More stories

  • in

    Fluctuating insect diversity, abundance and biomass across agricultural landscapes

    Maxwell, S. L., Fuller, R. A., Brooks, T. M. & Watson, J. E. M. Biodiversity: The ravages of guns, nets and bulldozers. Nature 536, 143–145 (2016).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Uchida, K. & Ushimaru, A. Biodiversity declines due to abandonment and intensification of agricultural lands: Patterns and mechanisms. Ecol. Monogr. 84, 637–658 (2014).
    Google Scholar 
    Habel, J. C. et al. Butterfly community shifts over two centuries: Shifts in butterfly communities. Conserv. Biol. 30, 754–762 (2016).PubMed 

    Google Scholar 
    Seibold, S. et al. Arthropod decline in grasslands and forests is associated with landscape-level drivers. Nature 574, 671–674 (2019).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Hallmann, C. A. et al. More than 75 percent decline over 27 years in total flying insect biomass in protected areas. PLoS One 12, e0185809 (2017).PubMed 
    PubMed Central 

    Google Scholar 
    Wenzel, M., Schmitt, T., Weitzel, M. & Seitz, A. The severe decline of butterflies on western German calcareous grasslands during the last 30 years: A conservation problem. Biol. Cons. 128, 542–552 (2006).
    Google Scholar 
    Biesmeijer, J. C. et al. Parallel declines in pollinators and insect-pollinated plants in Britain and the Netherlands. Science 313, 351–354 (2006).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Hallmann, C. A., Foppen, R. P. B., van Turnhout, C. A. M., de Kroon, H. & Jongejans, E. Declines in insectivorous birds are associated with high neonicotinoid concentrations. Nature 511, 341–343 (2014).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Møller, A. P. Parallel declines in abundance of insects and insectivorous birds in Denmark over 22 years. Ecol. Evol. 9, 6581–6587 (2019).PubMed 
    PubMed Central 

    Google Scholar 
    Wagner, D. L. Insect declines in the anthropocene. Annu. Rev. Entomol. 65, 457–480 (2020).CAS 
    PubMed 

    Google Scholar 
    Habel, J. C., Samways, M. J. & Schmitt, T. Mitigating the precipitous decline of terrestrial European insects: Requirements for a new strategy. Biodivers. Conserv. 28, 1343–1360 (2019).
    Google Scholar 
    Uhl, B., Wölfling, M. & Fiedler, K. Understanding small-scale insect diversity patterns inside two nature reserves: The role of local and landscape factors. Biodivers. Conserv. 29, 2399–2418 (2020).
    Google Scholar 
    Stevens, C. J., Dise, N. B., Mountford, J. O. & Gowing, D. J. Impact of nitrogen deposition on the species richness of grasslands. Science 303, 1876–1879 (2004).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Thomas, J. A. Butterfly communities under threat. Science 353, 216–218 (2016).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Sanders, J. & Hess, J. Benefits of organic farming to environment and society. Thünen Report 65, 362 (2019).
    Google Scholar 
    Brühl, C. A. & Zaller, J. G. Biodiversity decline as a consequence of an inappropriate environmental risk assessment of pesticides. Front. Environ. Sci. 7, 177 (2019).
    Google Scholar 
    Brühl, C. A. et al. Direct pesticide exposure of insects in nature conservation areas in Germany. Sci. Rep. 11, 24144 (2021).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Wagner, D. L., Grames, E. M., Forister, M. L., Berenbaum, M. R. & Stopak, D. Insect decline in the Anthropocene: Death by a thousand cuts. Proc. Natl. Acad. Sci. USA 118, e2023989118 (2021).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Den Boer, P. J. & van Dijk, T. S. Carabid Beetles in A Changing Environment (Agricultural Univ, 1995).
    Google Scholar 
    Cristescu, M. E. From barcoding single individuals to metabarcoding biological communities: Towards an integrative approach to the study of global biodiversity. Trends Ecol. Evol. 29, 566–571 (2014).PubMed 

    Google Scholar 
    Hausmann, A. et al. Toward a standardized quantitative and qualitative insect monitoring scheme. Ecol. Evol. 10, 4009–4020 (2020).PubMed 
    PubMed Central 

    Google Scholar 
    Ratnasingham, S. & Hebert, P. D. N. A DNA-based registry for all animal species: The Barcode Index Number (BIN) system. PLoS One 8, e66213 (2013).ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Hausmann, A. et al. Genetic patterns in european geometrid moths revealed by the Barcode Index Number (BIN) system. PLoS One 8, e84518 (2013).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Padial, J. M., Miralles, A., De la Riva, I. & Vences, M. The integrative future of taxonomy. Front. Zool. 7, 1–14 (2010).
    Google Scholar 
    Schlick-Steiner, B. C. et al. Integrative taxonomy: A multisource approach to exploring biodiversity. Ann. Rev. Entomol. 55, 421–438 (2010).CAS 

    Google Scholar 
    Schlick‐Steiner, B. C., Arthofer, W., & Steiner, F. M. Take up the challenge! Opportunities for evolution research from resolving conflict in integrative taxonomy (2014).Fujita, M. K., Leaché, A. D., Burbrink, F. T., McGuire, J. A. & Moritz, C. Coalescent-based species delimitation in an integrative taxonomy. Trends Ecol. Evol. 27, 480–488 (2012).PubMed 

    Google Scholar 
    Morinière, J. et al. A DNA barcode library for 5,200 German flies and midges (Insecta: Diptera) and its implications for metabarcoding-based biomonitoring. Mol. Ecol. Res. 19, 900–928 (2019).
    Google Scholar 
    Kortmann, M. et al. Arthropod dark taxa provide new insights into diversity responses to bark beetle infestations. Ecol. Appl. 32, e2516 (2022).PubMed 

    Google Scholar 
    Porter, T. M. & Hajibabaei, M. Automated high throughput animal CO1 metabarcode classification. Sci. Rep. 8, 1–10 (2018).
    Google Scholar 
    Boggs, C. L. & Inouye, D. W. A single climate driver has direct and indirect effects on insect population dynamics: Climate drivers of population dynamics. Ecol. Lett. 15, 502–508 (2012).PubMed 

    Google Scholar 
    Conrad, K. F., Fox, R. & Woiwod, I. P. Monitoring biodiversity: Measuring long-term changes in insect abundance. In Insect Conservation Biology (eds Stewart, A. J. A. et al.) 203–225 (CABI, 2007). https://doi.org/10.1079/9781845932541.0203.Chapter 

    Google Scholar 
    Flohre, A. et al. Agricultural intensification and biodiversity partitioning in European landscapes comparing plants, carabids, and birds. Ecol. Appl. Publ. Ecol. Soc. Am. 21, 1772–1781 (2011).
    Google Scholar 
    Emmerson, M. et al. How agricultural intensification affects biodiversity and ecosystem services. In Advances in Ecological Research, vol ***55 43–97 (Elsevier, 2016).
    Google Scholar 
    Segerer, A. H. & Rosenkranz, E. Das grosse Insektensterben: Was es Bedeutet und was Wir Jetzt tun Müssen (Oekom Verlag, 2019).
    Google Scholar 
    Batáry, et al. The former Iron Curtain still drives biodiversity-profit trade-offs in German agriculture. Nat. Ecol. Evol. 1, 1279–1284 (2017).PubMed 

    Google Scholar 
    Kuussaari, M. et al. Extinction debt: A challenge for biodiversity conservation. Trends Ecol. Evol. 24, 564–571 (2009).PubMed 

    Google Scholar 
    Birkhofer, K., Smith, H. G., Weisser, W. W., Wolters, V. & Gossner, M. M. Land-use effects on the functional distinctness of arthropod communities. Ecography 38, 889–900 (2015).
    Google Scholar 
    Tscharntke, T., Klein, A. M., Kruess, A., Steffan-Dewenter, I. & Thies, C. Landscape perspectives on agricultural intensification and biodiversity—ecosystem service management. Ecol. Lett. 8, 857–874 (2005).
    Google Scholar 
    Habel, J. C., Seibold, S., Ulrich, W. & Schmitt, T. Seasonality overrides differences in butterfly species composition between natural and anthropogenic forest habitats. Anim. Conserv. 21, 405–413 (2018).
    Google Scholar 
    Schmitt, T., Ulrich, W., Delic, A., Teucher, M. & Habel, J. C. Seasonality and landscape characteristics impact species community structure and temporal dynamics of East African butterflies. Sci. Rep. 11, 15103 (2021).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Ssymank, A. et al. Praktische Hinweise und Empfehlungen zur Anwendung von Malaisefallen für Insekten in der Biodiversitätserfassung und im Monitoring. Entomol. Verein Krefeld 1, 1–12 (2018).
    Google Scholar 
    Elbrecht, V., Peinert, B. & Leese, F. Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding. Ecol. Evol. 7, 6918–6926 (2017).PubMed 
    PubMed Central 

    Google Scholar 
    Elbrecht, V. & Steinke, D. Scaling up DNA metabarcoding for freshwater macrozoobenthos monitoring. Freshw. Biol. 64, 380–387 (2019).CAS 

    Google Scholar 
    Boetzl, F. A. et al. A multitaxa assessment of the effectiveness of agri-environmental schemes for biodiversity management. Proc. Natl. Acad. Sci. 118, 25 (2021).
    Google Scholar 
    Uhler, J. et al. Relationship of insect biomass and richness with land use along a climate gradient. Nat. Commun. 12, 1–9 (2021).
    Google Scholar 
    Leray, M. et al. A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: Application for characterizing coral reef fish gut contents. Front. Zool. 10, 34 (2013).PubMed 
    PubMed Central 

    Google Scholar 
    Morinière, J. et al. Species identification in malaise trap samples by DNA barcoding based on NGS Technologies and a scoring matrix. PLoS One 11, e0155497 (2016).PubMed 
    PubMed Central 

    Google Scholar 
    Rognes, T., Flouri, T., Nichols, B., Quince, C. & Mahé, F. VSEARCH: A versatile open source tool for metagenomics. PeerJ 4, e2584 (2016).PubMed 
    PubMed Central 

    Google Scholar 
    Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 17, 10 (2011).
    Google Scholar 
    Ondov, B. D., Bergman, N. H. & Phillippy, A. M. Interactive metagenomic visualization in a Web browser. BMC Bioinform. 12, 385 (2011).
    Google Scholar  More

  • in

    Refining the stress gradient hypothesis for mixed species groups of African mammals

    Goodale, E., Beauchamp, G. & Ruxton, G. D. Mixed-Species Groups of Animals: Behavior, Community Structure, and Conservation (Academic Press, 2017).
    Google Scholar 
    Krause, J. & Ruxton, G. D. Living in Groups (Oxford University Press, 2002).
    Google Scholar 
    Stensland, E., Angerbjorn, A. & Berggren, P. Mixed species groups in mammals. Mamm. Rev. 33, 205–223 (2003).
    Google Scholar 
    Anderson, T. M. et al. Landscape-scale analyses suggest both nutrient and antipredator advantages to Serengeti herbivore hotspots. Ecology 91, 1519–1529 (2010).PubMed 

    Google Scholar 
    Sinclair, A. R. E. Does interspecific competition or predation shape the African ungulate community? J. Anim. Ecol. 54, 899–918 (1985).
    Google Scholar 
    Kiffner, C., Kioko, J., Leweri, C. & Krause, S. Seasonal patterns of mixed species groups in large East African mammals. PLoS ONE 9, e113446 (2014).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Meise, K., Franks, D. W. & Bro-Jørgensen, J. Using social network analysis of mixed species groups in African savannah herbivores to assess how community structure responds to environmental change. Philos. Trans. R. Soc. B Biol. Sci. 374, 20190009 (2019).
    Google Scholar 
    de Boer, W. F. & Prins, H. H. T. Large herbivores that thrive mightily but eat and drink as friends. Oecologia 82, 264–274 (1990).ADS 
    PubMed 

    Google Scholar 
    Beaudrot, L., Palmer, M. S., Anderson, T. M. & Packer, C. Mixed-species groups of Serengeti grazers: A test of the stress gradient hypothesis. Ecology. https://doi.org/10.1002/ecy.3163 (2020).Article 
    PubMed 

    Google Scholar 
    He, Q., Bertness, M. D. & Altieri, A. H. Global shifts towards positive species interactions with increasing environmental stress. Ecol. Lett. 16, 695–706 (2013).PubMed 

    Google Scholar 
    Bertness, M. D. & Callaway, R. Positive interactions in communities. Trends Ecol. Evol. 9, 191–193 (1994).CAS 
    PubMed 

    Google Scholar 
    Fugère, V. et al. Testing the stress-gradient hypothesis with aquatic detritivorous invertebrates: Insights for biodiversity-ecosystem functioning research. J. Anim. Ecol. 81, 1259–1267 (2012).PubMed 

    Google Scholar 
    Bakker, E. S., Dobrescu, I., Straile, D. & Holmgren, M. Testing the stress gradient hypothesis in herbivore communities: Facilitation peaks at intermediate nutrient levels. Ecology 94, 1776–1784 (2013).PubMed 

    Google Scholar 
    Hopcraft, J. G. C., Olff, H. & Sinclair, A. R. E. Herbivores, resources and risks: Alternating regulation along primary environmental gradients in savannas. Trends Ecol. Evol. 25, 119–128 (2010).PubMed 

