Phage co-transport with hyphal-riding bacteria fuels bacterial invasion in a water-unsaturated microbial model system
1.Muok AR, Briegel A. Intermicrobial hitchhiking: how nonmotile microbes leverage communal motility. Trends Microbiol. 2021;29:542–50.CAS
PubMed
Google Scholar
2.Kohlmeier S, Smits THM, Ford RM, Keel C, Harms H, Wick LY. Taking the fungal highway: mobilization of pollutant-degrading bacteria by fungi. Environ Sci Technol. 2005;39:4640–6.CAS
PubMed
Google Scholar
3.Simon A, Bindschedler S, Job D, Wick LY, Filippidou S, Kooli WM, et al. Exploiting the fungal highway: development of a novel tool for the in situ isolation of bacteria migrating along fungal mycelium. FEMS Microbiol Ecol. 2015;91:fiv116.PubMed
Google Scholar
4.Deveau A, Bonito G, Uehling J, Paoletti M, Becker M, Bindschedler S, et al. Bacterial–fungal interactions: ecology, mechanisms and challenges. FEMS Microbiol Rev. 2018;42:335–52.CAS
PubMed
Google Scholar
5.Harms H, Schlosser D, Wick LY. Untapped potential: exploiting fungi in bioremediation of hazardous chemicals. Nat Rev Microbiol. 2011;9:177.CAS
PubMed
Google Scholar
6.Otten W, Hall D, Harris K, Ritz K, Young IM, Gilligan CA. Soil physics, fungal epidemiology and the spread of Rhizoctonia solani. N. Phytol. 2001;151:459–68.
Google Scholar
7.Sun B, Chen X, Zhang X, Liang A, Whalen JK, McLaughlin NB. Greater fungal and bacterial biomass in soil large macropores under no-tillage than mouldboard ploughing. Eur J Soil Biol. 2020;97:103155.CAS
Google Scholar
8.Otto S, Bruni EP, Harms H, Wick LY. Catch me if you can: dispersal and foraging of Bdellovibrio bacteriovorus 109J along mycelia. ISME J. 2017;11:386–93.PubMed
Google Scholar
9.Kjeldgaard B, Listian SA, Ramaswamhi V, Richter A, Kiesewalter HT, Kovács ÁT. Fungal hyphae colonization by Bacillus subtilis relies on biofilm matrix components. Biofilm. 2019;1:100007.PubMed
PubMed Central
Google Scholar
10.Narr A, Nawaz A, Wick LY, Harms H, Chatzinotas A. Soil viral communities vary temporally and along a land use transect as revealed by virus-like particle counting and a modified community fingerprinting approach (fRAPD). Front Microbiol. 2017;8:1975.PubMed
PubMed Central
Google Scholar
11.Rosner A, Gutstein R. Adsorption of actinophage Pal 6 to developing mycelium of Streptomyces albus. Can J Microbiol. 1981;27:254–7.CAS
PubMed
Google Scholar
12.Ghanem N, E. Stanley C, Harms H, Chatzinotas A,Y, Wick L. Mycelial effects on phage retention during transport in a microfluidic platform. Environ Sci Technol. 2019;53:11755–63.CAS
PubMed
Google Scholar
13.Dennehy JJ. What ecologists can tell virologists. Annu Rev Microbiol. 2014;68:117–35.CAS
PubMed
Google Scholar
14.Hurst CJ, Gerba CP, Cech I. Effects of environmental variables and soil characteristics on virus survival in soil. Appl Environ Microbiol. 1980;40:1067–79.CAS
PubMed
PubMed Central
Google Scholar
15.Yeager JG, Brien RT. Enterovirus inactivation in soil. Appl Environ Microbiol. 1979;38:694–701.CAS
PubMed
PubMed Central
Google Scholar
16.Schwartz DA, Lindell D. Genetic hurdles limit the arms race between Prochlorococcus and the T7-like podoviruses infecting them. ISME J. 2017;11:1836–51.PubMed
PubMed Central
Google Scholar
17.Shan J, Ramachandran A, Thanki AM, Vukusic FBI, Barylski J, Clokie MRJ. Bacteriophages are more virulent to bacteria with human cells than they are in bacterial culture; insights from HT-29 cells. Sci Rep. 2018;8:5091.PubMed
PubMed Central
Google Scholar
18.Chaudhry W, Lee E, Worthy A, Weiss Z, Grabowicz M, Vega NM, et al. Mucoidy, a general mechanism for maintaining lytic phage in populations of bacteria. FEMS Microbiology Ecology. 2020;96:fiaa162.19.Yu Z, Schwarz C, Zhu L, Chen L, Shen Y, Yu P. Hitchhiking behavior in bacteriophages facilitates phage infection and enhances carrier bacteria colonization. Environ Sci Technol. 2020;55:2462–72.PubMed
Google Scholar
20.Tarafder AK, von Kügelgen A, Mellul AJ, Schulze U, Aarts DGAL, Bharat TAM. Phage liquid crystalline droplets form occlusive sheaths that encapsulate and protect infectious rod-shaped bacteria. Proc Natl Acad Sci. 2020;117:4724–31.CAS
PubMed
PubMed Central
Google Scholar
21.Callaway RM, Ridenour WM. Novel weapons: invasive success and the evolution of increased competitive ability. Front Ecol Environ. 2004;2:436–43.
