)) is the probability of infection exposure of the susceptible class, where β = (1/N)(βII + βQQ) is the infection rate (of the deterministic model). P(i) = (1.0 − exp(−γ dt)) is the probability that an new exposed individual becomes infectious, where γ denotes the incubation rate. P(r) = (1.0 − exp(−Λ dt)) is the recovery probability, where λ0(1 − exp(λ1t)) is the (deterministic) recovery rate. P(p) = (1.0 − exp(−α dt)) is the protection probability, where α = α0exp(α1t). P(d) = (1.0 − exp(−K dt)) is the mortality probability, with K = k0exp(k1t). P(re) = (1.0 − exp(−τ dt)) is the release probability from confinement, where τ = τ0exp(τ1t). Finally, P(q) = (1.0 − exp(−δ  dt)) is the detection probability, where δ is the quarantine rate (for example, at which infected individuals are isolated from the rest of the population).In the model, both infected non-detected and infected detected individuals can infect susceptible ones. In the model incorporating temperature in the transmission rate, the respective values of βI and βQ are calculated as follows:$${beta }_{I}(t)={beta }_{I},T_{mathrm{inv}}(t);quad {beta }_{Q}(t)={beta }_{Q},T_{mathrm{inv}}(t)$$where (T_{mathrm{inv}}=fleft(frac{1-T(t)}{bar{T}}right)), with (bar{T}) corresponding to the overall mean of the temperature time series and f(·) to a Savitzky–Golay filter, used to smooth the temperature series with a window size of 50 data points and a polynomial order of 3. When the infection rate is constant, we simply omit the temperature term. For further comparison, in a third model, β is specified with a sinusoidal function of period equal to 12 months and an estimated phase.The number of individuals transitioning from compartment i to j at time t are determined by means of binomial distributions P(Xi,P(y)), where Xi corresponds to one of the compartments S, E, I, Q, R, D, C, and P(y) to the respective transition probability defined above. Thus,

    e(t) = P(S(t), P(e)), new exposed individuals at time t

    p(t) = P(S(t), P(p)), protected individuals at time t

    i(t) = P(E(t), P(i)), new infected not detected individuals at time t

    q(t) = P(I(t), P(q)), new infected and detected individuals at time t

    r(t) = P(Q(t), P(r)), total recovered individuals at time t

    d(t) = P(Q(t), P(d)), total dead individuals at time t

    re(t) = P(C(t), P(re)), individuals released from confinement at time t

    Then, the final dynamics are given by the following equations:$$S(t)=S(t-{rm{d}}t)-e(t)-p(t)+re(t)$$$$E(t)=E(t-{rm{d}}t)+e(t)-i(t)$$$$I(t)=I(t-{rm{d}}t)+i(t)-q(t)$$$$Q(t)=Q(t-{rm{d}}t)+q(t)-r(t)-d(t)$$$$R(t)=R(t-{rm{d}}t)+r(t)$$$$D(t)=D(t-{rm{d}}t)+d(t)$$$$C(t)=C(t-{rm{d}}t)+p(t)-re(t)$$CalibrationThe model was implemented using Python and calibrated by means of the least squares algorithm of the scipy library. The error function minimized with this algorithm was obtained from the normalized residuals on the basis of total cases (Q + R + D) and deaths (D).To search parameter space, we ran 100 calibrations starting from different initial choices of parameter combinations. The tolerance for termination in the change of the cost function was set to 1 × 10−10. Tolerance for termination by the norm of the gradient was also set to 1 × 10−10, and the tolerance for termination by the change of the independent variables was set to 1 × 10−10. The solver was the lsmr method (which is suitable for problems with sparse and large Jacobian matrices) with a differential step of 1 × 10−5. With this configuration, each fitting run usually converged after ~500 iterations.ValidationTo compare the model including an effect of T in the transmission rate to those without it, we calculated the chi-square, Akaike information criterion (AIC) and Bayesian information criterion (BIC) indices for the residuals obtained from the optimization process. The resulting values are shown in Supplementary Table 1.Our choice of T to modulate the infection rate (β) instead of AH underlies the fact that the temporal dynamics of both factors roughly follow the same shape, with the advantage that T shows less oscillatory behavior than AH. This fact adds stability to the model when the inverse relationship is used in the calculation of β (Supplementary Information). This selection is further reinforced by the results from the SDC analyses, which yielded larger correlations for temperature, even when penalizing for the larger autocorrelation structure.Our choice to modulate β using T instead of AH follows from the fact that the temporal dynamics of both climate variables present roughly the same shape, with the advantage that T exhibits weaker oscillations. This less fluctuating pattern provides stability to the model fitting when the inverse relationship is used in the calculation of β (Supplementary Information). Additionally, the transient correlations obtained with SDC yielded higher values for T than for AH (even when accounting for concurrent levels of autoregression in the two variables). More

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    Climate impacts and adaptation in US dairy systems 1981–2018

    1.Dairy Production and Products: Milk and Milk Products (FAO, 2013); http://www.fao.org/dairy-production-products/production/dairy-animals/cattle/en/2.Background: Corn and Other Feedgrains (USDA ERS, 2018); https://www.ers.usda.gov/topics/animal-products/dairy/background/3.National Agricultural Statistics Service (US Department of Agriculture); https://www.nass.usda.gov/index.php4.Capper, J. L., Cady, R. A. & Bauman, D. E. The environmental impact of dairy production: 1944 compared with 2007. J. Anim. Sci. 87, 2160–2167 (2009).CAS 
    Article 

    Google Scholar 
    5.Niles, M. T. & Wiltshire, S. Tradeoffs in US dairy manure greenhouse gas emissions, productivity, climate, and manure management strategies. Environ. Res. Commun 1, 075003 (2019).Article 