    Google Scholar 
    Sih, A. Optimal behavior: Can foragers balance two conflicting demands? Science 210, 1041–1043 (1980).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Creel, S. & Christianson, D. Relationships between direct predation and risk effects. Trends Ecol. Evol. 23, 194–201 (2008).PubMed 

    Google Scholar 
    Zollner, P. A. & Lima, S. L. Towards a behavioral ecology of ecological landscapes. Trends Ecol. Evol. 11, 131–135 (1996).PubMed 

    Google Scholar 
    Brown, J. S., Laundré, J. W. & Gurung, M. The ecology of fear: Optimal foraging, game theory, and trophic interactions. J. Mammal. 80, 385–399 (1999).
    Google Scholar 
    Gaynor, K. M., Brown, J. S., Middleton, A. D., Power, M. E. & Brashares, J. S. Landscapes of fear: Spatial patterns of risk perception and response. Trends Ecol. Evol. 34, 355–368 (2019).PubMed 

    Google Scholar 
    Creel, S., Schuette, P. & Christianson, D. Effects of predation risk on group size, vigilance, and foraging behavior in an African ungulate community. Behav. Ecol. 25, 773–784 (2014).
    Google Scholar 
    Goodale, E., Beauchamp, G., Magrath, R. D., Nieh, J. C. & Ruxton, G. D. Interspecific information transfer influences animal community structure. Trends Ecol. Evol. 25, 354–361 (2010).PubMed 

    Google Scholar 
    Freeberg, T. M., Eppert, S. K., Sieving, K. E. & Lucas, J. R. Diversity in mixed species groups improves success in a novel feeder test in a wild songbird community. Sci. Rep. 7, 43014 (2017).ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Anderson, T. M. et al. The spatial distribution of african savannah herbivores: Species associations and habitat occupancy in a landscape context. Philos. Trans. R. Soc. B Biol. Sci. 371, 20150314 (2016).
    Google Scholar 
    Arsenault, R. & Owen-Smith, N. Resource partitioning by grass height among grazing ungulates does not follow body size relation. Oikos 117, 1711–1717 (2008).
    Google Scholar 
    Esmaeili, S. et al. Body size and digestive system shape resource selection by ungulates: A cross-taxa test of the forage maturation hypothesis. Ecol. Lett. 24, 2178–2191 (2021).PubMed 

    Google Scholar 
    Hopcraft, J. G. C., Anderson, T. M., Pérez-Vila, S., Mayemba, E. & Olff, H. Body size and the division of niche space: Food and predation differentially shape the distribution of Serengeti grazers. J. Anim. Ecol. 81, 201–213 (2012).PubMed 

    Google Scholar 
    McArthur, C., Banks, P. B., Boonstra, R. & Forbey, J. S. The dilemma of foraging herbivores: Dealing with food and fear. Oecologia 176, 677–689 (2014).ADS 
    PubMed 

    Google Scholar 
    Gagnon, M. & Chew, A. E. Dietary preferences in extant African Bovidae. J. Mammal. 81, 490–511 (2000).
    Google Scholar 
    Kartzinel, T. R. et al. DNA metabarcoding illuminates dietary niche partitioning by African large herbivores. Proc. Natl. Acad. Sci. U.S.A. 112, 8019–8024 (2015).ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Veldhuis, M. P. et al. Cross-boundary human impacts compromise the Serengeti-Mara ecosystem. Science 363, 1424–1428 (2019).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Kavwele, C. M. et al. Non-local effects of human activity on the spatial distribution of migratory wildlife in Serengeti National Park, Tanzania. Ecol. Solut. Evid. 3, e12159 (2022).
    Google Scholar 
    Bijlsma, R. & Loeschcke, V. Environmental stress, adaptation and evolution: An overview. J. Evol. Biol. 18, 744–749 (2005).CAS 
    PubMed 

    Google Scholar 
    Schmitt, M. H., Stears, K. & Shrader, A. M. Zebra reduce predation risk in mixed-species herds by eavesdropping on cues from giraffe. Behav. Ecol. 27, 1073–1077 (2016).
    Google Scholar 
    Preisser, E. L., Orrock, J. L. & Schmitz, O. J. Predator hunting mode and habitat domain alter nonconsmuptive effects in predator-prey interactions. Ecology 88, 2744–2751 (2007).PubMed 

    Google Scholar 
    Kiffner, C. et al. Long-term persistence of wildlife populations in a pastoral area. Ecol. Evol. 10, 10000–10016 (2020).PubMed 
    PubMed Central 

    Google Scholar 
    Hopcraft, J. G. C. et al. Competition, predation, and migration: Individual choice patterns of Serengeti migrants captured by hierarchical models. Ecol. Monogr. 84, 355–372 (2014).
    Google Scholar 
    Fryxell, J. M. Forage quality and aggregation by large herbivores. Am. Nat. 138, 478–498 (1991).
    Google Scholar 
    Fitzgibbon, C. D. Mixed-species grouping in Thomson’s and Grant’s gazelles: The antipredator benefits. Anim. Behav. 39, 1116–1126 (1990).
    Google Scholar 
    Brown, J. S. & Kotler, B. P. Hazardous duty pay and the foraging cost of predation. Ecol. Lett. 7, 999–1014 (2004).
    Google Scholar 
    Stears, K. & Shrader, A. M. Increases in food availability can tempt oribi antelope into taking greater risks at both large and small spatial scales. Anim. Behav. 108, 155–164 (2015).
    Google Scholar 
    Creel, S. Toward a predictive theory of risk effects: Hypotheses for prey attributes and compensatory mortality. Ecology 92, 2190–2195 (2011).PubMed 

    Google Scholar 
    Périquet, S. et al. Effects of lions on behaviour and endocrine stress in plains zebras. Ethology 123, 667 (2017).
    Google Scholar 
    Stears, K., Schmitt, M. H., Wilmers, C. C. & Shrader, A. M. Mixed-species herding levels the landscape of fear. Proc. R. Soc. B Biol. Sci. 287, 20192555 (2020).
    Google Scholar 
    Schmitt, M. H., Stears, K., Wilmers, C. C. & Shrader, A. M. Determining the relative importance of dilution and detection for zebra foraging in mixed-species herds. Anim. Behav. 96, 151–158 (2014).
    Google Scholar 
    Meise, K., Franks, D. W. & Bro-Jørgensen, J. Alarm communication networks as a driver of community structure in African savannah herbivores. Ecol. Lett. 23, 293–304 (2020).PubMed 

    Google Scholar 
    Codron, D., Hofmann, R. R. & Clauss, M. Morphological and physiological adaptations for browsing and grazing. In The Ecology of Browsing and Grazing II (eds Gordon, I. J. & Prins, H. H. T.) 81–125 (Springer, 2019).
    Google Scholar 
    Odadi, W. O., Karachi, M. K., Abdulrazak, S. A. & Young, T. P. African wild ungulates compete with or facilitate cattle depending on season. Science 333, 1753–1755 (2011).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Maestre, F. T., Callaway, R. M., Valladares, F. & Lortie, C. J. Refining the stress-gradient hypothesis for competition and facilitation in plant communities. J. Ecol. 97, 199–205 (2009).
    Google Scholar 
    de Jonge, M. M. J. et al. Conditional love? Co-occurrence patterns of drought-sensitive species in European grasslands are consistent with the stress-gradient hypothesis. Glob. Ecol. Biogeogr. 30, 1609–1620 (2021).PubMed 
    PubMed Central 

    Google Scholar 
    Franks, D. W., Weiss, M. N., Silk, M. J., Perryman, R. J. Y. & Croft, D. P. Calculating effect sizes in animal social network analysis. Methods Ecol. Evol. 12, 33–41 (2021).
    Google Scholar 
    Estes, J. A. et al. Trophic downgrading of planet earth. Science 333, 301–306 (2011).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Meise, K., Franks, D. W. & Bro-Jørgensen, J. Multiple adaptive and non-adaptive processes determine responsiveness to heterospecific alarm calls in African savannah herbivores. Proc. R. Soc. B Biol. Sci. 285, 20172676 (2018).
    Google Scholar 
    Blumstein, D. T., Bitton, A. & DaVeiga, J. How does the presence of predators influence the persistence of antipredator behavior? J. Theor. Biol. 239, 460–468 (2006).ADS 
    MathSciNet 
    PubMed 
    MATH 

    Google Scholar 
    Riggio, J. et al. Lion populations may be declining in Africa but not as Bauer et al. suggest. Proc. Natl. Acad. Sci. 113, 201521506 (2015).
    Google Scholar 
    Bauer, H. et al. Lion (Panthera leo) populations are declining rapidly across Africa, except in intensively managed areas. Proc. Natl. Acad. Sci. 112, 14894–14899 (2015).ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Pettorelli, N., Bro-Jørgensen, J., Durant, S. M., Blackburn, T. & Carbone, C. Energy availability and density estimates in African ungulates. Am. Nat. 173, 698–704 (2009).PubMed 

    Google Scholar 
    Haile, G. G. et al. Projected impacts of climate change on drought patterns over East Africa. Earth’s Future 8, 1–23 (2020).
    Google Scholar 
    Devine, A. P., McDonald, R. A., Quaife, T. & Maclean, I. M. D. Determinants of woody encroachment and cover in African savannas. Oecologia 183, 939–951 (2017).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Kiffner, C. et al. Long-term population dynamics in a multi-species assemblage of large herbivores in East Africa. Ecosphere 8, e02027 (2017).
    Google Scholar 
    Prins, H. H. T. & Loth, P. E. Rainfall patterns as background to plant phenology in northern Tanzania. J. Biogeogr. 15, 451–463 (1988).
    Google Scholar 
    Beattie, K., Olson, E. R., Kissui, B., Kirschbaum, A. & Kiffner, C. Predicting livestock depredation risk by African lions (Panthera leo) in a multi-use area of northern Tanzania. Eur. J. Wildl. Res. 66, 11 (2020).
    Google Scholar 
    Kasozi, H. & Montgomery, R. A. Variability in the estimation of ungulate group sizes complicates ecological inference. Ecol. Evol. 10, 6881–6889 (2020).PubMed 
    PubMed Central 

    Google Scholar 
    USGS. MOD13Q1 v006 MODIS/Terra Vegetation Indices 16-Day L3 Global 250 m SIN Grid. 10.5067/MODIS/MOD13Q1.006 (2020).R Core Team. R: A Language and Environment for Statistical Computing. http://www.r-project.org/. Accessed January 02, 2022 (2021).Dice, L. R. Measures of the amount of ecologic association between species. Ecology 26, 297–302 (1945).
    Google Scholar 
    Croft, D. P., James, R. & Krause, J. Exploring Animal Social Networks (Princeton University Press, 2008).
    Google Scholar 
    Besag, J. & Clifford, P. Generalized Monte Carlo significance tests. Biometrika 76, 633–642 (1989).MathSciNet 
    MATH 

    Google Scholar 
    Hayward, M. W. & Kerley, G. I. H. Prey preferences of the lion (Panthera leo). J. Zool. 267, 309–322 (2005).
    Google Scholar 
    Codron, D. et al. Diets of savanna ungulates from stable carbon isotope composition of faeces. J. Zool. 273, 21–29 (2007).
    Google Scholar 
    Kartzinel, T. R. & Pringle, R. M. Multiple dimensions of dietary diversity in large mammalian herbivores. J. Anim. Ecol. 89, 1482–1496 (2020).PubMed 

    Google Scholar 
    Prins, H. H. T. & Douglas-Hamilton, I. Stability in a multi-species assemblage of large herbivores in East Africa. Oecologia 83, 392–400 (1990).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Tournier, E. et al. Differences in diet between six neighbouring groups of vervet monkeys. Ethology 120, 471–482 (2014).
    Google Scholar 
    Humphries, B. D., Ramesh, T. & Downs, C. T. Diet of black-backed jackals (Canis mesomelas) on farmlands in the KwaZulu-Natal Midlands, South Africa. Mammalia 80, 405–412 (2016).
    Google Scholar  More

  • in

    Adsorption characteristics and mechanisms of Cd2+ from aqueous solution by biochar derived from corn stover