Google Scholar
22.Granato ET, Meiller-Legrand TA, Foster KR. The evolution and ecology of bacterial warfare. Curr Biol. 2019;29:521–37.
Google Scholar
23.Gama JA, Reis AM, Domingues I, Mendes-Soares H, Matos AM, Dionisio F. Temperate Bacterial viruses as double-edged swords in bacterial warfare. PLoS One. 2013;8:e59043.CAS
PubMed
PubMed Central
Google Scholar
24.Dragoš A, Andersen AJC, Lozano-Andrade CN, Kempen PJ, Kovács ÁT, Strube ML. Phages carry interbacterial weapons encoded by biosynthetic gene clusters. Curr Biol. 2021;31:3479–89.PubMed
Google Scholar
25.Pyšek P, Bacher S, Kühn I, Novoa A, Catford JA, Hulme PE, et al. Macroecological framework for invasive aliens (MAFIA): disentangling large-scale context dependence in biological invasions. NeoBiota. 2020;62:407–61.
Google Scholar
26.Blackburn TM, Pyšek P, Bacher S, Carlton JT, Duncan RP, Jarošík V, et al. A proposed unified framework for biological invasions. Trends Ecol Evol. 2011;26:333–9.PubMed
Google Scholar
27.Richardson DM, Pyšek P. Plant invasions: merging the concepts of species invasiveness and community invasibility. Prog Phys Geogr Earth Environ. 2006;30:409–31.
Google Scholar
28.Williamson M. Explaining and predicting the success of invading species at different stages of invasion. Biol Invasions. 2006;8:1561–8.
Google Scholar
29.Demerec M, Adelberg EA, Clark AJ, Hartman PE. A proposal for a uniform nomenclature in bacterial genetics. Genetics 1966;54:61–76.CAS
PubMed
PubMed Central
Google Scholar
30.Dechesne A, Wang G, Gülez G, Or D, Smets BF. Hydration-controlled bacterial motility and dispersal on surfaces. Proc Natl Acad Sci. 2010;107:14369–72.CAS
PubMed
PubMed Central
Google Scholar
31.Maurhofer M, Keel C, Schnider U, Voisard C, Haas D, Defao G. Influence of enhanced antibiotic production in Pseudomanas fluorescens strain CHA0 on its disease suppressive capacity. Phytopathol. 1992;82:190–5.CAS
Google Scholar
32.Schamfuß S, Neu TR, van der Meer JR, Tecon R, Harms H, Wick LY. Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria. Environ Sci Technol. 2013;47:6908–15.PubMed
Google Scholar
33.Bichet MC, Chin WH, Richards W, Lin Y-W, Avellaneda-Franco L, Hernandez CA, et al. Bacteriophage uptake by mammalian cell layers represents a potential sink that may impact phage therapy. iScience. 2021;24:102287.CAS
PubMed
PubMed Central
Google Scholar
34.Lu F, Wu S-H, Hung Y, Mou C-Y. Size effect on cell uptake in well-suspended, uniform mesoporous silica nanoparticles. Small. 2009;5:1408–13.CAS
PubMed
Google Scholar
35.Fortier L-C, Moineau S Phage production and maintenance of stocks, including expected stock Lifetimes. In: Clokie MRJ, Kropinski AM, editors. Bacteriophages: Methods and Protocols, Volume 1: Isolation, Characterization, and Interactions. Totowa: Humana Press; 2009. p. 203–19.36.Mazzocco A, Waddell TE, Lingohr E, Johnson RP Enumeration of Bacteriophages Using the Small Drop Plaque Assay System In: Clokie MRJ, Kropinski AM, editors. Bacteriophages: Methods and Protocols, Volume 1: Isolation, Characterization, and Interactions Totowa: Humana Press; 2009. p. 81–85.37.Kropinski AM, Mazzocco A, Waddell TE, Lingohr E, Johnson RP Enumeration of Bacteriophages by Double Agar Overlay Plaque Assay In: Clokie MRJ, Kropinski AM, editors. Bacteriophages: Methods and Protocols, Volume 1: Isolation, Characterization, and Interactions. Totowa: Humana Press; 2009. p. 69–76.38.Thanki AM, Taylor-Joyce G, Dowah A, Yakubu Nale J, Malik D, Rebecca Jane Clokie M. Unravelling the Links between Phage Adsorption and Successful Infection in Clostridium difficile. Viruses. 2018;10:441.39.Nair RR, Fiegna F, Velicer GJ. Indirect evolution of social fitness inequalities and facultative social exploitation. Proc R Soc B Biol Sci. 2018;285:20180054.
