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    A cautionary tale about using the apparent carbon accumulation rate (aCAR) obtained from peat cores

    Containing over 500 billion tonnes (Pg) of carbon (C)1,2,3, peatlands are an important part of the global C cycle, and there is considerable interest in how C accumulation in these systems has varied in the past and how it might respond to future changes in climate and land management4,5,6,7,8. Carbon accumulates in a peatland because more plant material is added to it than is lost via decay. Although rapid in the near surface (often called the acrotelm), decay rates in waterlogged deeper peat (the catotelm) are much lower, allowing peat to build up. However, the reverse can happen at times; more material can be lost than is added, resulting in a decrease in a peatland’s C store and a net release of C to the atmosphere (e.g.6,9).To reconstruct the C accumulation history of a peatland10, scientists calculate what is often called ‘aCAR’11: the apparent Carbon Accumulation Rate. To estimate aCAR, it is necessary first to establish the age of the peat down a peat core; this is done by dating samples of peat from a number of depths and fitting a curve through the data12,13. The C content of contiguous or regularly-spaced layers of peat down the core also needs to be measured. aCAR is then the amount of C (per unit area) in a layer divided by the difference in age between the top and bottom of the layer. aCAR is usually plotted against time to infer how rates of C accumulation have varied during a peatland’s developmental history. Although aCAR is a widely-used metric, problems with its interpretation have been discussed over many years (e.g.10,11,14,15,16,17,18,19).aCAR has a number of problems as an indicator of the net C accumulation rate of a peatland. First, because it is a measure of the amount of C found within a peat layer at the time of coring it is dependent on the overall age of the layer; this is because decay of the layer will continue as the layer gets older—the layer loses mass and C over time since its formation. For example, the aCAR for peat that is 3,000 years old may be greater than for peat in the same profile that is 4,000 years old. However, this difference in aCAR does not mean the peatland was necessarily accumulating C more rapidly 3,000 years ago than it was 4,000 years ago: when the layer of 4,000-year old peat was only 3,000 years old, its aCAR may have been the same as that of the layer of peat that is currently 3,000 years old. This ‘ageing’ problem makes it impossible to use aCAR to determine the true net rate of C accumulation of a peatland over time. A second problem is that aCAR does not account for what else may be happening to other layers in the peat profile10,11. When a new peat layer is being formed at the peatland surface, new C is being added to the profile, but a greater amount of older C may be being lost via decay from the rest of the peat profile below the new layer. Therefore, despite new C being added, the peatland as a whole may be losing C. This net loss of C is not part of the calculation of aCAR, which is a measure solely of how much C has been added to a peatland over a period of time (notwithstanding ongoing losses from the layer because of decay). Therefore, aCAR can only ever give positive values of C accumulation within the time period spanning the layer of interest11.Further problems in the interpretation of aCAR arise when it is calculated for near-surface peat (i.e., peat from recent decades), and these problems have been termed the ‘acrotelm effect’. We recently explained10 why aCAR from near-surface peat cannot be reliably compared to the long-term rate of C accumulation obtained from a deeper layer within a peat core, which may be several centuries, or more, old. Greater values of aCAR found in the near surface of a peatland are an artefact that arises because recently-added plant litter has decomposed much less than older, deeper, peat. The artefact is another example of the peat-ageing problem noted above, but it is exacerbated in the acrotelm because of the higher decay rates in this aerated part of the peat profile. As a result, many peatland scientists choose to ignore aCAR in the upper parts of the peat profile; they are aware of the problem and do not use or attempt to interpret the increase in aCAR in progressively younger peat (e.g.20). However, misinterpretation of the effect is common in the recent literature (e.g.21,22,23,24). These studies also mistakenly assume that aCAR, when calculated for the acrotelm as a whole (by treating the acrotelm as a single layer), gives a multi-decadal average net rate of peat C accumulation for the entire peat profile, when in fact it merely describes the C content of the acrotelm. This erroneous assumption is perhaps most prominently made by Rydin and Jeglum25, who suggest that:
    “… it may be useful to have a measure of peat accumulation over the last few decades …This measure is the recent rate of carbon accumulation (RERCA), which is obtained from the bulk density [which gives the mass of peat and C] down to a dated level not far from the surface. Given the recent developments in precise and accurate dating of young peat…, this is now quite possible” [text in brackets added].