    Thermogravimetric/differential thermogravimetry analyses of corn stoverThermogravimetric/Differential Thermogravimetry (TG/DTG) curves are shown in Fig. 2. The pyrolysis process of corn stover could be divided into three stages. The first stage was the dehydration stage, which occurred at approximately 55–125 °C, and the weight loss was mainly accounted for by water19. The second stage was the pyrolysis stage, which occurred at approximately 200–400 °C and mainly involved the decomposition of cellulose, hemicellulose and a small amount of lignin. This process involved the generation of CO and CO2 and the breaking of carbonaceous polymer bonds20. In addition, a shoulder peak in the range of 265 to 300 °C in the DTG diagram could be caused by side chain decomposition and glycosidic bond cleavage of xylan during the pyrolysis of corn stover21. The third stage was the carbonization stage, which occurred above 400 °C; this stage mainly involved the decomposition of lignin22,23. The carbonization process was relatively slow after 600 °C; this process was called the passive pyrolysis stage24. In general, the TG loss in the pyrolysis process of corn stover was mainly from the moisture in the biomass sample in the first stage. Hemicellulose and cellulose decomposition occurred in the second stage, and lignin decomposition occurred in the third stage25. In this experiment, the minimum pyrolysis temperature for the preparation of biochar was 400 °C. Therefore, the pyrolysis of biochar was relatively complete.Figure 2TG/DTG curves of corn stover.Full size imageCharacterization of biocharYield and specific surface area analysesThe yield and SBET are presented in Table 2. BC, BC-H and BC-OH represent the origin, acid-modified, and base-modified biochar, respectively. The yield of corn stover biochar exhibited a negative correlation with the temperature and decreased from 39.65 to 28.26% when the pyrolysis temperature increased from 400 to 700 °C. This phenomenon could have occurred due to the loss of more volatile substances and the thermal degradation of lignocellulose with increasing temperature, thus reducing the yield of biochar26,27. The SBET of the original biochar showed little difference below 700 °C but increased significantly at 700 °C. Combined with the SEM analysis (Fig. 3), at low temperatures, more ashes on the surface of biochar could block its pores so that the change in SBET was not obvious. At 700 °C, because the ash content significantly reduced and the pyrolysis was more sufficient, the pores of the biochar were more developed, and the SEBT significantly increased. The SBET of the acid/base-modified biochar increased with increasing temperature. The SBET of biochar was larger than that of the original biochar after acid and base modification at 400–600 °C. This phenomenon occurred because the porous structure of biochar was enhanced by acid and base modification28. Moreover, pickling removed most of the inorganic substances in biochar and reduced ash content, while alkali washing removed the tar on the surface of biochar to a certain extent29. However, at 700 °C, the SBET of biochar after acid/base modification was lower than that of the original biochar. Combined with the SEM (Fig. 4), the acid/base modification caused the nanopores of biochar to collapse into mesopores or macropores30. Therefore, the well-developed pore structure of the biochar prepared at 700 °C was destroyed by acid/base modification, resulting in a significant decrease in SBET.Table 2 Yield and SBET of different biochars.Full size tableFigure 3SEM (ZEISS) images of biochar at different pyrolysis temperatures: (a) C1, (b) C8, (c) C12, and (d) C16.Full size imageFigure 4SEM (OPTON) images of C16 biochar and its acid/base modification: (a) C16, (b) C16-H, and (c) C–OH.Full size imageScanning electron microscopy analysisThe C1, C8, C12 and C16 biochars had the highest Cd2+ removal rates at 400, 500, 600 and 700 °C, respectively. Therefore, these BCs were selected for SEM analysis. Figure 3 clearly showed that as the pyrolysis temperature increased from 400 to 700 °C, the pore structure of biochar became more developed, with a smaller pore size and more pores. Although there were numerous pores at 500 °C, the pores were not fully developed and were blocked inside. At 700 °C, the skeleton structure appeared, and the particle size of ash blocked in the pores decreased.By taking C16 biochar with the highest removal rate of Cd2+ as the research object, the changes in the biochar surface before and after modification were compared. C16-H and C16-OH represent acid-modified and base-modified biochar, respectively. After acid/base modification, the ash content on the surface of the biochar decreased, and the pore size increased (Fig. 4). Therefore, some skeleton structures could collapse after corrosion, which was consistent with the previous SBET results. Sun et al. discovered that citric acid-modified biochar would lead to micropore wall collapse and micropore loss, resulting in a reduction in SBET31. This finding was in agreement with the results of our study.Fourier transform infrared spectroscopy analysisThe FTIR spectra of biochar at different pyrolysis temperatures are presented in Fig. 5a.Figure 5FTIR spectra of corn stover biochar: (a) different pyrolysis temperatures and (b) different modification treatments.Full size imageAs the pyrolysis temperature increased from 300 to 700 °C, the absorption peak intensity showed a downwards trend. There was a remarkable decrease in features associated with stretch O–H (3400 cm−1)32. The vibration peaks of C–H (2924 cm−1) and C=O (1610 cm−1) decreased with increasing temperature, which could be due to the reduction in –CH2 and –CH3 groups of small molecules and the pyrolysis of C=O into gas or liquid byproducts at high temperatures33. In addition, the peak at 1435 cm−1 was identified as the vibration of C=C bonds belonging to the aromatic skeleton of biochar. A decrease in the absorbance peaks was found at 1115 cm−1, which corresponded to C–O–C bonds. The ratio of intensities for C=C/C=O (1550–1650 cm−1) and C–O–C (1115 cm−1) to the shoulder (1100–1200 cm−1) gradually decreased, and the loss of –OH at 3444 cm−1 indicated that the oxygen content in biochar reduced. The cellulose and wood components were dehydrated, and the degree of biochar condensation increased at higher temperatures. The bending vibration peaks of Ar–H at 856 and 877 cm−1 changed little at different temperatures, which showed that the aromatic rings were relatively stable below 700 °C34. Combined with the above analysis the condensation degree of biochar increased gradually above 400 °C35,36. In summary, as the pyrolysis temperature increased, the degree of aromatization of biochar improved, and the numbers of oxygen-containing functional groups decreased continuously.Figure 5b showed that after acid/base modification, the absorbance peaks at 3444 cm−1, 1610 cm−1 and 1115 cm−1 increased, indicating that the number of oxygen-containing functional groups increased. However, the stretching vibration peak of aromatic ring skeleton C=C (1435 cm−1) and the bending vibration peaks of Ar–H (856–877 cm−1) changed little. The number of functional groups of acid-modified biochar increased more than that of alkali-modified biochar. Mahdi et al. found that acid modification increased the number of functional groups in a study of biochar modification37. After acid/base modification, the number of oxygen-containing functional groups, such as hydroxyl and carboxyl groups, increased.Optimization of biocharFigure 6 illustrates that the removal rates of Cd2+ by corn stover biochar (original, acid-modified, and base-modified biochars) consistently increased with increasing pyrolysis temperature. The highest removal rate reached 95.79% at 700 °C. The removal rate decreased after modification, especially after pickling. The results showed that C16 biochar had the best removal effect on Cd2+.Figure 6Cd2+ removal rate of different biochars (BC: original biochar, BC-OH: alkali-modified biochar, and BC-H: acid-modified biochar).Full size imageIntuitive and variance analyses were employed to explore the influences of biochar preparation conditions on the removal rate of Cd2+.

    1.

    Intuitive analysis
    The intuitive analysis of the orthogonal experiment is shown in Table 3 and Fig. 7. The pyrolysis temperature had the most significant influence on the removal of Cd2+, followed by the retention time and finally the heating rate. Therefore, the optimal conditions for biochar preparation were a pyrolysis temperature of 700 °C, a retention time of 2.5 h, and a heating rate of 5 °C/min.

    2.

    Variance analysis
    Variance analysis showed that the effect of pyrolysis temperature on the removal rate of Cd2+ was very significant (Table 4). The effects of retention time and heating rate were not significant. This phenomenon was consistent with the conclusions obtained in the intuitive analysis.

    Table 3 Intuitive analyses of influencing factors of biochar preparation.Full size tableFigure 7Intuitive analysis diagram of influencing factors for biochar preparation.Full size imageTable 4 Variance analysis.Full size tableAnalysis of adsorption mechanismThe SBET of the unmodified biochar did not change significantly with temperature, which indicated that SBET could potentially not be a critical factor for Cd2+ adsorption. Qi et al. obtained a similar conclusion when studying the adsorption of Cd2+ in water by chicken litter biochar38. In addition to SBET, the four primary mechanisms involved in the removal of heavy metal ions by biochar were as follows: (1) Ion exchange: the alkali or alkaline earth metals in biochar (K+, Ca2 +, Na+, and Mg2+) were the dominant cations in ion exchange39. (2) The complexation of oxygen-containing functional groups mainly included hydroxyl and carboxyl groups40. (3) Mineral precipitation: Cd2+ was precipitated by minerals on the surface of biochar to form Cd3(PO4)2 and CdCO341. Soluble cadmium precipitated with some anions released by biochar, such as CO32−, PO43− and OH−42,43. (4) π electron interaction: Cd2+ coordinated with the π electrons of C=C or C=O at low pyrolysis temperatures43,44. Biochar contains more aromatic structures at high pyrolysis temperatures, which could provide more π electrons. Therefore, the π electron interaction in adsorption of Cd2+ was effectively enhanced45.C1, C8, C12 and C16 were selected to study the adsorption mechanism. Related physicochemical properties are given in Table 5.Table 5 Physicochemical properties of biochar at different pyrolysis temperatures.Full size tableThe CEC of biochar gradually increased as the pyrolysis temperature increased, reaching a maximum at 600 °C and slightly decreasing at 700 °C. This phenomenon could have occurred because the crystalline minerals under high pyrolysis temperatures inhibited the exchange of cations on the surface of biochar with Cd2+ in aqueous solution46. Nevertheless, CEC did not change significantly with temperature; thus, CEC was not the main adsorption mechanism. With increasing pyrolysis temperature, the number of acidic functional groups decreased gradually, while the number of alkaline functional groups increased. The main functional groups used to remove Cd2+ were generally considered acidic oxygen-containing functional groups. However, the number of these functional groups decreased with increasing pyrolysis temperature, which weakened the complexation on the surface of the biochar. However, this result was contradictory to the results of Cd2+ adsorption. Therefore, the functional groups were not the main adsorption mechanism.To further explore the adsorption mechanism of Cd2+, the biochar before and after the adsorption of Cd2+ was characterized by XRD. As shown in Fig. 7a, C16-100Cd and C16-200Cd represented the biochar after Cd2+ adsorption when the concentrations of cadmium solution were 100 mg/l and 200 mg/l, respectively. The results showed that new peaks appeared at 30.275° and 36.546° after adsorption, corresponding to CdCO3. The spike at 29.454° was due to Cd(OH)2. Additionally, the intensity of the CdCO3 peak increased significantly from C16-100Cd to C16-200Cd, indicating that mineral precipitation occurred in adsorption. Liu et al. found similar results in a study on removing Cd2+ from water by blue algae biochar12. However, as the concentration of Cd2+ increased from 0 to 200 mg/L, the diffraction peak at 2θ = 29.454° first increased and then decreased. This because the peak position of CaCO3 at 2θ = 29.369° was very close to Cd(OH)2 at 2θ = 29.454°. At low concentrations, the production of Cd(OH)2 was greater than that of CdCO3. When the initial concentration of Cd2+ increased, more CO32− released by CaCO3 combined with Cd2+ to form CdCO3, resulting in a reduction in the diffraction peak.As presented in Fig. 8b, the peak intensities of CdCO3 and Cd(OH)2 gradually increase with increasing pyrolysis temperature. On the one hand, this phenomenon could be ascribed to the increase in the mineral content of biochar with increasing pyrolysis temperature. On the other hand, the pH value of biochar increased with increasing pyrolysis temperature. In this way, more OH− was released, thus forming more Cd(OH)2. Wang et al. obtained similar results42. Moreover, the peak intensity of KCl at 2θ = 28.347° decreased after adsorption, as shown in Fig. 8a, which indicated that ion exchange took part in adsorption.Figure 8XRD images: (a) before and after adsorption of Cd2+ on C16 biochar and (b) Cd2+ adsorption by biochar at different pyrolysis temperatures.Full size imageIn addition, the FTIR spectra showed that the number of functional groups, such as C=C and C=O, in biochar decreased with increasing pyrolysis temperature, leading to the weakening of cation–π interactions between Cd2+ and C=C and C=O. In contrast, due to the enhanced aromatization of functional groups on the surface of biochar, many lone pair electrons existed in the electron-rich domains of the graphene-like structure, which in turn enhanced the cation–π interactions. Harvey et al., based on the study of Cd2+ adsorption by plant biochar, concluded that the electron-rich domain bonding mechanism between Cd2+ and the graphene-like structure on the surface of biochar played a more significant role in biochar with a high degree of carbonization45. Therefore, π-electron interactions could play a dominant role in Cd2+ adsorption on high-temperature pyrolysis biochar. Moreover, the results showed that the number of alkaline functional groups increased while acidic functional groups decreased with the increase in pyrolysis temperature. It is generally believed that acidic functional groups could withdraw electrons, and basic functional groups could donate electrons47,48. The biochar with higher pyrolysis temperature contained more alkaline functional groups, which improved the electron donating ability of biochar and enhanced the cation–π electron effect.In summary, mineral precipitation and π electron coordination were the main mechanisms of removing Cd2+ from water by corn stover biochar. This phenomenon explained why the Cd2+ removal rate of acid/base–modified biochar decreased. After modification, the functional groups on the surface of biochar increased, but the inorganic minerals were removed. Pickling resulted in the loss of soluble minerals and alkaline functional groups on the surface of biochar, which was not conducive to adsorption49. After alkaline washing, more PO43−, CO32− and HCO3− were released, thereby reducing the mineral precipitation50,51. Since NaOH had a weaker destructive effect than HCl and introduced some OH−, alkaline washing had little effect on the removal rate of Cd2+.Adsorption isotherm and adsorption kineticsAdsorption isothermThe adsorption isotherms were fitted with Langmuir (Eq. 3) and Freundlich (Eq. 4) models, as shown in Fig. 9, and the fitting parameters are listed in Table 6.Figure 9Adsorption isotherm.Full size imageTable 6 Fitting parameters of the adsorption isotherm model.Full size tableThe Langmuir model (R2  > 0.963) was more suitable than the Freundlich model (R2  > 0.919), indicating that the adsorption sites of biochar were evenly distributed, and adsorption was mainly monolayer. Parameter KL reflected the difficulty of adsorption and was generally divided into four types: unfavourable (KL  > 1), favourable (0  More

  • in

    Characterization of Pseudoterranova ceticola (Nematoda: Anisakidae) larvae from meso/bathypelagic fishes off Macaronesia (NW Africa waters)

