Subterms
1. World Bank, World Development Report 2008: Agriculture for Development (World Bank, Washington, DC (2008). 2. Royal Society of London, Reaping the Benefits: Science and the Sustainable Intensification of Global Agriculture Royal Society, London, (2009). 3. Tilman, D., Balzer, C., Hill, J. & Befort, B. L. Global food demand and the sustainable intensification of agriculture. […] More
All synthetic data was generated using the Microbial Consumer Resource Model previously described9,10 and summarized below. We found the fixed points of the dynamics for each community using the Python package Community Simulator10: https://github.com/Emergent-Behaviors-in-Biology/community-simulator. Principal Coordinate Analysis was performed on the simulated HMP data using the Python package scikit-bio http://scikit-bio.org/. The pairwise distance matrix was […] More
1. Veríssimo, D. et al. Increased conservation marketing effort has major fundraising benefits for even the least popular species. Biol. Conserv. 211, 95–101 (2017). Article Google Scholar 2. Veríssimo, D., MacMillan, D. C. & Smith, R. J. Toward a systematic approach for identifying conservation flagships. Conserv. Lett. 4, 1–8 (2011). Article Google Scholar 3. Smith, […] More
1. Rintoul, S. R. & Naveira Garabato, A. C. in Ocean Circulation and Climate: A 21st Century Perspective Vol. 103 (Siedler, G. et al.) 471–492 (Academic, 2013). 2. Deacon, G. The Hydrology of the Southern Ocean. Discovery Reports (Cambridge Univ. Press, 1937). 3. Orsi, A. H., Whitworth, T. & Nowlin, W. D. On the meridional […] More
1. Grebmeier, J. M., Cooper, L. W., Feder, H. W. & Sirenko, B. I. Ecosystem dynamics of the Pacific-influenced northern Bering and Chukchi seas in the Amerasian Arctic. Prog. Oceanogr. 71, 331–361 (2006). Article Google Scholar 2. Woodgate, R. A. Increases in the pacific inflow to the Arctic from 1990 to 2015, and insights into […] More
Genomic data acquisition DNA samples from 29 Alpine ibex, 4 Iberian ibex, 2 Nubian ibex, 2 Siberian ibex and 1 Markhor individuals were sequenced on an Illumina Hiseq2500 or Hiseq4000 to a depth of 15–38 (median of 17). Supplementary Table 2 specifies individual sampling locations. Libraries were produced using the TruSeq DNA Nano kit. Illumina sequencing […] More
Global occurrences: standard sources vs. citizen science Using exclusively “standard” sources including biodiversity web portals, herbaria, scientific publications, personal observations, and personal communications to search for documented locations would lead to large distributional biases. Indeed, using exclusively standard sources would imply that more than one third of them would be lost. Our results emphasize the […] More
A typical set of mass action equations for the bacterial density B, the density of free phages P, and the nutrient n take the form13,14,23,35: $$begin{array}{l}frac{dn}{dt}=-lambda Bfrac{n}{n+K} frac{dB}{dt}=lambda Bfrac{n}{n+K}-eta BP frac{dP}{dt}=(beta -1)eta BP-delta Pend{array}$$ (1) where the nutrient n is measured in units of bacteria it can be converted to (corresponding to a yield of […] More