    As defined by Rydin and Jeglum25 RERCA is simply aCAR calculated for a single layer of peat at the peatland surface, and, as noted above, this layer may comprise all of the acrotelm. Rydin and Jeglum25 note that RERCA may be used instead of direct measurement of the C fluxes to and from a peatland (see below); in doing so, it is clear they assume RERCA is a measure of the C budget of the peatland in its entirety.Data from peat cores are, of course, essential for understanding peatlands’ C accumulation histories, but it is their use to calculate aCAR or RERCA that we wish to challenge. In discussions with peatland scientists and policy makers we have realised that the problems with aCAR and RERCA are still not fully appreciated; in particular there is confusion over why RERCA cannot be used to give an average net C accumulation rate for a peatland as a whole over recent decades (e.g.26). To address these misunderstandings, and to expand on the explanations given in10, we present and discuss here the results from a simple numerical model based on Clymo’s14 work and a more detailed computer model of peatland development. The simple peatland model is used to illustrate, from first principles, how the acrotelm effect arises. We show how an increase in aCAR in the uppermost part of the peat profile arises even when: (1) actual rates of net C accumulation for the peatland as a whole decline over time, (2) net C accumulation rates for the peatland are steady (constant) over time, and (3) net C accumulation rates are negative (there is a net loss of C from the peatland as a whole). We also show why, except in one unusual case, RERCA is not equal to the net rate of C accumulation of the peatland. Specifically, we show how the method used to calculate RERCA is based on a misapplication of the mass balance equation. In the second part of the paper, we use the DigiBog peatland development model10,27 to show how the mismatch between aCAR and actual rates of net C accumulation, explained by our simple peatland model, applies over millennial timescales. DigiBog’s outputs enable us to calculate aCAR and actual (‘true’) rates of net C accumulation for the thousands of years over which our simulated peatlands develop. Because climate over such timescales is rarely constant, we also explore the effect of changes to temperature and net rainfall (precipitation minus evapotranspiration) on net C accumulation and aCAR.In the remainder of the paper we use a third acronym to describe the rate of C accumulation in peatlands: NCB or net carbon balance11,28. aCAR and RERCA (which, as noted above, is a special case of aCAR) are both calculated for layers of peat. NCB, in contrast, includes all C additions to, and all C losses from, a peatland and may be thought of as the true rate of net C accumulation for the whole peatland (or the whole peat column) at a particular time. NCB may be obtained directly by measuring atmosphere-peatland C exchanges using flux towers and by measuring C losses in water discharging from a peatland (e.g.29,30).Conceptualising the acrotelm effectTo illustrate how the acrotelm effect arises we first use a very simple numerical model where litter produced by peatland plants is added to the peatland surface as cohorts or layers. The rate of litter production has dimensions of mass (addition) per unit area of peatland per time (M L−2 T−1). Past cohorts (M L−2) decay at a specified proportionate rate (proportion per time—T−1) in accordance with Clymo14. We consider three scenarios. In Scenario 1, which we term the ‘establishment phase’ of a peatland, new peat forms on, for example, a bare mineral surface. This phase is illustrated for a column of peat in Fig. 1. In the model shown in the figure, the peatland grows over a period of five notional timesteps (Δt1–Δt5). Throughout this period, litter production is constant at a rate of 1.0 per timestep (arbitrary mass units per unit area), while decay occurs at a fixed proportionate rate of 0.33 per timestep. The peat column is shown for each timestep and its height is proportional to the total mass of peat (M L−2) (Fig. 1). During Δt1, 1.0 mass unit of litter (per unit area) is added and no peat is lost to decay. Therefore, the net mass accumulation rate is 1.0. During Δt2 1.0 mass unit of new litter is again added, but 0.33 mass units of old litter or peat are lost from the pre-existing cohort (formed during Δt1), so that its mass is reduced to 0.67. Therefore, by the end of Δt2 the peatland contains 1.67 mass units compared to 1.0 at the end of Δt1. In other words, the net gain or accumulation rate has reduced to 0.67 in Δt2 from 1.0 in Δt1. This pattern continues and the peatland continues to grow, but at a decreasing rate, during the remaining timesteps (Δt3–Δt5) as shown in the figure. The actual C balance (NCB) of the peatland is also shown in the figure, where it is assumed that C comprises half of the mass of the litter/peat (see below).Figure 1Scenario 1 showing the establishment phase of a peatland. Changes to a single column of peat of unit area are shown for five separate timesteps (Δt). Newly-added litter/peat is shown in pale green. Older peat is shown