    Buchmann, K. & Mehrdana, F. Effects of anisakid nematodes Anisakis simplex (s.l.), Pseudoterranova decipiens (s.l.) and Contracaecum osculatum (s.l.) on fish and consumer health. Food Waterborne Parasitol. 4, 13–22. https://doi.org/10.1016/j.fawpar.2016.07.003 (2016).Article 

    Google Scholar 
    Mattiucci, S., Cipriani, P., Levsen, A., Paoletti, M. & Nascetti, G. Molecular epidemiology of Anisakis and anisakiasis: An ecological and evolutionary road map. Adv. Parasitol. https://doi.org/10.1016/bs.apar.2017.12.001 (2018).Article 
    PubMed 

    Google Scholar 
    Mattiucci, S., Cipriani, P., Paoletti, M., Levsen, A. & Nascetti, G. Reviewing biodiversity and epidemiological aspects of anisakid nematodes from the North-east Atlantic Ocean. J. Helminthol. https://doi.org/10.1017/S0022149X1700027X (2017).Article 
    PubMed 

    Google Scholar 
    Moravec, F. & Justine, J.-L. Erection of Euterranova n. gen. and Neoterranova n. gen. (Nematoda, Anisakidae), with the description of E. dentiduplicata n. sp. and new records of two other anisakid nematodes from sharks off New Caledonia. Parasite 27, 58. https://doi.org/10.1051/parasite/2020053 (2020).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Shamsi, S. & Suthar, J. Occurrence of Terranova larval types (nematoda: Anisakidae) in Australian marine fish with comments on their specific identities. Peer J. 4, e1722. https://doi.org/10.7717/peerj.1722 (2016).Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Timi, J. T. et al. Molecular identification, morphological characterization and new insights into the ecology of larval Pseudoterranova cattani in fishes from the Argentine coast with its differentiation from the Antarctic species, P. decipiens sp. E (Nematoda: Anisakidae). Vet. Parasitol. 199, 59–72 (2014).CAS 
    PubMed 

    Google Scholar 
    Deardorff, T. L. Redescription of Pulchrascaris chiloscyllii (Johnston and Mawson, 1951) (Nematoda: Anisakidae), with comments on species in Pulchrascaris and Terranova. Proc. Helminthol. Soc. Wash. 54, 28–39 (1987).
    Google Scholar 
    Cannon, L. R. G. Some larval ascaridoids from south-eastern queensland marine fishes. Int. J. Parasitol. 7, 233–243 (1977).CAS 
    PubMed 

    Google Scholar 
    Levsen, A. & Lunestad, B. T. Anisakis simplex third stage larvae in Norwegian spring spawning herring (Clupea harengus L.), with emphasis on larval distribution in the flesh. Vet. Parasitol. 171, 247–253 (2010).PubMed 

    Google Scholar 
    Berland, B., (1989) Identification of fish larval nematodes from fish. In: Möller H, editor. Nematode problems in North Atlantic fish. Report from a workshop in Kiel, 3 4 16–22.Zhu, X., D’Amelio, S., Paggi, L. & Gasser, R. B. Assessing sequence variation in the internal transcribed spacers of ribosomal DNA within and among members of the Contracaecum osculatum complex (nematoda: Ascaridoidea: Anisakidae). Parasitol. Res. 86, 677–683 (2000).CAS 
    PubMed 

    Google Scholar 
    Nadler, S. A. & Hudspeth, D. S. S. Phylogeny of the ascaridoidea (Nematoda: Ascaridida) based on three genes and morphology hypotheses of structural and sequence evolution. J. Parasitol. 86, 380–393. https://doi.org/10.1645/0022-3395(2000)086[0380:POTANA]2.0.CO;2 (2000).Article 
    CAS 
    PubMed 

    Google Scholar 
    Mattiucci, S. et al. Genetic and morphological approaches distinguish the three sibling species of the Anisakis simplex species complex, with a species designation as Anisakis berlandi n. sp. for A simplex sp. C (Nematoda: Anisakidae). J. Parasitol. 100, 199–214. https://doi.org/10.1645/12-120.1 (2014).Article 
    CAS 
    PubMed 

    Google Scholar 
    Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403–410 (1990).CAS 
    PubMed 

    Google Scholar 
    Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Mol. Biol. Evol. 35, 1547–1549 (2018).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Nagy, L. G. et al. Re-mind the gap! Insertion – deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi. PLoS ONE 7, 1–9 (2012).
    Google Scholar 
    Suchard, M. A. et al. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evol. 4, 1–5 (2018).
    Google Scholar 
    Rambaut, A., Drummond, A. J., Xie, D., Baele, G. & Suchard, M. A. Posterior summarization in bayesian phylogenetics using tracer 1.7. Syst. Biol. 67, 901–904 (2018).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Cipriani, P. et al. Anisakid nematodes in Trichiurus lepturus and Saurida undosquamis (Teleostea) from the South-West Indian Ocean : Genetic evidence for the existence of sister species within Anisakis typica (s.l.), and food-safety considerations. Food Waterborne Parasitol. 28, e00177. https://doi.org/10.1016/j.fawpar.2022.e00177 (2022).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Safonova, A. E. First report on molecular identification of Anisakis simplex in Oncorhynchus nerka from the fish market, with taxonomical issues within Anisakidae. J. Nematol. 53(1), 10. https://doi.org/10.21307/jofnem-2021-023 (2021).Article 
    CAS 

    Google Scholar 
    Takano, T. & Sata, N. Multigene phylogenetic analysis reveals non-monophyly of Anisakis s.l. and Pseudoterranova (Nematoda: Anisakidae). Parasitol. Int. 91, 102631. https://doi.org/10.1016/j.parint.2022.102631 (2022).Article 
    CAS 
    PubMed 

    Google Scholar 
    Leiper, R. T. & Atkinson, E. L. Parasitic worms, with a note on a free-living nematode. British Museum (Natural History). Bristish Antarctic (“Terra Nova”) expedition, 1910. Natural History Report. Zool 2(3), 19–60 (1915).
    Google Scholar 
    Leiper, R. T. & Atkinson, E. L. Helminthes of the British Antarctic expedition 1910–1913. Proc. Zool. Soc. London, 222–226 (1914).Myers, B. J. Phocanema, a new genus for the anisakid nematode of seals. Can. J. Zool. 37, 459–465 (1959).
    Google Scholar 
    Mattiucci, S., Paoletti, M., Webb, S. C. & Nascetti, G. Pseudoterranova and Contracaecum. In Molecular detection of human parasitic pathogens (ed. Liu, D.) 645–656 (CRC Press, 2012).
    Google Scholar 
    Mozgovoĭ, A.A., (1953) Ascaridata of animals and man, and the diseases caused by them. In: Osnovy nematodologii. Vol. II. Izd. AN SSSR, Moskva (In Russian)Johnston, T.H., Mawson, P.M., (1939) Internal parasites of the pigmy sperm whale. Rec. South Aust Museum.6. http://www.biodiversitylibrary.org/item/126147.Gibson, D. I. The systematics of ascaridoid nematodes-a current assessment. In Stone A (eds Platt, H. & Khalil, L.) 321–338 (Academic Press, 1983).
    Google Scholar 
    Shamsi, S., Barton, D. P. & Zhu, X. Description and characterisation of Terranova pectinolabiata n. sp. (Nematoda: Anisakidae) in great hammerhead shark, Sphyrna mokarran (Rüppell, 1837), in Australia. Parasitol. Res. 118, 2159–2168. https://doi.org/10.1007/s00436-019-06360-4 (2019).Article 
    PubMed 

    Google Scholar 
    Shamsi, S., Barton, D. P. & Zhu, X. Description and genetic characterisation of Pulchrascaris australis n. sp. in the scalloped hammerhead shark, Sphyrna lewini (Griffin & Smith) in Australian waters. Parasitol. Res. https://doi.org/10.1007/s00436-020-06672-w (2020).Article 
    PubMed 

    Google Scholar 
    González-Solís, D. et al. Parasitic nematodes of marine fishes from Palmyra Atoll, East Indo-Pacific, including a new species of Spinitectus (Nematoda, Cystidicolidae). Zookeys. 2019, 1–26 (2019).
    Google Scholar 
    Jabbar, A. et al. Larval anisakid nematodes in teleost fishes from Lizard Island, northern great barrier reef Australia. Mar. Freshw. Res. 63, 1283. https://doi.org/10.1071/MF12211 (2012).Article 

    Google Scholar 
    ICES. (2012) Pseudoterranova larvae (“codworm”; Nematoda) in fish. Revised and updated by Matt Longshaw. ICES Identification Leaflets for diseases and parasites of fish and shellfish. Leaflet No. 7. 4 pp.Arai, H. P. & Smith, J. W. Guide to the parasites of fishes of Canada part V: Nematoda. Zootaxa 4185, 1. https://doi.org/10.11646/zootaxa.4185.1.1 (2016).Article 

    Google Scholar 
    Hurst, H. J. Identification and description of larval Anisakis simplex and Pseudoterranova decipiens (anisakidae: Nematoda) from New Zealand waters. New Zeal J. Mar. Freshw. Res. 18, 177–186 (1984).
    Google Scholar 
    Hernández-Orts, J. S. et al. Description, microhabitat selection and infection patterns of sealworm larvae (Pseudoterranova decipiens species complex, Nematoda: Ascaridoidea) in fishes from Patagonia Argentina. Parasite Vector. 6, 1–15 (2013).
    Google Scholar 
    Shiraki, T. Larval nematodes of family anisakidae (Nematoda) in the northern sea of Japan as a causative agent of eosinophilic phlegmone of granuloma in the human gastro-intestinal tract. Acta Med. Biol. 22, 57–98 (1974).
    Google Scholar 
    Berland, B. Nematodes from some Norwegian marine fishes. Sarsia 2, 1–50. https://doi.org/10.1080/00364827.1961.10410245 (1961).Article 

    Google Scholar 
    George-Nascimento, M. & Llanos, A. Micro-evolutionary implications of allozymic and morphometric variations in sealworms Pseudoterranova sp. (Ascaridoidea: Anisakidae) among sympatric hosts from the Southeastern Pacific Ocean. Int. J. Parasitol. 25, 1163–1171 (1995).CAS 
    PubMed 

    Google Scholar 
    Deardorff, T. L., Kliks, M. M., Rosenfeld, M. E., Rychlinski, R. A. & Desowitz, R. S. Larval, ascaridoid nematodes from fishes near the Hawaiian Islands, with commonents on pathogenicity experiments. Pacific Sci. 36, 187–201 (1982).
    Google Scholar 
    Deardorff, T. L., Kliks, M. M. & Desowitz, R. S. Histopathology induced by larval Terranova (Type HA) (nematoda: Anisakinae) in experimentally infected rats. J. Parasitol. 69, 191–195 (1983).CAS 
    PubMed 

    Google Scholar 
    Kuramochi, T. et al. Stomach nematodes of the family anisakidae collected from the cetaceans stranded on or incidentally caught off the coasts of the Kanto districts and adjoining areas. Mem. Nat. Museum. Nat. Sci. 37, 177–192 (2001).
    Google Scholar 
    Deardorff, T. L., Raybourne, R. B. & Desowitz, R. S. Description of a third-stage larva, Terranova type Hawaii A (nematoda: Anisakinae), from Hawaiian fishes. J. Parasitol. 70, 829–831 (1984).CAS 
    PubMed 

    Google Scholar 
    González-Solís, D., Vidal-Martínez, V. M., Antochiw-Alonso, D. M. & Ortega-Argueta, A. Anisakid nematodes from stranded pygmy sperm whales, Kogia breviceps (Kogiidae), in three localities of the Yucatan peninsula. Mexico. J. Parasitol. 92, 1120–1122 (2006).
    Google Scholar 
    Santos, C. P. & Lodi, L. Occurrence of Anisakis physeteris Baylis, 1923 and Pseudoterranova sp. (Nematoda) in pygmy sperm whale Kogia breviceps (De Blainvillei, 1838) (Physeteridae) in northeastern coast of Brazil. Mem. Inst. Oswaldo Cruz. 93, 187–188. https://doi.org/10.1590/s0074-02761998000200009 (1998).Article 
    CAS 
    PubMed 

    Google Scholar 
    Bloodworth, B. E. & Odell, D. K. Kogia breviceps (cetacea: Kogiidae). Mam. Species. 819, 1–12. https://doi.org/10.1644/819.1 (2008).Article 

    Google Scholar 
    Deardorff, T. L. & Overstreet, R. M. Terranova ceticola n. sp. (Nematoda: Anisakidae) from the dwarf sperm whale; Kogia simus (Owen), in the Gulf of Mexico. Syst. Parasitol. 3, 25–28 (1981).
    Google Scholar 
    Abollo, E., Santiago, P., (2002) SEM study of Anisakis brevispiculata Dollfus, 1966 and Pseudoterranova ceticola (Deardoff and Overstreet, 1981) (Nematoda: Anisakidae), parasites of the pygmy sperm whale Kogia breviceps. Sci. Mar. 66 3 49 255Di Deco, M. A., Orecchia, P., Paggi, L. & Petrarca, V. Morphometric stepwise discriminant analysis of three genetically identified species within Pseudoterranova decipiens (Krabbe, 1878) (Nematoda: Ascaridida). Syst. Parasitol. 29, 81–88 (1994).
    Google Scholar 
    George-Nascimento, M. & Urrutia, X. Pseudoterranova cattani sp. nov. (Ascaridoidea: Anisakidae), a parasite of the South American sea lion Otaria byronia De Blainville from Chile. Rev. Chil. Hist. Nat. 73, 93–98. https://doi.org/10.4067/s0716-078×2000000100010 (2000).Article 