Google Scholar
40.Postma M, Goedhart J. PlotsOfData—A web app for visualizing data together with their summaries. PLOS Biol. 2019;17:e3000202.CAS
PubMed
PubMed Central
Google Scholar
41.Wood M. Statistical inference using bootstrap confidence intervals. Significance. 2004;1:180–2.
Google Scholar
42.Cumming G, Finch S. Inference by eye: confidence interval and how to read pictures of data. Am Psychol. 2005;60:170–80.PubMed
Google Scholar
43.Frada MJ, Schatz D, Farstey V, Ossolinski JE, Sabanay H, Ben-Dor S, et al. Zooplankton may serve as transmission vectors for viruses infecting algal blooms in the ocean. Curr Biol. 2014;24:2592–7.CAS
PubMed
Google Scholar
44.Frada MJ, Vardi A. Algal viruses hitchhiking on zooplankton across phytoplankton blooms. Commun Integr Biol. 2015;8:e1029210.PubMed
PubMed Central
Google Scholar
45.Totsche KU, Kögel-Knabner I. Mobile organic sorbent affected contaminant transport in soil: numerical case studies for enhanced and reduced mobility. Vadose Zo J. 2004;3:352–67.CAS
Google Scholar
46.Reche I, D’Orta G, Mladenov N, Winget DM, Suttle CA. Deposition rates of viruses and bacteria above the atmospheric boundary layer. ISME J. 2018;12:1154–62.CAS
PubMed
PubMed Central
Google Scholar
47.Lehmann K, Lehmann R, Totsche KU. Event-driven dynamics of the total mobile inventory in undisturbed soil account for significant fluxes of particulate organic carbon. Sci Total Environ. 2021;756:143774.CAS
PubMed
Google Scholar
48.Storms ZJ, Sauvageau D. Modeling tailed bacteriophage adsorption: insight into mechanisms. Virology. 2015;485:355–62.CAS
PubMed
Google Scholar
49.Shan Y, Harms H, Wick LY. Electric field effects on bacterial deposition and transport in porous media. Environ Sci Technol. 2018;52:14294–301.CAS
PubMed
Google Scholar
50.Junier P, Cailleau G, Palmieri I, Vallotton C, Trautschold OC, Junier T, et al. Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi. FEMS Microbiol Ecol. 2021;97:fiab003.CAS
PubMed
PubMed Central
Google Scholar
51.Furuno S, Remer R, Chatzinotas A, Harms H, Wick LY. Use of mycelia as paths for the isolation of contaminant-degrading bacteria from soil. Micro Biotechnol. 2012;5:142–8.CAS
Google Scholar
52.Jiang F, Zhang L, Zhou J, George TS, Feng G. Arbuscular mycorrhizal fungi enhance mineralisation of organic phosphorus by carrying bacteria along their extraradical hyphae. N. Phytol. 2021;230:304–15.CAS
Google Scholar
53.Jansa J, Hodge A. Swimming, gliding, or hyphal riding? On microbial migration along the arbuscular mycorrhizal hyphal highway and functional consequences thereof. N. Phytol. 2021;230:14–16.