in pale brown/orange. The numbers in each layer of peat show the mass of peat and, in brackets, the mass of carbon, both per unit area (arbitrary units). NCB denotes the actual or real rate of net C accumulation and is given by the gains of C (in new litter) minus the loss of C from the decay of the older peat cohorts for each Δt, as shown in the boxes above the columns. The arrows below the boxes represent gains (down-pointing) and losses (up-pointing) of C. aCAR is calculated for each cohort or layer at Δt5. The graph shows NCB and aCAR for each Δt. In Scenario 1, the water table always resides at the base of the peat column; there is no catotelm, and all of the peat is aerated—it is acrotelm peat.Full size imageA scientist wishing to know rates of net peat and C accumulation (NCB), and how these change over time, during the establishment phase (i.e., between Δt1 and Δt5), might measure, at each time step, C fluxes to and from the peatland directly (see “Introduction” and reference to29,30). Alternatively, they could core the whole peat profile at each of the time steps and measure the peatland’s total C content on each occasion and see how it changes over time. In practice, neither approach may be practicable because of the time span involved. Most research projects last a few years (typically three to five years), and even long-term monitoring programmes rarely exceed one or two decades. Therefore, if Δt1–Δt5 spanned more than a few decades, the period would be much too long for most studies. Because of these practical difficulties, an alternative used by some peatland scientists is to take a peat core from the peatland in its current state (Δt5 in Fig. 1) and to use the core to reconstruct the apparent C accumulation history of the peatland. This reconstruction is done by dating the peat in the profile and by measuring the mass of layers of peat for which the ages of the upper and lower boundaries of the layers are known (i.e., the duration of the interval represented by the layer is known). For the simple case in Fig. 1, we may assume that the layers for which aCAR is calculated are coincident with the cohorts of litter added every timestep (Δt).If we assume that the proportion of the peat mass that is C is 50%17, NCB is simply half the value of the mass accumulation rate discussed above. Therefore, for Δt1, 0.5 mass units of C are added and none are lost. For Δt2, 0.5 mass units of C are again added, but 0.17 C units are lost from the existing layer formed during Δt1 (loss being the mass in the layer times the decay rate: 0.5 × 0.33 = 0.17), giving a net rate of C accumulation of 0.34 (Fig. 1). As noted above, the peatland continues to gain mass and C but the rate of gain decreases with time. This decrease in rate of net peat and C accumulation is shown by the grey dashed line connecting the top of peat columns in Fig. 1 and is what would be indicated by direct measurement. In contrast, aCAR erroneously suggests that the rate of growth is increasing over time because it does not consider decay other than in the dated layer of interest. The uppermost layer of peat representing the last timestep (Δt5) appears to accumulate at a greater rate than the older cohorts that have undergone progressively more decay with age. For example, the first or deepest cohort, formed in Δt1 (layer 1 in the figure), has an initial C content of 0.5, which, through decay, becomes 0.34, 0.22, 0.15, and finally 0.1 by the end of Δt5. Ascending from this deepest layer, aCAR increases to the surface, giving a pattern that is the opposite of the real rate (NCB), as shown by the graph in the lower right of Fig. 1.Two fundamental differences between aCAR and NCB are revealed here. First, NCB is measured in ‘real time’ (the fluxes are estimated for the time period in which they occur), whereas aCAR is measured between dated layers in a peat core that may have been taken many decades or centuries after the layer was first formed (at the end of Δt5 in our example). This ‘delay’ means that aCAR does not take account of changes to a cohort of peat after its initial formation. For example, if the peatland in Fig. 1 had been cored at the end of Δt4, rather than at the end of Δt5, the aCAR calculated for the lowermost cohort of peat in the profile (layer 1) would be 0.15 and not 0.1. Therefore, aCAR is dependent on the time at which the peatland is cored. This dependency is the ageing effect noted in the Introduction.Secondly, and more importantly, unlike NCB, aCAR does not consider what happens in the whole profile, which is necessary when constructing a whole-peatland C budget. For example, NCB during Δt4 comprises litter addition but also decay losses from the litter laid down in the previous three timesteps, giving a value of 0.15 (inputs of 0.5 minus decomposition losses of 0.35—see Fig. 1). When aCAR is calculated for the same time period—i.e., Δt4—it considers only the remaining mass of new peat laid down during Δt4, giving a value of 0.34 (for a core taken at the end of Δt5).If aCAR is calculated for the column of peat as a whole at Δt5 to give RERCA (i.e., the C mass of the whole core, given by 0.5 + 0.34 + 0.22 + 0.15 + 0.10 = 1.31 units of C, divided by 5 [timesteps]), it will give the correct average NCB (0.26) for the period between Δt1 to Δt5. This correspondence in values may be regarded as unusual because the acrotelm comprises the whole peatland in Scenario 1; using the whole peat profile means that all additions and losses are accounted for, making it impossible for RERCA to give anything other than the right value. However, in most situations the acrotelm sits atop a catotelm and there won’t be a correspondence of values between RERCA and NCB, as we show below in the next two scenarios and also in the next section (‘RERCA and net C balance are not comparable in near surface peat: the peatland mass balance equation and its misuse’).It may be argued that the situation in Fig. 1 is too simple because there is no lower zone of waterlogged peat; there is no catotelm, as seen in most peatlands. In Scenario 1, the water table resides at the bottom of the peat profile—all of the peat is in the acrotelm—and all litter/peat decay occurs at the same (oxic) proportionate rate. We can, however, extend the model by assuming that older, more decayed peat, is less permeable14 and that water drains less readily through it, causing the water table to rise. Figure 2 shows one realisation of this possibility (Scenario 2). In the figure, the acrotelm is in a dynamic equilibrium: its mass remains constant, but new litter continues to be added to it at a constant rate, while the oldest cohorts at the bottom become part of the waterlogged catotelm as the water table rises above them. In Scenario 2, the cohorts that have reached a specified degree of decay (80%, or cohorts with a remaining mass of 0.2) are transferred to, or become part of, the catotelm. Therefore, cohorts added to the top of the acrotelm are buried under new litter and continue to decay until they become part of the catotelm. This situation is similar to that modelled by Clymo14, with the main difference being that peat below the water table in Scenario 2 is assumed not to decay at all (Clymo14 allowed for a low rate of decay). The peatland accumulates mass at a constant rate, as shown by the straight dashed lines fitted to the top of the peat profile in Fig. 2.Figure 2Scenario 2 showing a dynamic acrotelm of constant mass, and a steadily-thickening catotelm (blue-grey shading representing waterlogged peat). Layers 1–4 become submerged by the rising water table, and by Δt9 the acrotelm comprises layers 5–9.Full size imageWhat happens if we core the peatland in Scenario 2 at the end of Δt9 and calculate aCAR for each of layers 1–9? We see that aCAR for layers 1–5 has now changed to 0.1 compared to the ascending values obtained when the peat was cored at Δt5 (Fig. 1). This difference is because these layers have now decomposed further before becoming part of the catotelm when decay ceased. An apparent increase in rates of C accumulation is still evident, however, but now in the layers of peat formed between Δt5 and Δt9 (layers 5–9) that lie above the water table and form the acrotelm.Both aCAR and NCB are plotted against time in the graph in the lower right of Fig. 2. aCAR shows a pattern similar to that from many real peat cores: a low and relatively stable aCAR in the older parts of the peat core, with an increase as one approaches the peatland surface10. It is instructive to compare these values with NCB. NCB was high initially when the peatland first formed (Scenario 1: Δt1 to Δt5) and declined to a steady value (Scenario 2: Δt6 to Δt9). As with Scenario 1, aCAR erroneously suggests that the net rate of C accumulation has increased to the present, and only one of the aCAR values corresponds to NCB (0.1), now for Δt5 (layer 5). In contrast to Scenario 1, RERCA (again applied to the acrotelm as a whole) is now wrong, giving a value of 0.26 ((0.5 + 0.34 + 0.22 + 0.15 + 0.1)/5 [timesteps]), instead of the correct value of 0.1.Finally, in Scenario 3 we may consider what happens if the peatland experiences a drought that causes the water table to fall so that layers that were in the catotelm and below the water table are now exposed above it and undergo renewed or ‘secondary’ oxic decay9. A realisation of this situation is shown in Fig. 3, where the peatland, overall, loses mass during Δt10. During the timestep, the peatland gains 1.0 mass units of litter but loses 1.06 mass units via decay of existing layers of peat above the drought water table (the layers laid down during Δt2–Δt9), giving a net rate of accumulation of − 0.06. For C the figures are a gain of 0.5 and a loss of 0.53, giving a net loss of 0.03 mass units of C per unit area (Fig. 3). If the peatland is cored at the end of Δt10 and aCAR calculated, the same problems as identified before are evident. aCAR suggests that C accumulation is increasing over time to the present. In addition, in this scenario not only does RERCA, when applied to the acrotelm as a whole, give the wrong value of net C accumulation, it also gives the wrong sign. In Scenario 3, RERCA suggests a net C accumulation rate of 0.18 (when calculated for the now deeper acrotelm incorporating the cohorts formed between Δt2 and Δt10), when in fact the