    Google Scholar 
    Mattiucci, S. et al. Allozyme and morphological identification of Anisakis, Contracaecum and Pseudoterranova from Japanese waters (Nematoda, Ascaridoidea). Syst Parasitol. 40, 81–92 (1998).
    Google Scholar 
    Paggi, L. et al. Pseudoterranova decipiens species A and B (Nematoda, Ascaridoidea): Nomenclatural designation, morphological diagnostic characters and genetic markers. Syst. Parasitol. 45, 185–197. https://doi.org/10.1023/A:1006296316222 (2000).Article 
    CAS 
    PubMed 

    Google Scholar 
    Valentini, A. et al. Genetic relationships among Anisakis species (Nematoda: Anisakidae) inferred from mitochondrial cox2 sequences, and comparison with allozyme data. J. Parasitol. 92, 156–166 (2006).CAS 
    PubMed 

    Google Scholar 
    Colón-Llavina, M. M. et al. Additional records of metazoan parasites from Caribbean marine mammals, including genetically identified anisakid nematodes. Parasitol Res. 105, 1239–1252 (2009).PubMed 

    Google Scholar 
    Cavallero, S., Nadler, S. A., Paggi, L., Barros, N. B. & D’Amelio, S. Molecular characterization and phylogeny of anisakid nematodes from cetaceans from southeastern Atlantic coasts of USA, Gulf of Mexico, and Caribbean Sea. Parasitol. Res. 108, 781–792 (2011).PubMed 

    Google Scholar 
    Kijewska, A., Dzido, J., Shukhgalter, O. & Rokicki, J. Anisakid parasites of fishes caught on the African shelf. J. Parasitol. 95, 639–645 (2009).PubMed 

    Google Scholar 
    Quiazon, K. M. A., Santos, M. D. & Yoshinaga, T. Anisakis species (nematoda: Anisakidae) of dwarf sperm whale kogia sima (Owen, 1866) stranded off the pacific coast of southern Philippine archipelago. Vet. Parasitol. https://doi.org/10.1016/J.VETPAR.2013.05.019 (2013).Article 
    PubMed 

    Google Scholar 
    Zhang, L., Du, X., An, R., Li, L. & Gasser, R. B. Identification and genetic characterization of Anisakis larvae from marine fishes in the South China Sea using an electrophoretic-guided approach. Electrophoresis 34, 888–894 (2013).CAS 
    PubMed 

    Google Scholar 
    Luo, H.-Y., Chen, H.-Y., Chen, H.-G. & Shih, H.-H. Scavenging hagfish as a transport host of anisakid nematodes. Vet. Parasitol. 218, 15–21. https://doi.org/10.1016/j.vetpar.2016.01.005 (2016).Article 
    PubMed 

    Google Scholar 
    Kuhn, T., Hailer, F., Palm, H. W. & Klimpel, S. Global assessment of molecularly identified Anisakis dujardin, 1845 (nematoda: Anisakidae) in their teleost intermediate hosts. Folia Parasitol. (Praha). 60, 123–134. https://doi.org/10.14411/fp.2013.013 (2013).Article 
    CAS 
    PubMed 

    Google Scholar 
    Grainger, J. N. R. The Identity of the larval nematodes found in the body muscles of the cod (Gadus callarias L.). Parasitology 49, 121–131 (1959).CAS 
    PubMed 

    Google Scholar 
    Costa, G., Chada, T., Melo-Moreira, E., Cavallero, S. & D’Amelio, S. Endohelminth parasites of the leafscale gulper shark, Centrophorus squamosus (Bonnaterre, 1788) (Squaliformes: Centrophoridae) off Madeira archipelago. Acta Parasitol. 59, 316–322. https://doi.org/10.2478/s11686-014-0247-x (2014).Article 
    PubMed 

    Google Scholar 
    Hermida, M. et al. Infection levels and diversity of anisakid nematodes in blackspot seabream, Pagellus bogaraveo, from Portuguese waters. Parasitol. Res. 110, 1919–1928 (2012).PubMed 

    Google Scholar 
    Sequeira, V. et al. Macroparasites as biological tags for stock identification of the bluemouth, Helicolenus dactylopterus (Delaroche, 1809) in Portuguese waters. Fish Res. 106, 321–328. https://doi.org/10.1016/j.fishres.2010.08.014 (2010).Article 

    Google Scholar 
    Shamsi, S., Spröhnle-Barrera, C. & Shafaet, H. M. Occurrence of Anisakis spp. (Nematoda: Anisakidae) in a pygmy sperm whale Kogia breviceps (Cetacea: Kogiidae) in Australian waters. Dis. Aquat. Organ. 134, 65–74. https://doi.org/10.3354/dao03360 (2019).Article 
    CAS 
    PubMed 

    Google Scholar 
    Mcalpine, D. F., Murison, L. D. & Hoberg, E. P. New records for the pygmy sperm whale, Kogia breviceps (physeteridae) from Atlantic Canada with notes on diet and parasites. Mar. Mammal. Sci. 13, 701–704. https://doi.org/10.1111/j.1748-7692.1997.tb00093.x (1997).Article 

    Google Scholar 
    Gunter, G. & Overstreet, R. Cetacean notes. I. Sei and rorqual whales on the Mississippi coast, a correction. II. A dwarf sperm whale in Mississippi sound and its helminth parasites. Gulf Res. Rep. 4, 479–481 (1974).
    Google Scholar 
    Mignucci-Giannoni, A. A., Hoberg, E. P., Siegel-Causey, D. & Williams, E. H. Metazoan parasites and other symbionts of cetaceans in the Caribbean. J. Parasitol. 84, 939–946 (1998).CAS 
    PubMed 

    Google Scholar 
    Vidal, O., Findley, L. T., Turk, P. J. & Boyer, R. E. Recent records of pygmy sperm whales in the Gulf of California. Mexico. Mar. Mammal. Sci. 3, 354–356. https://doi.org/10.1111/J.1748-7692.1987.TB00323.X (1987).Article 

    Google Scholar 
    Dollfus, R. P. Helminthofaune de Kogia breviceps (Blainxille, 1938) cetace odontocete. Recoltes du Dr R. Duguy. Ann. Sci. Natl. Charente-Maritime 4, 3–6 (1966).
    Google Scholar 
    MCAlpine, D.F., (2018) Pygmy and dwarf sperm whales. In: Encyclopedia of Marine Mammals. Elsevier p. 786–8.Fernández, R., Santos, M. B., Carrillo, M., Tejedor, M. & Pierce, G. J. Stomach contents of cetaceans stranded in the canary Islands 1996–2006. J. Mar. Biol. Assoc. United Kingdom. 89, 873–883 (2009).

    Google Scholar 
    Berrow, S., López Suárez, P., Jann, B., Ryan, C., Varela, J., Hazevoet, C.J., (2015) Recent and noteworthy records of Cetacea from the Cape Verde Islands. www.scvz.org. Accessed 1 Mar 2021.Mattiucci, S., Nascetti, G., (2008) Chapter 2 advances and trends in the molecular systematics of anisakid nematodes, with implications for their evolutionary ecology and host-parasite co-evolutionary processes. Adv. Parasitol. 66 47 148Measures, L.N., (2014) Anisakiosis and pseudoterranovosis. Reston, Virginia; https://doi.org/10.3133/cir1393McClelland, G. The trouble with sealworms (Pseudoterranova decipiens species complex, nematoda): A review. Parasitology 2002(124 Suppl), S183-203 (2009).
    Google Scholar 
    Alt, K. G., Cunze, S., Kochmann, J. & Klimpel, S. Parasites of three closely related Antarctic fish species (teleostei: Nototheniinae) from Elephant Island. Acta Parasitol. https://doi.org/10.1007/s11686-021-00455-8 (2021).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    McClelland, G. Phocanema decipiens (Nematoda: Anisakinae): Experimental infections in marine copepods. Can. J. Zool. 60, 502–509. https://doi.org/10.1139/z82-075 (1982).Article 

    Google Scholar 
    Marcogliese, D. J. Review of experimental and natural invertebrate hosts of sealworm (Pseudoterranova decipiens) and its distribution and abundance in macroinvertebrates in eastern Canada. NAMMCO Sci. Publ. 3, 27–37 (2001).
    Google Scholar 
    West, K. L. et al. Diet of pygmy sperm whales (Kogia breviceps) in the Hawaiian Archipelago. Mar. Mammal. Sci. 25, 931–943. https://doi.org/10.1111/j.1748-7692.2009.00295.x (2009).Article 

    Google Scholar 
    Kleinertz, S., Damriyasa, I. M., Hagen, W., Theisen, S. & Palm, H. W. An environmental assessment of the parasite fauna of the reef-associated grouper Epinephelus areolatus from Indonesian waters. J. Helminthol. 88, 50–63 (2014).CAS 
    PubMed 

    Google Scholar 
    Nadler, S. A. et al. Molecular phylogenetics and diagnosis of Anisakis, Pseudoterranova, and Contracaecum from northern pacific marine mammals. J. Parasitol. 91, 1413–1429 (2005).CAS 
    PubMed 

    Google Scholar 
    Weitzel, T. et al. Human infections with Pseudoterranova cattani nematodes. Chile. Emerg. Infect. Dis. 21, 1874–1875 (2015).CAS 
    PubMed 

    Google Scholar 
    Arizono, N., Miura, T., Yamada, M., Tegoshi, T. & Onishi, K. Human infection with Pseudoterranova azarasi roundworm. Emerg. Infect. Dis. 17, 555–556. https://doi.org/10.3201/eid1703.101350 (2011).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Kleinertz, S. et al. Gastrointestinal parasites of free-living Indo-Pacific bottlenose dolphins (Tursiops aduncus) in the Northern Red Sea. Egypt. Parasitol Res. 113, 1405–1415. https://doi.org/10.1007/s00436-014-3781-4 (2014).Article 
    CAS 
    PubMed 

    Google Scholar 
    Aco Alburqueque, R., Palomba, M., Santoro, M. & Mattiucci, S. Molecular identification of zoonotic parasites of the genus Anisakis (Nematoda: Anisakidae) from fish of the southeastern Pacific Ocean (off Peru coast). Pathogens. 9, 910. https://doi.org/10.3390/pathogens9110910 (2020).Article 
    CAS 
    PubMed Central 

    Google Scholar 
    Di Azevedo, M. I. N., Carvalho, V. L. & Iñiguez, A. M. Integrative taxonomy of anisakid nematodes in stranded cetaceans from Brazilian waters: An update on parasite’s hosts and geographical records. Parasitol. Res. 116, 3105–3116. https://doi.org/10.1007/s00436-017-5622-8 (2017).Article 
    PubMed 

    Google Scholar 
    Quiazon, K. M. A., Santos, M. D., Blatchley, D. D., Aguila, R. D. & Yoshinaga, T. Molecular and morphological identifications of Anisakis dujardin, 1845 (Nematoda: Anisakidae) from a rare deraniyagala’s beaked whale (Mesoplodon hotaula deraniyagala, 1963) and blainville’s beaked whale (Mesoplodon densirostris blainville, 1817) stranded. Philipp. J. Sci. 150, 823–835 (2021).
    Google Scholar 
    Bao, M. et al. Air-dried stockfish of Northeast Arctic cod do not carry viable anisakid nematodes. Food Cont. 116, 107322. https://doi.org/10.1016/j.foodcont.2020.107322 (2020).Article 
    CAS 

    Google Scholar 
    Liu, G. H. et al. Mitochondrial phylogenomics yields strongly supported hypotheses for ascaridomorph nematodes. Sci. Rep. https://doi.org/10.1038/srep39248 (2016).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Hrabar, J. et al. Phylogeny and pathology of anisakids parasitizing stranded California sea lions (Zalophus californianus) in Southern California. Front Mar. Sci. https://doi.org/10.3389/fmars.2021.636626 (2021).Article 

    Google Scholar  More

  • in

    Urban ecosystem drives genetic diversity in feral honey bee

    United Nations, Department of Economic and Social Affairs & Population Division. World Urbanization Prospects: The 2018 Revision (ST/ESA/SER.A/420). (United Nations, 2019).Wei, Y. D. & Ewing, R. Urban expansion, sprawl and inequality. Landsc. Urban Plan. 177, 259–265. https://doi.org/10.1016/j.landurbplan.2018.05.021 (2018).Article 

    Google Scholar 
    Ayers, A. C. & Rehan, S. M. Supporting bees in cities: How bees are influenced by local and landscape features. Insects 12 (2021).Grimm, N. B. et al. Global change and the ecology of cities. Science 319, 756–760. https://doi.org/10.1126/science.1150195 (2008).Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar 
    Fahrig, L. Effects of habitat fragmentation on biodiversity. Annu. Rev. Ecol. Evol. Syst. 34, 487–515. https://doi.org/10.1146/annurev.ecolsys.34.011802.132419 (2003).Article 

    Google Scholar 
    Shochat, E. et al. Invasion, competition, and biodiversity loss in urban ecosystems. Bioscience 60, 199–208. https://doi.org/10.1525/bio.2010.60.3.6 (2010).Article 

