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    Extinction of threatened vertebrates will lead to idiosyncratic changes in functional diversity across the world

    Spatial databaseWe collected species occurrences from the most accurate and available source of data for each taxonomic group. For mammals, birds, reptiles and amphibians, we used the IUCN spatial database to assign realm identity for each species15. By doing this, we assigned a realm for 5489 mammal species, 10,787 bird species, 5489 reptile species and 5833 amphibian species. Since IUCN spatial database does not cover all species, we completed our database with two additional sources of species occurrences: (1) the WWF WildFinder species database23, except for mammals where we used the latest version of the species distribution provided by ref. 24. If (1) was not available, we used (2) the global biodiversity information facility (GBIF). Using WWF WildFinder, we assigned a realm for 1634 bird species, 7378 reptile species and 2006 amphibian species. 437 mammal species were assigned using ref. 24. From GBIF, we downloaded all the records belonging to the four classes of animals (Mammals50, Aves51, Reptiles52 and Amphibians53). Before using the spatial data, we cleaned the dataset following a cleaning procedure that was similar to but more conservative than other currently available methods (e.g. CoordinatesCleaner, BDCleaner54). First, records were screened, and only those with (1) coordinates; (2) a taxonomic rank of “species” were kept. From this list, we filtered out the records with clearly false locality coordinates (e.g. latitude equal to longitude, both latitude and longitude equal to 0, and longitude/latitude outside the possible range (i.e. −180; 180 for longitude and −90; 90 for latitude)). Those are the most common errors encountered with GBIF occurrence data55. In addition, we removed the records from living specimens (i.e. from zoos, botanical gardens), conserved specimens (i.e. museums), and unknown sources. We also excluded the species with less than 50 records within each realm as a low number of records can be due to misidentifications, which might have strong effects on our analyses. We finally refined the dataset by overlaying the occurrences within the six biogeographic realms (see below) and dropping the species that fall outside of the polygons. This spatial overlay process was conducted using the ‘sp’ library56 in R. The number of species for which realm was assigned using GBIF was 1 ( More

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    2000 years of agriculture in the Atacama desert lead to changes in the distribution and concentration of iron in maize

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