Google Scholar
54.Zhang Y, Kastman EK, Guasto JS, Wolfe BE. Fungal networks shape dynamics of bacterial dispersal and community assembly in cheese rind microbiomes. Nat Commun. 2018;9:336.PubMed
PubMed Central
Google Scholar
55.Ping D, Wang T, Fraebel DT, Maslov S, Sneppen K, Kuehn S. Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations. ISME J 2020;14:2007–18.PubMed
PubMed Central
Google Scholar
56.Testa S, Berger S, Piccardi P, Oechslin F, Resch G, Mitri S. Spatial structure affects phage efficacy in infecting dual-strain biofilms of Pseudomonas aeruginosa. Commun Biol. 2019;2:405.PubMed
PubMed Central
Google Scholar
57.May T, Tsuruta K, Okabe S. Exposure of conjugative plasmid carrying Escherichia coli biofilms to male-specific bacteriophages. ISME J. 2011;5:771–5.CAS
PubMed
Google Scholar
58.Abedon ST. Phage “delay” towards enhancing bacterial escape from biofilms: a more comprehensive way of viewing resistance to bacteriophages. AIMS Microbiol. 2017;3:186.PubMed
PubMed Central
Google Scholar
59.Adams MH Bacteriophages (Interscience Publishers, Inc., New York – London, 1959)60.Schrader HS, Schrader JO, Walker JJ, Bruggeman NB, Vanderloop JM, Shaffer JJ, et al. Effects of host starvation on bacteriophage dynamics. Bact Oligotrophic Environ Starvation-Survival Lifestyle. 1997; 368-85.61.Schrader HS, Schrader JO, Walker JJ, Wolf TA, Nickerson KW, Kokjohn TA. Bacteriophage infection and multiplication occur in Pseudomonas aeruginosa starved for 5 years. Can J Microbiol. 1997;43:1157–63.CAS
PubMed
Google Scholar
62.Łoś M, Golec P, Łoś JM, Węglewska-Jurkiewicz A, Czyż A, Węgrzyn A, et al. Effective inhibition of lytic development of bacteriophages λ, P1 and T4 by starvation of their host, Escherichia coli. BMC Biotechnol. 2007;7:13.PubMed
PubMed Central
Google Scholar
63.Bryan D, El-Shibiny A, Hobbs Z, Porter J, Kutter EM. Bacteriophage T4 infection of stationary phase E. coli: life after log from a phage perspective. Front Microbiol. 2016;7:1391.PubMed
PubMed Central
Google Scholar
64.Yin J. A quantifiable phenotype of viral propagation. Biochem Biophys Res Commun. 1991;174:1009–14.CAS
PubMed
Google Scholar
65.Chatterjee A, Willett JLE, Dunny GM, Duerkop BA. Phage infection and sub-lethal antibiotic exposure mediate Enterococcus faecalis type VII secretion system dependent inhibition of bystander bacteria. PLOS Genet. 2021;17:e1009204.CAS
PubMed
PubMed Central
Google Scholar
66.Berthold T, Centler F, Hübschmann T, Remer R, Thullner M, Harms H, et al. Mycelia as a focal point for horizontal gene transfer among soil bacteria. Sci Rep. 2016;6:36390.CAS
PubMed
PubMed Central
Google Scholar
67.Lee KL, Hubbard LC, Hern S, Yildiz I, Gratzl M, Steinmetz NF. Shape matters: the diffusion rates of TMV rods and CPMV icosahedrons in a spheroid model of extracellular matrix are distinct. Biomater Sci. 2013;1. https://doi.org/10.1039/C3BM00191A.68.Hudson P, Greenman J. Competition mediated by parasites: biological and theoretical progress. Trends Ecol Evol. 1998;13:387–90.CAS
PubMed
Google Scholar
69.Sax DF, Stachowicz JJ, Brown JH, Bruno JF, Dawson MN, Gaines SD, et al. Ecological and evolutionary insights from species invasions. Trends Ecol Evol. 2007;22:465–71.PubMed
Google Scholar
70.Wagner PL, Waldor MK. Bacteriophage control of bacterial virulence. Infect Immun. 2020;70:3985–93.
Google Scholar
71.Chantrey J, Dale TD, Read JM, White S, Whitfield F, Jones D, et al. European red squirrel population dynamics driven by squirrelpox at a gray squirrel invasion interface. Ecol Evol. 2014;4:3788–99.PubMed
PubMed Central
Google Scholar
72.Essl F, Bacher S, Genovesi P, Hulme PE, Jeschke JM, Katsanevakis S, et al. Which taxa are alien? Criteria, applications, and uncertainties. Bioscience 2018;68:496–509.
Google Scholar
73.Seebens H, Gastner MT, Blasius B. The risk of marine bioinvasion caused by global shipping. Ecol Lett. 2013;16:782–90.CAS
PubMed
Google Scholar
74.Seebens H, Essl F, Blasius B. The intermediate distance hypothesis of biological invasions. Ecol Lett. 2017;20:158–65.PubMed
Google Scholar
75.Hulme PE, Bacher S, Kenis M, Klotz S, Kühn I, Minchin D, et al. Grasping at the routes of biological invasions: a framework for integrating pathways into policy. J Appl Ecol. 2008;45:403–14.
Google Scholar
76.Liebhold AM, Brockerhoff EG, Garrett LJ, Parke JL, Britton KO. Live plant imports: the major pathway for forest insect and pathogen invasions of the US. Front Ecol Environ. 2012;10:135–43.
Google Scholar More