peatland as a whole has become a net source of C. Here, we repeat an important point made by11: aCAR cannot be negative.Figure 3Scenario 3 showing a net loss of peat mass caused by the secondary decay of previously waterlogged layers of peat. During the drought in Δt10 the water table falls to the top of layer 1, exposing previously ‘protected’ peat in layers 2–5 to oxic decay (secondary decay).Full size imageOther scenarios in addition to the three discussed here are possible, such as ones that include changes in rates of litter production as well as changes in decay in response to drought (a modification of Scenario 3), and these may even lead to a decrease in aCAR towards the top of a core. However, the three scenarios have, between them, sufficient generality for revealing why aCAR is an unsatisfactory measure of C accumulation in peatlands. All peatlands are expressions of the balance equation: organic matter is added via litter production and is lost via decay (and sometimes erosion—not considered here). Therefore, regardless of differences in specific production and decay rates, scenarios akin to those considered above may arise in all types of peatland. In other words, the problems identified with the use of aCAR in each scenario apply regardless of the values of litter production and the decay coefficient that are used. It is clear that aCAR is misnamed; it is not a measure of net C accumulation rate—it never can be because of the way it is calculated. In the next section we extend our analysis to show that the calculation of aCAR is based on an erroneous version of the peatland mass balance equation. For simplicity, we confine our analysis to RERCA, which, as we note severally above, is aCAR applied to the uppermost part of the peat profile spanning the most recent decades in a peatland’s history; often, the acrotelm as a whole.RERCA and NCB are not comparable in near surface peat: the peatland mass balance equation and its misuseAn advantage of the simple peatland model is that the problems associated with calculating aCAR for near-surface peat become readily apparent. While it is not difficult to grasp intuitively how the artefact of an apparent increase in rates of net C accumulation arises, the exact cause of the apparent increase can be easily identified when cohorts of litter or peat are tracked over time as in Scenarios 1 and 2 (Figs. 1, 2). The simple model is, however, even more useful when considering the problem of RERCA. Without recourse to the simple model, it seems reasonable to suggest that the mass of the acrotelm divided by its overall age (obtained by dating the peat at its base), gives a reliable ‘bulk’, or time-averaged, estimate of the net rate of C accumulation for the peatland as a whole. In Fig. 1 we show that this suggestion is correct for a newly-formed acrotelm (because, in this case, all additions and all losses are considered), and it is tempting to think that it also applies to other situations. After all, the acrotelm contains new peat added in the years since the date of the acrotelm-catotelm boundary, so this would appear to be a net gain to the peatland, especially if there is little or no decay in the underlying catotelm.Our simple peatland model shows why this apparently reasonable view is mistaken in more typical situations (more typical than Scenario 1) where the acrotelm is already in existence and does not develop from scratch, and where a catotelm is present. Scenario 2 is one such situation. Here, the extant acrotelm has a fixed mass, but is dynamic: mass is added to it via litter production and mass is lost from it via decay and transfer to the catotelm (the latter caused by water-table rise). Conceptually, the acrotelm can be thought of as a simple store. To obtain an estimate of the rate of net mass addition or loss, it is necessary to look at the change in the store’s mass over time. In equation form, where Ia is litter input rate to the acrotelm (M L−2 T−1), Oa is output rate from the acrotelm (decay as well as transfer of peat to the catotelm) (M L−2 T−1), Sa is the amount of mass in the acrotelm store (M L−2), t is time (T), and i is time level, we can write the balance equation thus:$${I}_{a}-{O}_{a}=Delta {S}_{a}/Delta t=left({S}_{a,i}-{S}_{a, i-1}right)/left({t}_{i}-{t}_{i-1}right)$$
    (1)
    What this equation shows is that, if we measure ΔSa/Δt, we can obtain the rate of net mass addition (Ia − Oa) in the acrotelm. In Scenario 2 (Fig. 2), we see that ΔSa between any of the time steps is zero, meaning that Ia − Oa is also zero; there is no net accumulation of peat or C in the acrotelm. For example, at the end of Δt7 Sa,7 is 2.62 (1.0 + 0.67 + 0.45 + 0.30 + 0.20) (for C, the figure is half of this). At the end of Δt8 Sa,8 has the same value (although some different cohorts are now involved because the acrotelm has migrated upwards). Therefore, the right hand side of Eq. (1) gives (2.62–2.62)/(8–7) = 0. ΔSa/Δt is zero, as is Ia − Oa.Equation 1 may be rendered wrongly as follows:$${I}_{a}-{O}_{a}={S}_{a}/Delta t={S}_{a, i}/left({t}_{i}-{t}_{i-1}right)$$