    Google Scholar 
    Sánchez-Bayo, F. & Wyckhuys, K. A. G. Worldwide decline of the entomofauna: A review of its drivers. Biol. Cons. 232, 8–27. https://doi.org/10.1016/j.biocon.2019.01.020 (2019).Article 

    Google Scholar 
    Seibold, S. et al. Arthropod decline in grasslands and forests is associated with landscape-level drivers. Nature 574, 671–674. https://doi.org/10.1038/s41586-019-1684-3 (2019).Article 
    ADS 
    CAS 
    PubMed 

    Google Scholar 
    Wagner, D. L. Insect declines in the anthropocene. Annu. Rev. Entomol. 65, 457–480. https://doi.org/10.1146/annurev-ento-011019-025151 (2020).Article 
    CAS 
    PubMed 

    Google Scholar 
    Brown, M. J. & Paxton, R. J. The conservation of bees: A global perspective. Apidologie 40, 410–416 (2009).
    Google Scholar 
    Hallmann, C. A. et al. More than 75 percent decline over 27 years in total flying insect biomass in protected areas. PLoS ONE 12, e0185809 (2017).PubMed 
    PubMed Central 

    Google Scholar 
    Kennedy, C. M. et al. A global quantitative synthesis of local and landscape effects on wild bee pollinators in agroecosystems. Ecol. Lett. 16, 584–599 (2013).PubMed 

    Google Scholar 
    Potts, S. G. et al. Summary for policymakers of the assessment report of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services on pollinators, pollination and food production. (2016).Winfree, R., Aguilar, R., Vázquez, D. P., LeBuhn, G. & Aizen, M. A. A meta-analysis of bees’ responses to anthropogenic disturbance. Ecology 90, 2068–2076 (2009).PubMed 

    Google Scholar 
    Millard, J. et al. Global effects of land-use intensity on local pollinator biodiversity. Nat. Commun. 12, 1–11 (2021).ADS 

    Google Scholar 
    Baldock, K. C. et al. A systems approach reveals urban pollinator hotspots and conservation opportunities. Nat. Ecol. Evolut. 3, 363–373 (2019).
    Google Scholar 
    Banaszak-Cibicka, W., Twerd, L., Fliszkiewicz, M., Giejdasz, K. & Langowska, A. City parks vs. natural areas—Is it possible to preserve a natural level of bee richness and abundance in a city park?. Urban Ecosyst. 21, 599–613 (2018).
    Google Scholar 
    Hall, D. M. et al. The city as a refuge for insect pollinators. Conserv. Biol. 31, 24–29 (2017).PubMed 

    Google Scholar 
    Theodorou, P. et al. Urban areas as hotspots for bees and pollination but not a panacea for all insects. Nat. Commun. 11, 1–13 (2020).
    Google Scholar 
    Wilson, C. J. & Jamieson, M. A. The effects of urbanization on bee communities depends on floral resource availability and bee functional traits. PLoS ONE 14, e0225852 (2019).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Samuelson, A. E., Schürch, R. & Leadbeater, E. Dancing bees evaluate central urban forage resources as superior to agricultural land. J. Appl. Ecol. 59, 79–88 (2022).
    Google Scholar 
    Fortel, L. et al. Decreasing abundance, increasing diversity and changing structure of the wild bee community (Hymenoptera: Anthophila) along an urbanization gradient. PLoS ONE 9, e104679 (2014).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Roffet-Salque, M. et al. Widespread exploitation of the honeybee by early Neolithic farmers. Nature 527, 226–230 (2015).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Crane, E. Recent research on the world history of beekeeping. Bee World 80, 174–186 (1999).
    Google Scholar 
    Dietemann, V., Pirk, C. W. W. & Crewe, R. Is there a need for conservation of honeybees in Africa?. Apidologie 40, 285–295 (2009).
    Google Scholar 
    Jaffe, R. et al. Estimating the density of honeybee colonies across their natural range to fill the gap in pollinator decline censuses. Conserv. Biol. 24, 583–593 (2010).PubMed 

    Google Scholar 
    Browne, K. A. et al. Investigation of free-living honey bee colonies in Ireland. J. Apic. Res. 60, 229–240. https://doi.org/10.1080/00218839.2020.1837530 (2021).Article 

    Google Scholar 
    Kohl, P. L. & Rutschmann, B. The neglected bee trees: European beech forests as a home for feral honey bee colonies. PeerJ 6, e4602 (2018).PubMed 
    PubMed Central 

    Google Scholar 
    Oleksa, A., Gawroński, R. & Tofilski, A. Rural avenues as a refuge for feral honey bee population. J. Insect Conserv. 17, 465–472 (2013).
    Google Scholar 
    Rutschmann, B., Kohl, P. L., Machado, A. & Steffan-Dewenter, I. Semi-natural habitats promote winter survival of wild-living honeybees in an agricultural landscape. Biol. Cons. 266, 109450 (2022).
    Google Scholar 
    Thompson, C. E., Biesmeijer, J. C., Allnutt, T. R., Pietravalle, S. & Budge, G. E. Parasite pressures on feral honey bees (Apis mellifera sp). PLoS ONE 9, e105164 (2014).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Bila Dubaić, J. et al. Unprecedented density and persistence of feral honey bees in urban environments of a large SE-European City (Belgrade, Serbia). Insects 12, 1127 (2021).PubMed 
    PubMed Central 

    Google Scholar 
    Alaux, C., Le Conte, Y. & Decourtye, A. Pitting wild bees against managed honey bees in their native range, a losing strategy for the conservation of honey bee biodiversity. Front. Ecol. Evol. 7, 60 (2019).
    Google Scholar 
    Requier, F. et al. The conservation of native honey bees is crucial. Trends Ecol. Evol. 34, 789–798 (2019).PubMed 

    Google Scholar 
    Mladenović, S. et al. Environment in Belgrade in 2018. (in Serbian: Kvalitet životne sredine u Beogradu u 2018. godini). (The City Administration, Secretariat for Environmental Protection, 2019).Statistical Office of the Republic of Serbia. https://data.stat.gov.rs/Home/Result/130202010207?languageCode=en-US.
    (“The Official Gazette of the Republic of Serbia”, Nos. 41/2009, 93/2012 and 14/2106 [In Serbian], 2009).Johnson, M. T. & Munshi-South, J. Evolution of life in urban environments. Science 358, eaam8327 (2017).PubMed 

    Google Scholar 
    Jara, L. et al. Stable genetic diversity despite parasite and pathogen spread in honey bee colonies. Sci. Nat. 102, 1–8 (2015).
    Google Scholar 
    Tanasković, M. et al. MtDNA analysis indicates human-induced temporal changes of serbian honey bees diversity. Insects 12, 767 (2021).PubMed 
    PubMed Central 

    Google Scholar 
    Wang, J. COANCESTRY: A program for simulating, estimating and analysing relatedness and inbreeding coefficients. Mol. Ecol. Resour. 11, 141–145. https://doi.org/10.1111/j.1755-0998.2010.02885.x (2011).Article 
    PubMed 

    Google Scholar 
    Wang, J. Triadic IBD coefficients and applications to estimating pairwise relatedness. Genet. Res. 89, 135–153. https://doi.org/10.1017/s0016672307008798 (2007).Article 
    CAS 
    PubMed 

    Google Scholar 
    Jacobson, S. Locally adapted, varroa resistant honey bees: ideas from several key studies. Am. Bee J. (2010).McNeely, J. A., Miller, K. R., Reid, W. V., Mettermeier, R. A. & Werner, T. B. Conserving the world’s biological diversity. (UICN, Morges (Suiza) WRI, Washington DC (EUA) CI, Washington DC (EUA) WWF …, 1990).Hoban, S. M. et al. Bringing genetic diversity to the forefront of conservation policy and management. Conserv. Genet. Resour. 5, 593–598 (2013).
    Google Scholar 
    Hohenlohe, P. A., Funk, W. C. & Rajora, O. P. Population genomics for wildlife conservation and management. Mol. Ecol. 30, 62–82 (2021).PubMed 

    Google Scholar 
    Shafer, A. B. et al. Genomics and the challenging translation into conservation practice. Trends Ecol. Evol. 30, 78–87 (2015).PubMed 

    Google Scholar 
    Mattila, H. R. & Seeley, T. D. Genetic diversity in honey bee colonies enhances productivity and fitness. Science 317, 362–364 (2007).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Oddie, M. A. & Dahle, B. Insights from Norway: Using natural adaptation to breed Varroa-resistant honey bees. Bee World 98, 38–43 (2021).
    Google Scholar 
    Oddie, M. A., Dahle, B. & Neumann, P. Norwegian honey bees surviving Varroa destructor mite infestations by means of natural selection. PeerJ 5, e3956 (2017).PubMed 
    PubMed Central 

    Google Scholar 
    Oldroyd, B. P. & Fewell, J. H. Genetic diversity promotes homeostasis in insect colonies. Trends Ecol. Evol. 22, 408–413 (2007).PubMed 

    Google Scholar 
    Tarpy, D. R. Genetic diversity within honeybee colonies prevents severe infections and promotes colony growth. Proc. R Soc. Lond. Series B Biol. Sci. 270, 99–103 (2003).
    Google Scholar 
    van Baalen, M. & Beekman, M. The costs and benefits of genetic heterogeneity in resistance against parasites in social insects. Am. Nat. 167, 568–577 (2006).PubMed 

    Google Scholar 
    Eckholm, B. J., Anderson, K. E., Weiss, M. & DeGrandi-Hoffman, G. Intracolonial genetic diversity in honeybee (Apis mellifera) colonies increases pollen foraging efficiency. Behav. Ecol. Sociobiol. 65, 1037–1044 (2011).
    Google Scholar 
    Graham, S., Myerscough, M., Jones, J. & Oldroyd, B. Modelling the role of intracolonial genetic diversity on regulation of brood temperature in honey bee (Apis mellifera L.) colonies. Insectes Soc. 53, 226–232 (2006).
    Google Scholar 
    Jones, J. C., Myerscough, M. R., Graham, S. & Oldroyd, B. P. Honey bee nest thermoregulation: Diversity promotes stability. Science 305, 402–404 (2004).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Tanasković, M. et al. Further evidence of population admixture in the Serbian honey bee population. Insects 13, 180 (2022).PubMed 
    PubMed Central 

    Google Scholar 
    Nedić, N. et al. Detecting population admixture in honey bees of Serbia. J. Apic. Res. 53, 303–313. https://doi.org/10.3896/IBRA.1.53.2.12 (2014).Article 

    Google Scholar 
    Nedić, N., Stanisavljević, L., Mladenović, M. & Stanisavljević, J. Molecular characterization of the honeybee Apis mellifera carnica in Serbia. Arch. Biol. Sci. 61, 587–598 (2009).
    Google Scholar 
    Kükrer, M., Kence, M. & Kence, A. Honey bee diversity is swayed by migratory beekeeping and trade despite conservation practices: Genetic evidence for the impact of anthropogenic factors on population structure. Front. Ecol. Evolut. 9 (2021).Bouga, M., Harizanis, P. C., Kilias, G. & Alahiotis, S. Genetic divergence and phylogenetic relationships of honey bee Apis mellifera (Hymenoptera: Apidae) populations from Greece and Cyprus using PCR–RFLP analysis of three mtDNA segments. Apidologie 36, 335–344 (2005).CAS 

    Google Scholar 
    Dall’Olio, R., Marino, A., Lodesani, M. & Moritz, R. F. Genetic characterization of Italian honeybees, Apis mellifera ligustica, based on microsatellite DNA polymorphisms. Apidologie 38, 207–217 (2007).CAS 

    Google Scholar 
    Neumann, P. & Blacquière, T. The Darwin cure for apiculture? Natural selection and managed honeybee health. Evol. Appl. 10, 226–230 (2017).PubMed 

    Google Scholar 
    Kulinčević, J., Rinderer, T., Mladjan, V. & Buco, S. Five years of bi-directional genetic selection for honey bees resistant and susceptible to Varroa jacobsoni. Apidologie 23, 443–452 (1992).
    Google Scholar 
    2011 Census of Population, Households and Dwellings in the Republic of Serbia: Comparative Overview of the Number of Population in 1948, 1953, 1961, 1971, 1981, 1991, 2002 and 2011. (Statistical Office of the Republic of Serbia, 2014).Techer, M. A. et al. Large-scale mitochondrial DNA analysis of native honey bee Apis mellifera populations reveals a new African subgroup private to the South West Indian Ocean islands. BMC Genet. 18, 1–21 (2017).
    Google Scholar 
    Garnery, L., Cornuet, J. M. & Solignac, M. Evolutionary history of the honey bee Apis mellifera inferred from mitochondrial DNA analysis. Mol. Ecol. 1, 145–154 (1992).CAS 
    PubMed 

    Google Scholar 
    Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Mol. Biol. Evol. 35, 1547 (2018).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Excoffier, L. & Lischer, H. E. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resources. 10, 564–567 (2010).
    Google Scholar 
    Kalinowski, S. T. hp-rare 1.0: A computer program for performing rarefaction on measures of allelic richness. Mol. Ecol. Notes. 5, 187–189 (2005).CAS 