    Google Scholar 
    6.Field, T. G. & Taylor, R. E. Scientific Farm Animal Production: An Introduction, Eleventh Edition (Pearson, 2018).7.Fuquay, J. W. Heat stress as it affects animal production. J. Anim. Sci. 52, 164–174 (1981).CAS 
    Article 

    Google Scholar 
    8.St-Pierre, N. R., Cobanov, B. & Schnitkey, G. Economic losses from heat stress by US livestock industries. J. Dairy Sci. 86, E52–E77 (2003).Article 

    Google Scholar 
    9.Kadzere, C. T., Murphy, M. R., Silanikove, N. & Maltz, E. Heat stress in lactating dairy cows: a review. Livest. Prod. Sci. 77, 59–91 (2002).Article 

    Google Scholar 
    10.Bouraoui, R., Lahmar, M., Majdoub, A., Djemali, M. & Belyea, R. The relationship of temperature–humidity index with milk production of dairy cows in a Mediterranean climate. Anim. Res. 51, 479–491 (2002).Article 

    Google Scholar 
    11.West, J. W. Effects of heat-stress on production in dairy cattle. J. Dairy Sci. 86, 2131–2144 (2003).CAS 
    Article 

    Google Scholar 
    12.Vitali, A. et al. Seasonal pattern of mortality and relationships between mortality and temperature–humidity index in dairy cows. J. Dairy Sci. 92, 3781–3790 (2009).CAS 
    Article 

    Google Scholar 
    13.Pragna, P. et al. Heat stress and dairy cow: impact on both milk yield and composition. Int. J. Dairy Sci. 12, 1–11 (2017).CAS 
    Article 

    Google Scholar 
    14.Hoffmann, I. Climate change and the characterization, breeding and conservation of animal genetic resources. Anim. Genet. 41, 32–46 (2010).Article 

    Google Scholar 
    15.Qi, L., Bravo-Ureta, B. E. & Cabrera, V. E. From cold to hot: a preliminary analysis of climatic effects on the productivity of Wisconsin dairy farms. AgEconSearch https://doi.org/10.22004/ag.econ.172411 (2014).16.Bohmanova, J., Misztal, I. & Cole, J. B. Temperature–humidity indices as indicators of milk production losses due to heat stress. J. Dairy Sci. 90, 1947–1956 (2007).CAS 
    Article 

    Google Scholar 
    17.Field, C. B. et al. Managing the Risks of Extreme Events and Disasters to Advance Climate Change Adaptation (IPCC, 2021); https://www.ipcc.ch/report/managing-the-risks-of-extreme-events-and-disasters-to-advance-climate-change-adaptation/18.Mueller, N. D. et al. Cooling of US Midwest summer temperature extremes from cropland intensification. Nat. Clim. Chang. 6, 317–322 (2016).ADS 
    MathSciNet 
    Article 

    Google Scholar 
    19.Seneviratne, S. I., Donat, M. G., Mueller, B. & Alexander, L. V. No pause in the increase of hot temperature extremes. Nat. Clim. Chang. 4, 161–163 (2014).ADS 
    Article 

    Google Scholar 
    20.Dairy 2014: Dairy Cattle Management Practices in the United States, 2014 (USDA, APHIS, NAHMS, 2016); https://www.aphis.usda.gov/animal_health/nahms/dairy/downloads/dairy14/Dairy14_dr_PartI_1.pdf21.Mondaca, M. R. & Cook, N. B. Modeled construction and operating costs of different ventilation systems for lactating dairy cows. J. Dairy Sci. 102, 896–908 (2019).CAS 
    Article 

    Google Scholar 
    22.Ferreira, F. C., Gennari, R. S., Dahl, G. E. & De Vries, A. Economic feasibility of cooling dry cows across the United States. J. Dairy Sci. 99, 9931–9941 (2016).CAS 
    Article 

    Google Scholar 
    23.Hayhoe, K. et al. Emissions pathways, climate change, and impacts on California. Proc. Natl Acad. Sci. USA 101, 12422–12427 (2004).ADS 
    CAS 
    Article 

    Google Scholar 
    24.Klinedinst, P. L., Wilhite, D. A., Hahn, L. G. & Hubbard, K. G. The potential effects of climate change on summer seasonal dairy cattle milk production and reproduction. Clim. Chang. 23, 21–36 (1993).ADS 
    Article 

    Google Scholar 
    25.Mauger, G., Bauman, Y., Nennich, T. & Salathé, E. Impacts of climate change on milk production in the United States. Prof. Geogr. 67, 121–131 (2015).Article 

    Google Scholar 
    26.Key, N. & Sneeringer, S. Potential effects of climate change on the productivity of U.S. dairies. Am. J. Agric. Econ. 96, 1136–1156 (2014).Article 

    Google Scholar 
    27.Ortiz-Bobea, A., Knippenberg, E. & Chambers, R. G. Growing climatic sensitivity of U.S. agriculture linked to technological change and regional specialization. Sci. Adv. 4, eaat4343 (2018).ADS 
    Article 

    Google Scholar 
    28.Butler, E. E., Mueller, N. D. & Huybers, P. Peculiarly pleasant weather for US maize. Proc. Natl Acad. Sci. USA 115, 11935–11940 (2018).CAS 
    Article 

    Google Scholar 
    29.Lobell, D. B., Schlenker, W. & Costa-Roberts, J. Climate trends and global crop production since 1980. Science 333, 616–620 (2011).ADS 
    CAS 
    Article 

    Google Scholar 
    30.Tigchelaar, M., Battisti, D. S., Naylor, R. L. & Ray, D. K. Future warming increases probability of globally synchronized maize production shocks. Proc. Natl Acad. Sci. U. S. A. 115, 6644–6649 (2018).ADS 
    Article 