    ΔSa/Δt has been replaced by Sa/Δt. Here, net peat and C accumulation is being estimated from the mass in the acrotelm at one time only. This erroneous version of Eq. (1) is what is used when calculating RERCA, where Sa,i is the current mass of the acrotelm (i.e., at ti) and ti-1 now represents the age at the base of the acrotelm. If we apply this version of Eq. (1) to Scenario 2, we obtain 2.62 [the mass of peat per unit area held in the acrotelm]/5 [the difference in age between the peat at the top and bottom of the acrotelm] = 0.524 mass units per unit area per timestep, instead of the correct ΔSa/Δt value of zero. In C terms, the value is 0.262 C units per unit area per timestep (again, instead of the correct value of zero). This erroneous version of the equation can generally only produce the right result in the specific and unusual case where the mass in the acrotelm at ti−1 (Sa,t−1) is 0 (i.e., Scenario 1).However, there is a further problem here; the change in mass of the catotelm has been ignored. As noted above, the acrotelm loss term (Oa) includes two components: the loss of peat to decay and the transfer of peat from the acrotelm to the catotelm. Only the former represents a loss from the peatland; the latter remains part of the peatland and should not, therefore, be included in the loss term when calculating the net C balance of the peatland. In other words, it is not enough to look at the acrotelm alone when estimating the C budget of the peatland as a whole, even when decay in the catotelm is zero. When estimating the net rate of C accumulation for the whole peatland, a balance equation that includes both the acrotelm and the catotelm is needed:$${I}_{a}+{I}_{c}-{O}_{a}-{O}_{c}=left(Delta {S}_{a}+{Delta S}_{c}right)/Delta t=left({S}_{a,i}-{S}_{a, i-1}+{S}_{c,i}-{S}_{c,i-1}right)/left({t}_{i}-{t}_{i-1}right)$$
    (2)
    where the subscript c denotes the catotelm.Calculated correctly, the net C balance of the peatland in Scenario 2 between t7 and t8, for example (see above), is therefore (1.31 − 1.31 + 0.3 − 0.2)/(8 − 7) = 0.1 as shown in Fig. 2.In Scenario 2 we could have allowed the catotelm to decay slowly at an anoxic rate, which would have meant that the rate of peat accumulation would decrease very slightly over time, but this would not alter our main finding that aCAR wrongly suggests a rapid increase in rates of accumulation. In fact, the discrepancy between aCAR and NCB would be even larger in such a situation from t5 onwards; therefore, our assumption is conservative. What this simple analysis shows is that measurements in the acrotelm alone cannot, except in special cases, be used to provide information on the overall C balance of a peatland. In other words, RERCA is based on a misuse of the balance equation: to estimate the mass balance of the peatland as a whole, it is necessary to measure all of its components.Equation (2) allows for situations where the catotelm gains mass and C and where it is a net loser. However, it can sometimes be unclear where the boundary of the acrotelm and catotelm should be drawn. For example, in Scenario 3, should the acrotelm include layers 2–5 or not? It may be preferable to think of ‘acrotelm’ and ‘catotelm’ as somewhat contrived entities31, in which case the peatland should be considered a single store, giving:$${I}_{p}-{O}_{p}={Delta S}_{p}/Delta t=left({S}_{p,i}-{S}_{p, i-1}right)/left({t}_{i}-{t}_{i-1}right)$$
    (3)
    where the subscript p denotes ‘peatland’.Our simple peatland model and mass balance equations demonstrate why aCAR, and the special case of RERCA (aCAR for recent peat accumulation), cannot be used to understand changes to peatland C accumulation. However, peatlands develop over millennia and include a wide range of processes including feedbacks32 that can mediate their response to climate and land use, which are not represented in the simple model. We therefore used a more detailed process-based model (DigiBog) to simulate peatland development over thousands of years and to explore the dynamics of aCAR and NCB in response to perturbations to our model’s driving data.Simulating the effect on aCAR and NCB of changes in climateWe used the DigiBog peatland development model10,27 to ‘grow’ a sloping blanket peatland from the north of England over six millennia (see “Methods”). Our model simulates the peatland as a series of linked columns of peat. These can gain or lose mass (including C) depending on the climate inputs, simulated land uses and the autogenic mechanisms of the virtual peatland. And because the model records during the simulation the height of each peat column (based on the addition of mass to the peatland surface and the change in mass of each sub-surface peat layer), we can calculate the rate of change in the mass of C at each time step ((Delta t))—i.e. we know a peat column’s or the peatland’s NCB throughout the whole developmental history of the peatland (see “Methods”). At the end of a simulation we can also take a virtual core for a column and, as previously described, use the difference in age between the top and base of the layers within it, to calculate aCAR (see “Methods”). Because NCB must be calculated at the time the C fluxes occur, it is only possible to compare these past long-term