    Google Scholar 
    Stoneking, M., Hedgecock, D., Higuchi, R. G., Vigilant, L. & Erlich, H. A. Population variation of human mtDNA control region sequences detected by enzymatic amplification and sequence-specific oligonucleotide probes. Am. J. Hum. Genet. 48, 370 (1991).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Hammer, Ø., Harper, D. A. & Ryan, P. D. PAST: Paleontological statistics software package for education and data analysis. Palaeontol. Electron. 4, 9 (2001).
    Google Scholar 
    Crozier, R. & Crozier, Y. The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization. Genetics 133, 97–117 (1993).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Falush, D., Stephens, M. & Pritchard, J. K. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164, 1567–1587. https://doi.org/10.1093/genetics/164.4.1567 (2003).Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Falush, D., Stephens, M. & Pritchard, J. K. Inference of population structure using multilocus genotype data: Dominant markers and null alleles. Mol. Ecol. Notes 7, 574–578 (2007).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Hubisz, M. J., Falush, D., Stephens, M. & Pritchard, J. K. Inferring weak population structure with the assistance of sample group information. Mol. Ecol. Resour. 9, 1322–1332. https://doi.org/10.1111/j.1755-0998.2009.02591.x (2009).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Pritchard, J. K., Stephens, M. & Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 155, 945–959 (2000).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Earl, D. A. & VonHoldt, B. M. STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4, 359–361 (2012).
    Google Scholar 
    Evanno, G., Regnaut, S. & Goudet, J. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol. Ecol. 14, 2611–2620 (2005).CAS 
    PubMed 

    Google Scholar 
    Jombart, T., Devillard, S. & Balloux, F. Discriminant analysis of principal components: A new method for the analysis of genetically structured populations. BMC Genet. 11, 94. https://doi.org/10.1186/1471-2156-11-94 (2010).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Ward, J. H. Hierarchical grouping to optimize an objective function. J. Am. Stat. Assoc. 58, 236–244. https://doi.org/10.1080/01621459.1963.10500845 (1963).Article 
    MathSciNet 

    Google Scholar 
    Wang, J. An estimator for pairwise relatedness using molecular markers. Genetics 160, 1203–1215. https://doi.org/10.1093/genetics/160.3.1203 (2002).Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Li, C. C., Weeks, D. E. & Chakravarti, A. Similarity of DNA fingerprints due to chance and relatedness. Hum. Hered. 43, 45–52. https://doi.org/10.1159/000154113 (1993).Article 
    CAS 
    PubMed 

    Google Scholar 
    Lynch, M. Estimation of relatedness by DNA fingerprinting. Mol. Biol. Evol. 5, 584–599. https://doi.org/10.1093/oxfordjournals.molbev.a040518 (1988).Article 
    CAS 
    PubMed 

    Google Scholar 
    Lynch, M. & Ritland, K. Estimation of pairwise relatedness with molecular markers. Genetics 152, 1753–1766. https://doi.org/10.1093/genetics/152.4.1753 (1999).Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Ritland, K. Estimators for pairwise relatedness and individual inbreeding coefficients. Genet. Res. 67, 175–185 (1996).
    Google Scholar 
    Queller, D. C. & Goodnight, K. F. Estimating relatedness using genetic markers. Evolution 43, 258–275. https://doi.org/10.1111/j.1558-5646.1989.tb04226.x (1989).Article 
    PubMed 

    Google Scholar 
    Milligan, B. G. Maximum-likelihood estimation of relatedness. Genetics 163, 1153–1167 (2003).PubMed 
    PubMed Central 

    Google Scholar 
    del Felipe, P. et al. Genetic diversity and structure of the commercially important native fish pacu (Piaractus mesopotamicus) from cultured and wild fish populations: Relevance for broodstock management. Aquacult. Int. 29, 289–305. https://doi.org/10.1007/s10499-020-00626-w (2021).Article 

    Google Scholar  More

  • in

    Effects of water extracts of Flaveria bidentis on the seed germination and seedling growth of three plants

    Liu, Q. R. Flaveria Juss. (Compositae), a newly naturalized genus in China. Acta Phytotaxonomica Sin. 43(2), 178–180 (2005).Article 

    Google Scholar 
    Ma, J. W. et al. Genetic diversity of the newly invasive weed Flaveria bidentis reveals consequences of its rapid range expansion in northern China. Weed Res. 51(4), 363–372 (2011).Article 

    Google Scholar 
    Chen, D. Q., HuangFu, C. H., Wang, N. N. & Yang, D. L. Effect of extracts of flaveria bidentis in different growth habitats on lolium perenne germination and seedling growth. Chin. J. Ecol. Agric. 20(5), 585–591 (2012).Article 

    Google Scholar 
    Gao, X. M. et al. An alert regarding biological in vasion by a new exotic plant, Flaveria bidentis, and strategies for its control. Biodiv. Sci. 12(2), 274–279 (2004).Article 

    Google Scholar 
    Ren, Y. P., Jiang, S., Gu, S., Wang, Y. Z. & Zheng, S. X. Advances in Flaveria bidentis (L.) Kuntze, a new exotic plant. J. Trop. Subtrop. Bot. 16(4), 390–396 (2008).CAS 

    Google Scholar 
    Chen, X., Li, X. C., Song, X. L., Qiang, S. & Dai, W. M. Observation on botanical characters and seed propagation characteristics, and ITS molecular identification of invasive plant Flaveria bidentis. J. Plant Res. Environ. 28(3), 100–107 (2019).
    Google Scholar 
    Rice, E. L. Allelopathy (Academic Press, 1984).
    Google Scholar 
    Kong, C. H. Problems needed attention on plant allelopathy research. Chin. J. Appl. Ecol. 9(3), 332–336 (1998).ADS 

    Google Scholar 
    Li, J. X. et al. Allelopathic effect of Artemisia argyi on the germination and growth of various weeds. Sci. Rep. 11(1), 4303 (2021).Article 
    ADS 
    CAS 

    Google Scholar 
    Keane, R. M. & Crawley, M. J. Exotic plant invasions and the enemy release hypothesis. Trends Ecol. Evol. 17, 164–170 (2002).Article 

    Google Scholar 
    Callaway, R. M. & Ridenour, W. M. Novel weapons: Invasive success and the evolution of increased competitive ability. Front. Ecol. Environ. 2(8), 436–443 (2004).Article 

    Google Scholar 
    Yang, Q. H., Ye, W. H., Liao, F. L. & Yin, X. J. Effects of allelochemicals on seed germination. Chin. J. Ecol. 24(12), 1459–1465 (2005).
    Google Scholar 
    Tang, J. Q. et al. A review on the effects of invasive plants on mycorrhizal fungi of native plants and their underlying mechanisms. Chin. J. Plant Ecol. 44(11), 1095–1112 (2020).Article 

    Google Scholar 
    Chen, J. H., Ma, H. Y., Chen, Y. & He, H. A study of chemicals released as volatiles or by rain leaching from Ipomoea cairica and their allelopathic effects. Acta Pratacult. Sin. 31(2), 88–100 (2022).
    Google Scholar 
    Bais, H. P., Vepachedu, R., Gilroy, S., Callaway, R. M. & Vivanco, J. M. Allelopathy and exotic plant invasion: From molecules and genes to species interactions. Science 301, 1377–1380 (2003).Article 
    ADS 
    CAS 

    Google Scholar 
    Hu, W. J., Liang, Q. J., He, Y. H. & Sun, J. F. Allelopathy of Solidago canadensis with different invasion degrees under nitrogen deposition. Guihaia 40(11), 1531–1539 (2020).
    Google Scholar 
    Lu, Z. G. et al. Study on the allelopathic effects of Flaveria bidentis on seed germination and seedling growth of two vegetables. Pratacult. Sci. 28(02), 251–254 (2011).
    Google Scholar 
    Huangfu, C. H., Zhang, T. R., Chen, D. Q., Wang, N. N. & Yang, D. L. Residual effects of invasive weed Yellowtop (Flaveria bidentis) on forage plants for ecological restoration. Allelopathy J. 27(1), 55–64 (2011).
    Google Scholar 
    Zhang, F. J., Guo, J. Y., Li, W. X. & Wan, F. H. Influence of coastal plain yellowtops (Flaveria bidentis) residues on growth of cotton seedlings and soil fertility. Arch. Agric. Soil Sci. 58(10), 1117–1128 (2012).Article 
    CAS 

    Google Scholar 
    Ji, Y. H., Han, Y. N., Wu, X. Y. & Li, M. Study on allelopathy in alien invasive Flaveria bidentis on cucumber. Northern Hortic. 2, 11–14 (2014).
    Google Scholar 
    Yang, X. et al. The extraction, isolation and identification of exudates from the roots of Flaveria bidentis. J. Integr. Agric. 13(1), 105–114 (2014).Article 
    CAS 

    Google Scholar 
    Yan, J. L., Su, Z. C., Tan, W. Z., Fu, W. D. & Zhang, G. L. On detection of allelopathic effect of four important crops by yellowtop weed (Flaveria bidentis). J. Southwest China Normal Univ. 39(1), 28–33 (2014).
    Google Scholar 
    Dar, B. A. et al. Allelopathic potential of argemone ochroleuca from different habitats on seed germination of native species and cultivated crops. Pak. J. Bot. 49(5), 1841–1848 (2017).CAS 

    Google Scholar 
    Ali, K. W., Shinwari, M. I. & Khan, S. Screening of 196 medicinal plant species leaf litter for allelopathic potential. Pak. J. Bot. 51(6), 2169–2177 (2019).Article 
    CAS 

    Google Scholar 
    Guo, Y. et al. Allelopathy of Eupatorium adenophorum extracts on seed germination and seedling growth of different strawberry varieties. Seed 40(6), 96–101 (2021).
    Google Scholar 
    Wang, C. et al. Effects of autotoxicity and allelopathy on seed germination and seedling growth in Medicago truncatula. Front. Plant Sci. 13, 908426 (2022).Article 

    Google Scholar 
    Zhao, X. M. et al. Allelopathic effects of leaf-stem litter water aqueous extracts of three plant species on tobacco seedlings. Acta Pratacult. Sin. 25(9), 37–45 (2016).ADS 

    Google Scholar 
    Shang, Y. et al. Preliminary study on mechanism of Flaveria bidentis and influence on the growth of nearby crops. J. Agric. Univ. Hebei 33(6), 91–94 (2010).CAS 

    Google Scholar 
    Mustafa, G., Ali, A., Ali, S., Barbanti, L. & Ahmad, M. Evaluation of dominant allelopathic weed through examining the allelopathic effects of four weeds on germination and seedling growth of six crops. Pak. J. Bot. 51(1), 269–278 (2019).Article 
    CAS 

    Google Scholar 
    Williamson, G. B. & Richardson, D. Bioassays for allelopathy: measuring treatment responses with independent controls. J. Chem. Ecol. 14(1), 181–187 (1988).Article 

    Google Scholar 
    Liu, Y. J., Meng, Z. J., Dang, X. H., Song, W. J. & Zhai, B. Allelopathic effects of Stellera chamaejasme on seed germination and seedling growth of alfalfa and two forage grasses. Acta Pratacult. Sin. 28(8), 130–138 (2019).
    Google Scholar  More

  • in

    Mapping tropical forest functional variation at satellite remote sensing resolutions depends on key traits