    Google Scholar 
    31.PRISM Climate Data (Oregon State Univ., 2019); http://www.prism.oregonstate.edu/32.Daly, C. et al. Physiographically sensitive mapping of climatological temperature and precipitation across the conterminous United States. Int. J. Climatol. https://doi.org/10.1002/joc.1688 (2008).33.National Research Council. Nutrient Requirements of Dairy Cattle, Seventh Revised Edition (National Academies Press, 2001).34.Auldist, M. J., Walsh, B. J. & Thomson, N. A. Seasonal and lactational influences on bovine milk composition in New Zealand. J. Dairy Res. 65, 401–411 (1998).CAS 
    Article 

    Google Scholar 
    35.Lobell, D. B. Climate change adaptation in crop production: beware of illusions. Glob. Food Sec. 3, 72–76 (2014).Article 

    Google Scholar 
    36.Mukherjee, D., Bravo-Ureta, B. E. & De Vries, A. Dairy productivity and climatic conditions: econometric evidence from South-eastern United States. Aust. J. Agric. Resour. Econ. 57, 123–140 (2013).Article 

    Google Scholar 
    37.Milk Cost of Production Estimates: Cost-of-Production Estimates-2016 Base (USDA ERS, 2021); https://www.ers.usda.gov/data-products/milk-cost-of-production-estimates/milk-cost-of-production-estimates/#Milk38.Liang, X. Z. et al. Determining climate effects on US total agricultural productivity. Proc. Natl Acad. Sci. USA 114, E2285–E2292 (2017).CAS 
    Article 

    Google Scholar 
    39.Malikov, E., Miao, R. & Zhang, J. Distributional and temporal heterogeneity in the climate change effects on U.S. agriculture. J. Environ. Econ. Manage. 104, 102386 (2020).Article 

    Google Scholar 
    40.MacDonald, J. M., Law, J. & Mosheim, R. Consolidation in U.S. Dairy Farming Economic Research Report No. 274 (ERS, USDA, 2020); https://www.ers.usda.gov/publications/pub-details/?pubid=9890041.Hemme, T. & Otte, J. Pro-Poor Livestock Policy Initiative Status and Prospects for Smallholder Milk Production a Global Perspective (Food and Agriculture Organization of the United Nations, 2010).42.Osei-Amponsah, R. et al. Heat stress impacts on lactating cows grazing Australian summer pastures on an automatic robotic dairy. Animals 10, 869 (2020).Article 

    Google Scholar 
    43.Chang-Fung-Martel, J., Harrison, M. T., Rawnsley, R., Smith, A. P. & Meinke, H. The impact of extreme climatic events on pasture-based dairy systems: a review. Crop Pasture Sci 68, 1158 (2017).Article 

    Google Scholar 
    44.Livestock Hot Weather Stress. Operations Manual (NOAA, 1976); https://scirp.org/reference/referencespapers.aspx?referenceid=191321645.Pinheiro J., Bates D., Debroy S. S. D. Linear and nonlinear mixed effects models, R package nlme version 3.1-152 (2021).46.Conley, T. G. GMM estimation with cross sectional dependence. J. Econom. 92, 1–45 (1999).MathSciNet 
    Article 

    Google Scholar 
    47.Borchers, H. W. pracma: practical numerical math functions, version 2.2.9.1–393 (2019).48.Colin Cameron, A., Gelbach, J. B. & Miller, D. L. Robust inference with multiway clustering. J. Bus. Econ. Stat. 29, 238–249 (2011).MathSciNet 
    Article 

    Google Scholar 
    49.Zeileis, A., Köll, S. & Graham, N. Various versatile variances: an object-oriented implementation of clustered covariances in R. J. Stat. Softw. https://doi.org/10.18637/jss.v095.i01 (2020). More

  • in

    Natural infrastructure in sustaining global urban freshwater ecosystem services

    1.Gartner, T., Mulligan, J., Schmidt, R. & Gunn, J. Natural Infrastructure (World Resources Institute, 2013).2.McDonald, R. I. et al. Water on an urban planet: urbanization and the reach of urban water infrastructure. Glob. Environ. Change 27, 96–105 (2014).Article 

    Google Scholar 
    3.Vorosmarty, C. J. et al. Global threats to human water security and river biodiversity. Nature 467, 555–561 (2010).CAS 
    Article 

    Google Scholar 
    4.Grill, G. et al. Mapping the world’s free-flowing rivers. Nature 569, 215–221 (2019).CAS 
    Article 

    Google Scholar 
    5.Tessler, Z. D. et al. Profiling risk and sustainability in coastal deltas of the world. Science 349, 638–643 (2015).CAS 
    Article 

    Google Scholar 
    6.Palmer, M. A. Water resources: beyond infrastructure. Nature 467, 534–535 (2010).CAS 
    Article 

    Google Scholar 
    7.Michalak, A. M. Study role of climate change in extreme threats to water quality. Nature 535, 349–350 (2016).CAS 
    Article 

    Google Scholar 
    8.McDonald, R. I., Weber, K. F., Padowski, J., Boucher, T. & Shemie, D. Estimating watershed degradation over the last century and its impact on water-treatment costs for the world’s large cities. Proc. Natl Acad. Sci. USA 113, 9117–9122 (2016).CAS 
    Article 

    Google Scholar 
    9.Romulo, C. L. et al. Global state and potential scope of investments in watershed services for large cities. Nat. Commun. 9, 4375 (2018).Article 
    CAS 

    Google Scholar 
    10.Tellman, B. et al. Opportunities for natural infrastructure to improve urban water security in Latin America. PLoS ONE 13, e0209470 (2018).Article 

    Google Scholar 
    11.United Nations World Water Assessment Programme/UN-Water The United Nations World Water Development Report 2018: Nature-Based Solutions for Water (UNESCO, 2018).12.Palmer, M. A., Liu, J., Matthews, J. H., Mumba, M. & D’Odorico, P. Manage water in a green way. Science 349, 584–585 (2015).CAS 
    Article 