dynamics of aCAR and NCB by using a peatland model.Here we show aCAR and NCB from four simulations of the single blanket peatland (see “Methods” for details of the model set up). The results are shown in Figs. 4, 5 and 6. We used the net rainfall (precipitation minus evapotranspiration) and temperature inputs from10 for a baseline simulation (Figs. 4 and 5) and ran three modifications to the same dataset: (1) a 0.4 m reduction in annual net rainfall to simulate a long-term drought; (2) a 1.5 °C increase in air temperature to simulate a warming climate; and (3) the inputs from 1 and 2 combined (Fig. 6). All other input parameters remained unchanged from the baseline simulation (see “Methods”). To create the perturbations in driving data we linearly increased or decreased the input(s) over 100 years and allowed the simulation to continue using the modified data for a further 200 years before reversing the increase to use the original time series for the remainder of the model run (the total time of a modification—400 years—is henceforth known as the perturbation). We implemented the temperature perturbation (Fig. 6a) earlier than the one for net rainfall (Fig. 6b) so that we could see the effect of later events on aCAR and NCB (Fig. 6c) (see “Methods” for the details and timings of the driving data perturbations).Figure 4Development of the virtual blanket peatland over six millennia. (a) Water-table depth and (b) the peat surface from the virtual core at the centre of the peatland from the baseline simulation (see the main text and “Methods”).Full size imageFigure 5aCAR and NCB (20 year moving average) for the baseline simulation (see “Methods”). The aCAR values are for a virtual core taken from halfway down the modelled hillslope at the end of the simulation. NCB is calculated during each year of the simulation (i.e. at the time peat is gained or lost) and is akin to measuring C fluxes. The inset shows the typical ‘uptick’ of aCAR in recently-accumulated peat layers seen in many peat cores.Full size imageFigure 6The effect of climate perturbations on simulated aCAR and NCB (20 year moving average). (a) Increase in temperature of 1.5 °C, (b) reduction in annual net rainfall of 0.4 m, and (c) both perturbations combined. The light grey vertical bars indicate the timing and duration of the perturbations and the dark grey dashed line is where C accumulation equals zero. The increases in NCB near to the beginning and end of the net rainfall perturbation (a and b) are due to the peatland water tables falling and later rising into the zone of maximum litter addition in DigiBog’s litter production equation.Full size imageOur more detailed model shows aCAR and NCB (Fig. 5) conform to a pattern similar to the one given by our simple peatland model in Scenario 2 (Fig. 2). These dynamics are also predicted by the models used by11,15, and clearly show that aCAR is not the same as NCB. The modelled ‘uptick’ in aCAR in recently accumulated peat (towards the right-hand side of Fig. 5) is also seen in real cores taken from peatlands in a wide range of environments10. The uptick is due to the ‘acrotelm effect’ explained earlier.The climate perturbations in Fig. 6 further illustrate why aCAR should not be used to represent NCB. Although they don’t have the same values as each other, aCAR and NCB in Fig. 6a increase and decrease similarly during the period in which the temperature perturbation occurs. This correspondence is because warming has shifted the peatland’s mass balance to be more in favour of plant litter production than the losses from decomposition. In this instance it might seem reasonable that aCAR can be used to indicate NCB. However, in Fig. 6b, the picture is more complicated and aCAR and NCB produce very different responses. The reduction in net rainfall deepens the peatland’s water tables, shifting the mass balance in favour of decomposition (i.e. all losses exceed all gains), but the changes in aCAR do not coincide with the timing of the perturbation. Whilst NCB is affected at the time of the climatic drying and becomes negative (there is an overall loss of C), the effects on aCAR are offset, but at no time is aCAR negative (it cannot be, as we explain earlier and as explained by11). aCAR suggests that C accumulation has reduced before the perturbation takes place but NCB has not actually changed at this time. This mismatch is because, as well as continuing to decompose, a peat layer can be altered by events that take place many years after it was originally formed. The reduction in aCAR shown in Fig. 6b is known as secondary decomposition or decay9,33. There follows a significant increase in aCAR ‘apparently’ indicating that C accumulation is also increasing when, in fact, the peatland is losing C as shown by NCB. This apparent increase in C is because a shift to deeper water tables can increase plant production; i.e., the mass added to the peatland increases. But because aCAR does not include the C fluxes from the whole peat column it does not take account of the increase in decomposition (the mass lost), and so the total change in C stored is not seen. Our simple peatland model in Fig. 3 also demonstrates