    We hypothesized that functionally distinct forest types can be mapped at moderate spatial resolutions, using a combination of canopy foliar traits and canopy structure information. Our analysis of LiDAR and imaging spectroscopy data at spatial resolutions ranging from 4 to 200 m (16 m2–40,000 m2), with an emphasis on the 30 m (900 m2) spaceborne hyperspectral spatial resolution, reveals that few remotely sensed canopy properties are needed to successfully identify ecologically distinct forest types at two diverse tropical forest sites in Malaysian Borneo. In testing our second hypothesis that mapped forest types exhibit distinct ecosystem function, we found that forest types identified using remotely sensed leaf P, LMA, Max H, and canopy cover at 20 m height (Cover20) closely align with forest types defined from field-based floristic surveys29,30,31,32,33 and inventory plot-based measurements of growth and mortality rates (Fig. 4b). Our approach, however, enables mapping of their entire spatial extent (Fig. 1) and reveals important structural and functional variation within areas characterized as a single forest type in previous studies (Fig. 3). Current and forthcoming satellite hyperspectral platforms, including PRISMA (30 m), CHIME (20–30 m), and SBG (30 m), have or will have comparable spectral resolution, higher temporal revisits, and much greater geographic coverage. The ability to conduct this type of analysis using remote sensing measurements at 30 m resolution suggests that our method can be applied to these emerging spaceborne imaging spectroscopy data to reveal important differences in structure and function across the world’s tropical forests.Nested functional forest types revealedTo test our first hypothesis, rather than making an a priori decision about the number of k-means clusters (k), we explored the capacity of remotely sensed data to reveal ecologically relevant variation in forest types. Baldeck and Asner took a similar unsupervised approach to estimating beta diversity in South Africa34. Because the choice of k directly influences analysis outcomes, careful selection of k is required. Different approaches for identifying the number of clusters, using the Gapk and Wk elbow metrics35, yielded varying optimal numbers of clusters for the Sepilok and Danum landscapes (Fig. 1, Supplementary Figs. 4 and 5). However, at both sites, a comparison of results based on different values of k revealed ecologically meaningful structural and functional differences and graduated transitions between forest types (Fig. 2, Supplementary Figs. 7 and 8), indicating that the exploration of traits that aggregate or separate forest types as k changes is a valuable exercise. Overlap between the remotely sensed forest type boundaries and inventory plots within distinct forest types indicate that the series of clustered forests align closely with forest types defined based on in situ data on species composition and ecosystem structure. In part, this type of analysis requires careful selection of the number of clusters. Additionally, however, we gained valuable insights via the exploration of varying numbers of clusters as it relates to biologically meaningful categorization of forest types. Extending this method to other parts of the tropics will require similar decision-making, which will either require user input, or the development of robust automated algorithms for selecting k.Forest types capture differences in ecosystem dynamicsWe further evaluated the canopy traits and structural attributes that were most critical for mapping distinct forest types, hypothesizing that mapped forest types exhibit distinct ecosystem function. Forest types revealed by the cluster analyses were distributed along the leaf economic spectrum, where the leaf economic spectrum characterizes a tradeoff in plant growth strategies36. LMA, which can covary strongly with leaf N and P, is a key indicator of plant growth strategies along the spectrum37. At the slow-return end of the leaf economics spectrum, plants in nutrient-poor conditions with low leaf nutrient concentrations invest in leaf structure and defense, expressed as high LMA, strategizing longer-lived, tougher leaves with slower decomposition rates. This strategy comes at the cost of slower growth. At the quick-return end of the spectrum, plants in nutrient-rich environments with higher leaf nutrient concentrations invest less in structure and defense, enabling faster growth and more rapid leaf turnover, i.e., shorter leaf lifespans. This quick-return growth strategy supports higher photosynthetic rates and more rapid carbon gain36.In this study, the principal components and clustering results yielded forest types that are indicative of community level differences associated with leaf economic spectrum differences. The nutrient rich sites (Danum1 and Danum2, Supplementary Fig. 8) show high canopy N and P and low LMA compared to the nutrient poor and acidic sites (Sandstone and Kerangas), which contributes to lower leaf photosynthetic capacity (Vcmax) and growth (Fig. 4b). Foliar N:P also increased with site fertility, confirming that tropical forests are primarily limited by phosphorus, and not nitrogen38,39, with large implications for carbon sequestration in these forests. Orthogonal differences in canopy structure and architecture between Danum forest types and Sepilok Sandstone and Alluvial forests could be indicative of ecosystem scale differences in the sensitivity of these forests to endogenous disturbance processes40.The significant differences in aboveground carbon stocks and growth and mortality rates between forest types further suggests strong differences in ecosystem dynamics. In general, growth rates varied inversely to aboveground carbon, and higher aboveground carbon corresponded to lower mortality rates. As an example, the Sepilok sandstone forests, which are largely comprised of slow-growing dipterocarp species29,33, had the highest median aboveground carbon (236 Mg C ha−1), with higher canopy P and N, and lower LMA. The taller canopy and low canopy leaf nutrient concentrations are consistent with the low growth and mortality rates found in the sandstone forest, indicating a slow-growth strategy yielding larger trees and higher aboveground carbon stocks. In contrast, alluvial forests exhibit high turnover with mortality and growth rates higher relative to Sandstone forests corresponding to lower aboveground carbon on average. Kerangas forests exhibited low aboveground carbon despite an intermediate plot-level growth rate, and mortality rates that were significantly lower than the Danum or alluvial forest types. Kerangas forests, which were characterized by the highest LMA, lowest foliar P and N (Fig. 2a), and the lowest plot-level aboveground carbon density (186 Mg C ha−1; Fig. 4a), are known to have higher stem densities, lower canopy heights, and long-lived leaves5,32,41, suggesting well-developed strategies for nutrient retention42. Interestingly, despite significantly different aboveground carbon and demography, the kerangas and sandstone forests did not differ in LAI or canopy architecture (P:H); although maximum height, Cover20, and Hpeak LAI were significantly higher in the sandstone forest, highlighting the need to account for differences beyond LAI when scaling processes from leaves to ecosystems.In addition, when three forest types were distinguished at Sepilok, the alluvial inventory plot had significantly higher aboveground carbon than the remote sensing-derived alluvial forest extent (Fig. 4a, p  More

  • in

    Citizen science plant observations encode global trait patterns

    Sakschewski, B. et al. Leaf and stem economics spectra drive diversity of functional plant traits in a dynamic global vegetation model. Glob. Change Biol. 21, 2711–2725 (2015).Article 

    Google Scholar 
    Berzaghi, F. et al. Towards a new generation of trait-flexible vegetation models. Trends Ecol. Evol. 35, 191–205 (2020).Article 
    PubMed 

    Google Scholar 
    Bruelheide, H. et al. Global trait–environment relationships of plant communities. Nat. Ecol. Evol. 2, 1906–1917 (2018).Article 
    PubMed 

    Google Scholar 
    Joswig, J. S. et al. Climatic and soil factors explain the two-dimensional spectrum of global plant trait variation. Nat. Ecol. Evol. 6, 36–50 (2021).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    van Bodegom, P. M., Douma, J. C. & Verheijen, L. M. A fully traits-based approach to modeling global vegetation distribution. Proc. Natl Acad. Sci. USA 111, 13733–13738 (2014).PubMed Central 

    Google Scholar 
    Moreno Martínez, A. et al. A methodology to derive global maps of leaf traits using remote sensing and climate data. Remote Sens. Environ. 218, 69–88 (2018).Article 

    Google Scholar 
    Pérez-Harguindeguy, N. et al. New handbook for standardized measurment of plant functional traits worldwide. Aust. J. Bot. 23, 167–234 (2013).Article 

    Google Scholar 
    Kattge, J. et al. TRY—a global database of plant traits. Glob. Change Biol. 17, 2905–2935 (2011).Article 

    Google Scholar 
    Kattge, J. et al. TRY plant trait database-enhanced coverage and open access. Glob. Change Biol. 26, 119–188 (2020).Article 

    Google Scholar 
    Jetz, W. et al. Monitoring plant functional diversity from space. Nat. Plants 2, 16024 (2016).Article 
    PubMed 

    Google Scholar 
    Butler, E. E. et al. Mapping local and global variability in plant trait distributions. Proc. Natl Acad. Sci. USA 114, E10937–E10946 (2017).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Boonman, C. C. et al. Assessing the reliability of predicted plant trait distributions at the global scale. Glob. Ecol. Biogeogr. 29, 1034–1051 (2020).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Madani, N. et al. Future global productivity will be affected by plant trait response to climate. Sci. Rep. 8, 2870 (2018).Vallicrosa, H. et al. Global distribution and drivers of forest biome foliar nitrogen to phosphorus ratios (N:P). Glob. Ecol. Biogeogr. 31, 861–871 (2022).Article 

    Google Scholar 
    Meyer, H. & Pebesma, E. Predicting into unknown space? Estimating the area of applicability of spatial prediction models. Methods Ecol. Evol. 12, 1620–1633 (2021).Article 

    Google Scholar 
    Schiller, C. et al. Deep learning and citizen science enable automated plant trait predictions from photographs. Sci. Rep. 11, 16395 (2021).Aguirre-Gutiérrez, J. et al. Pantropical modelling of canopy functional traits using sentinel-2 remote sensing data. Remote Sens. Environ. 252, 112–122 (2021).Article 

    Google Scholar 
    Homolova, L. et al. Review of optical-based remote sensing for plant trait mapping. Ecol. Complex. 15, 1–16 (2013).Article 

    Google Scholar 
    Van Cleemput, E. et al. The functional characterization of grass-and-shrubland ecosystems using hyperspectral remote sensing: trends, accuracy and moderating variables. Remote Sens. Environ. 209, 747–763 (2018).Article 

    Google Scholar 
    Kattenborn, T., Fassnacht, F. E. & Schmidtlein, S. Differentiating plant functional types using reflectance: which traits make the difference? Remote Sens. Ecol. Conserv. 5, 5–19 (2019).Article 

    Google Scholar 
    Hauser, L. T. et al. Explaining discrepancies between spectral and in-situ plant diversity in multispectral satellite earth observation. Remote Sens. Environ. 265, 112684 (2021).Article 

    Google Scholar 
    Wäldchen, J. & Mäder, P. Plant species identification using computer vision techniques: a systematic literature review. Arch. Comput. Methods Eng. 25, 507–543 (2018).Article 
    PubMed 

    Google Scholar 
    Jones, H. G. What plant is that? Tests of automated image recognition apps for plant identification on plants from the British flora. AoB Plants 12, plaa052 (2020).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Hampton, S. E. et al. Big data and the future of ecology. Front. Ecol. Environ. 11, 156–162 (2013).Article 

    Google Scholar 
    WÜest, R. O. et al. Macroecology in the age of big data—where to go from here? J. Biogeogr. 47, 1–12 (2020).Article 

    Google Scholar 
    Mäder, P. et al. The Flora Incognita app—interactive plant species identification. Methods Ecol. Evol. 12, 1335–1342 (2021).Article 

    Google Scholar 
    Di Cecco, G. J. et al. Observing the observers: how participants contribute data to iNaturalist and implications for biodiversity science. BioScience 71, 1179–1188 (2021).Article 

    Google Scholar 
    Mahecha, M. D. et al. Crowd-sourced plant occurrence data provide a reliable description of macroecological gradients. Ecography 44, 1131–1142 (2021).Article 

    Google Scholar 
    Botella, C. et al. Jointly estimating spatial sampling effort and habitat suitability for multiple species from opportunistic presence-only data. Methods Ecol. Evol. 12, 933–945 (2021).Article 

    Google Scholar 
    iNaturalist Research-Grade Observations (GBIF, accessed 5 January 2022); https://www.gbif.org/dataset/50c9509d-22c7-4a22-a47d-8c48425ef4a7Callaghan, C. T. et al. Three frontiers for the future of biodiversity research using citizen science data. BioScience 71, 55–63 (2020).
    Google Scholar 
    Dickinson, J. L., Zuckerberg, B. & Bonter, D. N. Citizen science as an ecological research tool: challenges and benefits. Ann. Rev. Ecol. Evol. Syst. 41, 149–172 (2010).Article 

    Google Scholar 
    Kosmala, M. et al. Assessing data quality in citizen science. Front. Ecol. Environ. 14, 551–560 (2016).Article 

    Google Scholar 
    Boakes, E. H. et al. Patterns of contribution to citizen science biodiversity projects increase understanding of volunteers’ recording behaviour. Sci. Rep. 6, 33051 (2016).Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Bowler, D.E. et al. Temporal trends in the spatial bias of species occurrence records. Ecography 2022, e06219 (2022). https://doi.org/10.1111/ecog.06219GBIF Occurrence Download (GBIF, 4 January 2022); https://doi.org/10.15468/dl.34tjreBruelheide, H. et al. sPlot—a new tool for global vegetation analyses. journal of vegetation science. J. Veg. Sci. 30, 161–186 (2019).Article 

    Google Scholar 
    Sabatini, F. et al. sPlotOpen—an environmentally balanced, open access, global dataset of vegetation plots. Glob. Ecol. Biogeogr. 30, 1740–1764 (2021).Article 

    Google Scholar 
    Whittaker, R.H. et al. Communities and Ecosystems (Macmillan/Collier Macmillan, 1970).Olson, D. M. et al. Terrestrial ecoregions of the world: a new map of life on Earth: a new global map of terrestrial ecoregions provides an innovative tool for conserving biodiversity. BioScience 51, 933–938 (2001).Article 

    Google Scholar 
    Joswig, J., Wirth, C. & Schuman, M. Climatic and soil factors explain the two-dimensional spectrum of global plant trait variation. Nat. Ecol. Evol. 6, 36–50 (2022).Article 
    PubMed 

    Google Scholar 
    Díaz, S. et al. The global spectrum of plant form and function. Nature 529, 167–171 (2016).Article 
    PubMed 

    Google Scholar 
    Ploton, P. et al. Spatial validation reveals poor predictive performance of large-scale ecological mapping models. Nat. Commun. 11, 4540 (2020).Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Meyer, H. & Pebesma, E. Spatial validation reveals poor predictive performance of large-scale ecological mapping models. Methods Ecol. Evol. 12, 1620–1633 (2021).Article 

    Google Scholar 
    Schrodt, F. et al. Bhpmf—a hierarchical Bayesian approach to gap filling and trait prediction for macroecology and functional biogeography. Glob. Ecol. Biogeogr. 24, 1510–1521 (2015).Article 

    Google Scholar 
    Kuppler, J. et al. Global gradients in intraspecific variation in vegetative and floral traits are partially associated with climate and species richness. Glob. Ecol. Biogeogr. 29, 992–1007 (2020).Article 

    Google Scholar 
    Scheiter, S., Langan, L. & Higgins, S. I. Next-generation dynamic global vegetation models: learning from community ecology. New Phytol. 198, 957–969 (2013).Article 
    PubMed 

    Google Scholar 
    Taubert, F. et al. Confronting an individual-based simulation model with empirical community patterns of grasslands. PLoS ONE 15, e0236546 (2020).Roger, E. & Klistorner, S. (2016) Bioblitzes help science communicators engage local communities in environmental research. J. Sci. Commun. https://doi.org/10.22323/2.15030206 (2016).Legendre, P. & Legendre, L. Numerical Ecology 3rd edn (Elsevier, 2012).Warton, D. I. et al. Smatr 3—an R package for estimation and inference about allometric lines. Methods Ecol Evol 3, 257–259 (2012).Article 

    Google Scholar 
    Wolf, S. et al. iNaturalist_traits: iNaturalist trait maps version 1 (January 5, 2022) Zenodo https://doi.org/10.5281/zenodo.6671891 (2022). More