    Google Scholar 
    13.Ziv, G., Baran, E., Nam, S., Rodríguez-Iturbe, I. & Levin, S. A. Trading-off fish biodiversity, food security, and hydropower in the Mekong River Basin. Proc. Natl Acad. Sci. USA 109, 5609–5614 (2012).CAS 
    Article 

    Google Scholar 
    14.Harrison, I. J. et al. Protected areas and freshwater provisioning: a global assessment of freshwater provision, threats and management strategies to support human water security. Aquat. Conserv. Mar. Freshw. Ecosyst. 26, 103–120 (2016).Article 

    Google Scholar 
    15.The World Database on Protected Areas (IUCN and UNEP-WCMC, 2017); http://www.protectedplanet.net16.Huber-Stearns, H. R., Goldstein, J. H., Cheng, A. S. & Toombs, T. P. Institutional analysis of payments for watershed services in the western United States. Ecosyst. Serv. 16, 83–93 (2015).Article 

    Google Scholar 
    17.Moran, E. F., Lopez, M. C., Moore, N., Müller, N. & Hyndman, D. W. Sustainable hydropower in the 21st century. Proc. Natl Acad. Sci. USA 115, 11891–11898 (2018).CAS 
    Article 

    Google Scholar 
    18.Zheng, H. et al. Benefits, costs, and livelihood implications of a regional payment for ecosystem service program. Proc. Natl Acad. Sci. USA 110, 16681–16686 (2013).CAS 
    Article 

    Google Scholar 
    19.Adamowicz, W. et al. Assessing ecological infrastructure investments. Proc. Natl Acad. Sci. USA 116, 201802883 (2019).Article 
    CAS 

    Google Scholar 
    20.McDonald R. I. Conservation for Cities: How to Plan & Build Natural Infrastructure (Island Press, 2015).21.Grill, G. et al. An index-based framework for assessing patterns and trends in river fragmentation and flow regulation by global dams at multiple scales. Environ. Res. Lett. 10, 015001 (2015).Article 

    Google Scholar 
    22.Poff, N. L. & Schmidt, J. C. How dams can go with the flow. Science 353, 1099–1100 (2016).CAS 
    Article 

    Google Scholar 
    23.Liu, J. & Yang, W. Integrated assessments of payments for ecosystem services programs. Proc. Natl Acad. Sci. USA 110, 16297–16298 (2013).CAS 
    Article 

    Google Scholar 
    24.Muller, M., Biswas, A., Martin-Hurtado, R. & Tortajada, C. Built infrastructure is essential. Science 349, 585–586 (2015).CAS 
    Article 

    Google Scholar 
    25.Veldkamp, T. I. E. et al. Water scarcity hotspots travel downstream due to human interventions in the 20th and 21st century. Nat. Commun. 8, 15697 (2017).CAS 
    Article 

    Google Scholar 
    26.Cohen, S., Kettner, A. J. & Syvitski, J. P. M. Global suspended sediment and water discharge dynamics between 1960 and 2010: continental trends and intra-basin sensitivity. Glob. Planet. Change 115, 44–58 (2014).Article 

    Google Scholar 
    27.Dottori, F. et al. Development and evaluation of a framework for global flood hazard mapping. Adv. Water Resour. 94, 87–102 (2016).Article 

    Google Scholar 
    28.Byers L. et al. A Global Database of Power Plants (World Resources Institute, 2018); https://www.wri.org/publication/global-power-plant-database29.Liu, J. Integration across a metacoupled world. Ecol. Soc. 22, 29 (2017).Article 

    Google Scholar 
    30.Vercruysse, K., Grabowski, R. C. & Rickson, R. J. Suspended sediment transport dynamics in rivers: multi-scale drivers of temporal variation. Earth Sci. Rev. 166, 38–52 (2017).Article 

    Google Scholar 
    31.Wu, X.-X., Gu, Z.-J., Luo, H., Shi, X.-Z. & Yu, D.-S. Analyzing forest effects on runoff and sediment production using leaf area index. J. Mt. Sci. 11, 119–130 (2014).Article 

    Google Scholar 
    32.Wang, Y. et al. Annual runoff and evapotranspiration of forestlands and non-forestlands in selected basins of the Loess Plateau of China. Ecohydrology 4, 277–287 (2011).CAS 
    Article 

    Google Scholar 
    33.Bilotta, G. S. & Brazier, R. E. Understanding the influence of suspended solids on water quality and aquatic biota. Water Res. 42, 2849–2861 (2008).CAS 
    Article 

    Google Scholar 
    34.Stickler, C. M. et al. Dependence of hydropower energy generation on forests in the Amazon Basin at local and regional scales. Proc. Natl Acad. Sci. USA 110, 9601–9606 (2013).CAS 
    Article 

    Google Scholar 
    35.Maltby, E. & Acreman, M. C. Ecosystem services of wetlands: pathfinder for a new paradigm. Hydrol. Sci. J. 56, 1341–1359 (2011).Article 

    Google Scholar 
    36.Shuster, W. D., Bonta, J., Thurston, H., Warnemuende, E. & Smith, D. R. Impacts of impervious surface on watershed hydrology: a review. Urban Water J. 2, 263–275 (2005).Article 

    Google Scholar 
    37.Borrelli, P. et al. Land use and climate change impacts on global soil erosion by water (2015–2070). Proc. Natl Acad. Sci. USA 117, 21994–22001 (2020).CAS 
    Article 

    Google Scholar 
    38.Blöschl, G. et al. Changing climate both increases and decreases European river floods. Nature 573, 108–111 (2019).Article 
    CAS 

    Google Scholar 
    39.Symes, W. S., Rao, M., Mascia, M. B. & Carrasco, L. R. Why do we lose protected areas? Factors influencing protected area downgrading, downsizing and degazettement in the tropics and subtropics. Glob. Change Biol. 22, 656–665 (2016).Article 

    Google Scholar 
    40.Kremen, C. & Merenlender, A. M. Landscapes that work for biodiversity and people. Science 362, eaau6020 (2018).Article 
    CAS 

    Google Scholar 
    41.Dinerstein, E. et al. A global deal for nature: guiding principles, milestones, and targets. Sci. Adv. 5, eaaw2869 (2019).CAS 
    Article 

    Google Scholar 
    42.Liu, J. et al. China’s environment on a metacoupled planet. Annu. Rev. Environ. Resour. 43, 1–34 (2018).CAS 
    Article 

    Google Scholar 
    43.Viña, A., McConnell, W. J., Yang, H., Xu, Z. & Liu, J. Effects of conservation policy on China’s forest recovery. Sci. Adv. 2, e1500965 (2016).Article 

    Google Scholar 
    44.Chen, C. et al. China and India lead in greening of the world through land-use management. Nat. Sustain. 2, 122–129 (2019).Article 

    Google Scholar 
    45.Ouyang, Z. et al. Improvements in ecosystem services from investments in natural capital. Science 352, 1455–1459 (2016).CAS 
    Article 

    Google Scholar 
    46.Vörösmarty, C. J. et al. Ecosystem-based water security and the Sustainable Development Goals (SDGs). Ecohydrol. Hydrobiol. 18, 317–333 (2018).Article 

    Google Scholar 
    47.Liu, J. et al. Nexus approaches to global sustainable development. Nat. Sustain. 1, 466–476 (2018).Article 

    Google Scholar 
    48.Flörke, M., Schneider, C. & McDonald, R. I. Water competition between cities and agriculture driven by climate change and urban growth. Nat. Sustain. 1, 51–58 (2018).Article 

    Google Scholar 
    49.McDonald, R. I. et al. Urban growth, climate change, and freshwater availability. Proc. Natl Acad. Sci. USA 108, 6312–6317 (2011).CAS 
    Article 

    Google Scholar 
    50.Willner, S. N., Otto, C. & Levermann, A. Global economic response to river floods. Nat. Clim. Change 8, 594–598 (2018).Article 

    Google Scholar 
    51.Cattaneo, A., Nelson, A. & McMenomy, T. Global mapping of urban–rural catchment areas reveals unequal access to services. Proc. Natl Acad. Sci. USA 118, e2011990118 (2021).CAS 
    Article 

    Google Scholar 
    52.Zarfl, C., Lumsdon, A. E., Berlekamp, J., Tydecks, L. & Tockner, K. A global boom in hydropower dam construction. Aquat. Sci. 77, 161–170 (2015).Article 

    Google Scholar 
    53.Schneider, A., Friedl, M. A. & Potere, D. A new map of global urban extent from MODIS satellite data. Environ. Res. Lett. 4, 044003 (2009).Article 

    Google Scholar 
    54.Lehner, B., Verdin, K. & Jarvis, A. New global hydrography derived from spaceborne elevation data. EOS 89, 93–94 (2008).55.Yang, H. et al. A global assessment of the impact of individual protected areas on preventing forest loss. Sci. Total Environ. 777, 145995 (2021).CAS 
    Article 

    Google Scholar 
    56.Smith, A. et al. New estimates of flood exposure in developing countries using high-resolution population data. Nat. Commun. 10, 1814 (2019).Article 
    CAS 

    Google Scholar 
    57.Best, J. Anthropogenic stresses on the world’s big rivers. Nat. Geosci. 12, 7–21 (2019).CAS 
    Article 

    Google Scholar 
    58.Hanasaki, N. et al. An integrated model for the assessment of global water resources—Part 1: model description and input meteorological forcing. Hydrol. Earth Syst. Sci. 12, 1007–1025 (2008).Article 

    Google Scholar 
    59.Bondeau, A. et al. Modelling the role of agriculture for the 20th century global terrestrial carbon balance. Glob. Change Biol. 13, 679–706 (2007).Article 

    Google Scholar 
    60.Pokhrel, Y. N. et al. Incorporation of groundwater pumping in a global Land Surface Model with the representation of human impacts. Water Resour. Res. 51, 78–96 (2015).Article 

    Google Scholar 
    61.Wada, Y., Wisser, D. & Bierkens, M. F. P. Global modeling of withdrawal, allocation and consumptive use of surface water and groundwater resources. Earth Syst. Dyn. 5, 15–40 (2014).Article 

    Google Scholar 
    62.Müller Schmied, H. et al. Variations of global and continental water balance components as impacted by climate forcing uncertainty and human water use. Hydrol. Earth Syst. Sci. 20, 2877–2898 (2016).Article 

    Google Scholar 
    63.Sheffield, J., Goteti, G. & Wood, E. F. Development of a 50-year high-resolution global dataset of meteorological forcings for land surface modeling. J. Clim. 19, 3088–3111 (2006).Article 

    Google Scholar 
    64.Dirmeyer, P. A. et al. GSWP-2: multimodel analysis and implications for our perception of the land surface. Bull. Am. Meteorol. Soc. 87, 1381–1398 (2006).Article 

    Google Scholar 
    65.Weedon, G. P. et al. The WFDEI meteorological forcing data set: WATCH forcing data methodology applied to ERA-Interim reanalysis data. Water Resour. Res. 50, 7505–7514 (2014).Article 

    Google Scholar 
    66.Bingham, H. C. et al. Sixty years of tracking conservation progress using the World Database on Protected Areas. Nat. Ecol. Evol. 3, 737–743 (2019).Article 

    Google Scholar 
    67.ArcGIS Desktop: Release 10.3.1 (Environmental Systems Research Institution, 2015).68.Domisch, S., Amatulli, G. & Jetz, W. Near-global freshwater-specific environmental variables for biodiversity analyses in 1 km resolution. Sci. Data 2, 150073 (2015).CAS 
    Article 

    Google Scholar 
    69.Bennett, G. & Ruef, F. Alliances for Green Infrastructure: State of Watershed Investment 2016 (Forest Trends, 2016).70.R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, 2017).71.Wellman, B. & Frank, K. in Social Capital: Theory and Research (eds Lin, N. et al.) 233–273 (Routledge, 2001).72.Bates, D., Machler, M., Bolker, B. M. & Walker, S. C. Fitting linear mixed-effects models using lme4. J. Stat. Softw. 67, 1–48 (2015).Article 

    Google Scholar  More

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    Congo Basin rainforest — invest US$150 million in science

    COMMENT
    20 October 2021

    Congo Basin rainforest — invest US$150 million in science

    The world’s second-largest rainforest is key to limiting climate change — it needs urgent study and protection.

    Lee J. T. White

    0
    ,

    Eve Bazaiba Masudi

    1
    ,

    Jules Doret Ndongo

    2
    ,

    Rosalie Matondo

    3
    ,

    Arlette Soudan-Nonault

    4
    ,

    Alfred Ngomanda

    5
    ,

    Ifo Suspense Averti

    6
    ,

    Corneille E. N. Ewango

    7
    ,

    Bonaventure Sonké

    8
    &

    Simon L. Lewis

    9

    Lee J. T. White

    Lee J. T. White is Minister of Water, Forests, Oceans, Environment, Climate Change and Land-use Planning, Gabonese Republic.

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    Eve Bazaiba Masudi

    Eve Bazaiba Masudi is Deputy Prime Minister and Minister of Environment and Sustainable Development, Democratic Republic of the Congo.

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    Jules Doret Ndongo

    Jules Doret Ndongo is Minister of Forestry and Wildlife, Republic of Cameroon.

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    Rosalie Matondo

    Rosalie Matondo is Minister of Forest Economy, Republic of the Congo.

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    Arlette Soudan-Nonault

    Arlette Soudan-Nonault is Minister of Environment, Sustainable Development and the Congo Basin, Republic of the Congo.

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    Alfred Ngomanda

    Alfred Ngomanda is director of the National Centre for Scientific Research and Technology (CENAREST), Gabonese Republic.

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    Ifo Suspense Averti

    Ifo Suspense Averti is an associate professor in tropical forest ecology at Marian Ngouabi University, Republic of the Congo.

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    Corneille E. N. Ewango

    Corneille E. N. Ewango is a professor of tropical forest ecology and management at the University of Kisangani, Democratic Republic of the Congo.

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    Bonaventure Sonké

    Bonaventure Sonké is a professor of plant systematics and ecology at the University of Yaounde I, Republic of Cameroon.

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    Simon L. Lewis

    Simon L. Lewis is professor of global change science at University College London and the University of Leeds, UK.

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    A warden with an orphaned mountain gorilla in the Virunga National Park sanctuary in the Democratic Republic of the Congo.Credit: Phil Moore/AFP/Getty

    Earth’s second-largest expanse of tropical forest lies in central Africa, in the Congo Basin. The region supports the livelihoods of 80 million people. The rainfall that the forest generates as far away as the Sahel and the Ethiopian highlands supports a further 300 million rural Africans. These forests are crucial to regulating Earth’s climate, and are home to forest elephants, gorillas and humans’ closest relatives, chimpanzees and bonobos.Such services to people and the planet are not guaranteed, given rapid climate change and ongoing development in the region. The forest’s ability to absorb carbon dioxide is slowing as temperatures rise1. Deforestation, although lower than elsewhere in the tropics over recent decades, has led to the loss of more than 500,000 hectares of forest in 2019 alone (see go.nature.com/3dnxm9e). Without new policies, this is expected to increase.Yet, too often, central Africa’s rainforests are ignored or downplayed. The Congo Basin forests receive much less academic and public attention than do those in the Amazon and southeast Asia. Between 2008 and 2017, the Congo Basin received just 11.5% of international financial flows for forest protection and sustainable management in tropical areas, compared with 55% for southeast Asia and 34% for the Amazon region2.The area is neglected even by comparison with the rest of Africa. For example, a key UK-funded programme of climate research, called Future Climate for Africa, invested £20 million (US$27 million) in modelling and four projects focused on eastern, western and southern Africa. None focused on the Congo Basin or central Africa.The result of this neglect is clear in high-level climate assessments. Central Africa was one of only two regions worldwide without enough data for the Intergovernmental Panel on Climate Change to assess past trends in extreme heat in its 2021 Working Group I report (the other was the southern tip of South America).
    A collaborative look at the Congo Basin
    We are a group of ministers who have responsibility for forests in the region, and scientists who work on the ground and advise governments. Together we call for a Congo Basin Climate Science Initiative. This should comprise a $100-million, decade-long programme of research, tied to a separate $50-million fund to train Congo Basin nationals to become PhD-level scientists. Such funding would transform our understanding of these majestic forests, providing crucial input for policymakers to help them enact policies to avoid the region’s looming environmental crises.There is precedent for such a transformation. In the mid-1990s, rainforest science in the Amazon region was limited and was largely conducted by overseas scientists. Formally beginning in 1998 and led by Brazilians, the Large-Scale Biosphere-Atmosphere Experiment in Amazonia programme, known as the LBA, was a 10-year, $100-million effort. It revolutionized understanding of the Amazon rainforest and its role in the Earth system.The LBA involved 6 years of intensive measurements and covered climatology, hydrology, ecology and biogeochemistry across an area of 550 million hectares. It comprised 120 projects and 1,700 participants, 990 of whom were Brazilians3. One of its greatest legacies was the creation of a new cadre of Brazilian researchers. Two decades on, Brazil is now widely acknowledged as the world’s leading nation for tropical forest monitoring, and is at the forefront of rainforest science.We should — we must — do the same for central Africa.Known unknownsThe Greater Congo Basin covers some 240 million hectares of contiguous forests, straddling 8 nations (see ‘Earth’s second green lung’). Merely sampling this vast area is daunting. Access often requires days of travel in dugout canoes and long treks through the humid jungle, punctuated by wading through swamps. There is also a pervasive prejudice: too many people think working in the Congo Basin region is perilous, whether the hazards are political instability, unfamiliar diseases or dangerous animals. In reality, for the vast majority of central Africa, the risks are similar to working in the Amazon rainforest or east African savannah ecosystems.

    Source: Ref. 1

    These various challenges can be surmounted. Papers from the past few years, co-authored by many of us, highlight how important and understudied the region is. In 2017, the world’s largest tropical peatland complex was mapped for the first time — an area spanning 14.6 million hectares in the heart of the Congo basin4. This work radically shifted our understanding of carbon stores in the region. In March 2020, an international consortium showed that Africa’s rainforests annually absorb the same amount of carbon1 as was emitted each year by fossil-fuel use across the entire African continent in the 2010s5.In December 2020, a striking 81% decline in fruit production over 3 decades in an area of forest in Gabon was shown to coincide with climate warming and an 11% decline in the body condition of forest elephants (they rely on fruit for part of their diet)6. And in April, the first region-wide assessment of tree community composition in central Africa was published7, mapping areas that are vulnerable to climate change and human pressures.
    Biodiversity needs every tool in the box: use OECMs
    Overall, the strikingly recent (although somewhat limited) data suggest that the tropical forests of the Congo Basin are more carbon-dense8, more efficient at slowing climate change1 and more resistant to our changing climate9 than are Amazon tropical forests. But we do not know how increasing droughts, higher temperatures, selective logging and deforestation might interact — including the possibility of reduced rainfall in the Sahel10 and Ethiopian highlands11. Some 2,500 years ago, vast swathes of the Congo Basin forests were lost during a period of climate stress, but researchers do not understand the historic context of that event, nor the likelihood of a repeat12.Little is known about the region because not enough science is done in central Africa. Remarkably, researchers still do not understand the basic principles of why different types of forest occur where they do in the Congo Basin. Climate models for this region are poor, both because of the complex interplay of Atlantic, Indian and Southern ocean influences and because of a lack of local climate data. Without more data and more specialists, it is impossible to make reliable predictions of these forests’ responses to changes in climate and land use.Next stepsInvestment in basic science is urgently needed to fill these gaps. A Congo Basin Climate Science Initiative should focus on three important overarching questions: how does the Congo Basin currently operate as an integrated system? How will changes in land use and climate affect its function? And how sustainable are different options for development?Within these broad topics are more specific questions that politicians will need answers to if nations are to achieve net-zero CO2 emissions by 2050. One such question is how much carbon is stored in vegetation and soils. These and other quantities must be reported as part of countries’ commitments to the 2015 Paris climate agreement. At present, most central African countries rely on default values, which could be way off the mark. A recent paper13 on African montane forests largely near the edges of the basin, for example, showed that measured carbon storage values were 67% higher than the default values.

    A child on the Mongala River in the dense forest of the Democratic Republic of the Congo.Credit: Pascal Maitre/Panos

    A science initiative will work only if there is enthusiasm and leadership from researchers and active support from key Congo Basin countries, alongside buy-in from funders. We envision three steps to achieve these aims.First, scientists from the Congo region should hold a workshop with the LBA architects and participants to assess lessons from the Amazon region. This south–south cooperation would build a scientist-led framework to address the crucial research questions.Second, a meeting of politicians and advisers from the region would facilitate discussions of the policy-relevant questions that scientists should investigate. This would be led by Cameroon, the Democratic Republic of the Congo, Gabon and the Republic of the Congo — the four nations conducting the most research in the region. The meeting will help to lock in political support across ministries responsible for forests, environment, water, climate, science and universities.
    Nature-based solutions can help cool the planet — if we act now
    Third, partners will need to develop an overarching science programme that is acceptable to funders. Such a programme will probably include scaling up many efforts that are already under way, but which are currently insufficient in scope or unreliably funded. This would speed up scientific progress.For example, a handful of established, long-term field sites already exist in the Greater Congo Basin, including in Lopé National Park in Gabon and in the Yangambi Biosphere Reserve in the Democratic Republic of the Congo. These ‘supersites’ are sophisticated field stations with full-time staff who collect reliable, long-term data sets on vegetation, animals and the physical environment, including greenhouse-gas fluxes at Yangambi. But the sites are too few in number, and they rely on the heroic efforts of local champions. There should be a dozen or so locations across the region, with consistent funding to support complex research projects.Similarly, the African Tropical Rainforest Observation Network (AfriTRON), established in 2009, tracks every tree in permanent sample plots to estimate the carbon balance of undisturbed forests. Although this observatory has ramped up from its original 40 sites in central Africa to more than 200 today, these cover just 250 hectares of the roughly 240-million-hectare total. That is very sparse sampling from which to draw regional conclusions.Meanwhile, the Forest Global Earth Observatory (ForestGEO), established in 1990 to understand how tropical forests maintain such a diverse number of tree species, has established just 4 sites in central Africa in 30 years, with none in the centre of the basin. There is an obvious need for expansion.

    African forest elephants in Ivindo National Park, Gabon.Credit: Amaury Hauchard/AFP/Getty

    Finally, the 2016 AfriSAR airborne field campaign, a collaboration between NASA, the European Space Agency and the Gabonese Agency for Space Studies and Observation, showed how to combine different data sets to carefully map forest types and their carbon stocks in Lopé National Park in Gabon. This model could be replicated elsewhere in the basin.All of this work will require linking theory, observations, experiments and modelling. It should attract a diversity of leading international experts to focus on Africa and provide training to Congo Basin nationals. A $100-million research programme would provide new opportunities and much-needed career options for African scientists. The tied investment of $50 million, focused on building talent, could produce approximately 200 PhDs awarded by leading universities worldwide. This would create a new generation of scientists, including future leaders, from central Africa. The training programme would ensure the necessary step-change in science capacity, and provide opportunities for young African researchers who currently find it hard to compete for international scholarships, which are often won by students from Asia or South America.Agreeing on open access for all the data collected, as in the LBA programme, will significantly boost the initiative’s science impact.Money well spentThis $150-million science programme over 10 years needs investors. One option would be to combine funds from governments that have made large forest- and science-related investments in the Congo Basin in the past, notably Belgium, France, Germany, Norway, the United Kingdom, the United States and the European Union. Alternatives include United Nations agencies, international climate funds and private philanthropy organizations. Such a programme should be high on funders’ agendas, given the UN Sustainable Development Goals (SDGs). These include raising capacity for effective climate-change-related planning and management (SDG13), increasing financial resources to conserve and sustainably use biodiversity and ecosystems (SDG15), boosting the number of researchers in lower-income countries, and increasing research and development (R&D) funding (SDG9), all before 2030.Global R&D funding was $2.2 trillion in 201914. Thus, investing $150 million over a decade to better understand and protect the world’s second-largest extent of tropical forest is modest. To put this sum in context, the US government’s total projected cost for the Human Genome Project was $2.7 billion, and the European Space Agency spends approximately $500 million on its larger, long-lasting scientific satellites. The $100 million that the LBA brought to the Amazon in the 1990s is equivalent to about $160 million in today’s terms.
    Ethiopia, Somalia and Kenya face devastating drought
    The investment in science will pay for itself many times over. Consider just the role of forests as reservoirs of zoonotic diseases. Better forest management lowers the risk of disease outbreaks, let alone a pandemic15.Critics might argue that direct interventions in development aid are more urgent than investing in climate and ecological science. However, these funds are usually independent and do not compete. Furthermore, the old division between ending poverty and protecting the environment no longer applies: Africans will suffer disproportionately if temperatures are not limited as per the Paris agreement. That must include protection of the forests of the Congo Basin.Further efforts could help to support the goals of the Congo Basin science programme. For example, there is a lack of economic models that show how standing forests can become more valuable than converted landscapes. Developing these would support policy decisions to maintain forest cover.There are also several efforts under way to improve forest management that aim to empower local people, increase income and protect the environment. These include the transfer of land-management decisions to local populations, such as through community forestry, and creating high-value end products from selective logging rather than relying on the export of raw, unprocessed timber. A new science initiative could assess various approaches to understand what works best.We know so little about the majestic forests of central Africa. A Congo Basin Climate Science Initiative would curb our collective ignorance. A lack of investment is the barrier to safeguarding these precious ecosystems. Surmount this, and the future of Earth’s second ‘great green lung’ will be brighter.

    Nature 598, 411-414 (2021)
    doi: https://doi.org/10.1038/d41586-021-02818-7

    References1.Hubau, W. et al. Nature 579, 80–87 (2020).PubMed 
    Article 

    Google Scholar 
    2.Atyi, R. E. et al. International Financial Flows to Support Nature Protection and Sustainable Forest Management in Central Africa (Central Africa Forest Observatory, 2019).
    Google Scholar 
    3.Lahsen, M. & Nobre, C. A. Environ. Sci. Policy 10, 62–74 (2007).Article 

    Google Scholar 
    4.Dargie, G. C. et al. Nature 542, 86–90 (2017).PubMed 
    Article 

    Google Scholar 
    5.Ayompe, L. M., Davis, S. J. & Egoh, B. N. Environ. Res. Lett. 15, 124039 (2020).Article 

    Google Scholar 
    6.Bush, E. R. et al. Science 370, 1219–1222 (2020).PubMed 
    Article 

    Google Scholar 
    7.Réjou-Méchain, M. et al. Nature 593, 90–94 (2021).PubMed 
    Article 

    Google Scholar 
    8.Lewis, S. L. et al. Phil. Trans. R. Soc. B 368, 20120295 (2013).PubMed 
    Article 

    Google Scholar 
    9.Bennett, A. C. et al. Proc. Natl Acad. Sci. USA 118, e2003169118 (2021).PubMed 
    Article 

    Google Scholar 
    10.Salih, A. A. M., Zhang, Q. & Tjernström, M. J. Geophys. Res. Atmospheres 120, 6793–6808 (2015).Article 

    Google Scholar 
    11.Gebrehiwot, S. G. et al. WIREs Water 6, e1317 (2019).Article 

    Google Scholar 
    12.Malhi, Y. Proc. Natl Acad. Sci. USA 115, 3202–3204 (2018).PubMed 
    Article 

    Google Scholar 
    13.Cuni-Zanchez, A. et al. Nature 596, 536–542 (2021).PubMed 
    Article 

    Google Scholar 
    14.Sargent, J. F. Global Research and Development Expenditures: Fact Sheet R44283 (Congressional Research Service, 2021).15.Everard, M., Johnston, P., Santillo, D. & Staddon, C. Environ. Sci. Policy 111, 7–17 (2020).PubMed 
    Article 

    Google Scholar 
    Download references

    Competing Interests
    L.J.T.W. (Gabon), E.B.M. (Democratic Republic of the Congo), J.D.N. (Cameroon), R.M. (Republic of the Congo) and A.S-N. (Republic of the Congo) are ministers of forests and/or the environment. Their countries stand to benefit if international donors take on board the recommendations in this Comment article.

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    University of Vermont (UVM)
    Plattsburgh, NY, United States

    Postdoctoral Fellowship in Vascular Biology at Boston Children’s Hospital and Harvard Medical School

    Boston Children’s Hospital (BCH)
    Boston, MA, United States

    Assistant Professor/Associate Professor of Physiology and Cellular Biophysics (Tenure-Track)

    Columbia University in the City of New York (CU)
    New York, United States

    Associate or Senior Editor, Nature Biomedical Engineering

    Springer Nature
    New York, NY, United States More