how this difference between aCAR and NCB occurs.Finally, when the perturbations are combined (Fig. 6c), the increase in aCAR around 1,600 years ago, caused by an increase in temperature, is partially wiped away by secondary decomposition before sharply declining, but NCB remains unchanged. Whilst it is likely that an assessment of aCAR would conclude that C accumulation had reduced during the time when the temperature was perturbed, the interpretation of both the timing and the magnitude of the reduction would be wrong. And the increase in aCAR starting around 600 years ago would also be misinterpreted as an increase in C accumulation rather than an overall reduction in the peatland’s C store.Implications for assessing changes in peatland C accumulation ratesOur simple peatland model, mass balance equations and DigiBog simulations, along with evidence from previous studies10,11,14,15,17,19 show that aCAR and RERCA cannot generally be used to assess changes to the rate of peatland C accumulation (NCB). Therefore, studies that use aCAR to indicate changes in peatland carbon balance processes over time (acrotelm effect) or to estimate NCB are unreliable and should be viewed with considerable circumspection.As our simple peatland model scenarios show, in general, aCAR does not equal NCB11. Because all peatlands accumulate C according to the mass balance equation—i.e. assessing a peatland’s C balance requires that all of the peatland profile is taken into account and not just a dated section of it—our results apply to all peatlands in all circumstances. The only instance when we can be sure that aCAR equals NCB is when it is calculated for the whole of a peatland’s developmental history11. However, an average C accumulation rate for the entire history of the peatland is of limited use; land managers, researchers and policy makers are usually interested in how NCB has changed over time in response to climate and land-use. Although in some other circumstances (e.g. Fig. 6a) it appears that aCAR and NCB are sufficiently similar for aCAR to be useful (and sometimes they coincide—see Fig. 6 and11), this assessment can only be made because we can calculate NCB from our model outputs and compare the two quantities. But, unless NCB is known from C flux measurements or model simulations of peatland development, the correspondence of aCAR to NCB cannot be established.The results of our simulations, and those from other studies10,11, also show how some land uses or changes to the climate may cause further mismatches in the timing, magnitude and sign of aCAR and NCB. Although acknowledging that aCAR gives an erroneous estimate of past rates of NCB, Frolking et al.11 do not advocate abandoning its use. Based on our evidence, and that provided by other studies, we suggest there is a need to go further. Given that aCAR is based on a mistaken use of the balance equation and can give the wrong sign of NCB as well as the opposite trend, we believe that it should no longer be acceptable to use aCAR to indicate changes in NCB.Our simulations produce virtual and not real peat cores, and, by necessity, all models are simplifications of reality. The perturbations to our driving data are at the high end of what might be experienced naturally but are not implausible. They allow us to see more clearly how such events might affect the timing, magnitude and sign of aCAR in comparison to NCB. If our model is configured for a different type of peatland (e.g.10 simulated a raised bog) with different driving data or changes to land use, the results for aCAR and NCB will likely be different from the ones we show here. But despite these differences we would still not be able to reliably predict NCB from aCAR.The challenge of understanding if C accumulation rates have been altered by external forcing has been discussed in the literature since14, but the implications of using aCAR to indicate NCB have recently been brought to the fore because of the imperative to assess the impact of climate change and land use on peatland C cycling. By highlighting and explaining the deficiencies of aCAR, our aim is to encourage the use of more robust and reliable approaches for calculating past actual C accumulation rates (NCB). Ideally, direct measurements of C fluxes would be used10, but such observations are not available for many sites and, where they do exist, they will cover only the last few decades at most (see above). Therefore, for C accumulation histories extending to centuries and millennia, we propose that C balance models fitted to peatland age-depth (or age-mass) curves are used to estimate if NCB has changed over time. Simple models—for example, that of14—are already used in this regard and are worthy of further investigation19,28,34,35,36. For example, several studies have derived peatland NCB at the global28,37 regional35, and local17,19 scales. The authors back-calculate NCB from the net C pool using empirical models that consider autogenic long-term peat decomposition14. In a further step, with the aim of understanding if contemporary C accumulation rates were different from past rates17 and19 compared the calculated NCB from the catotelm to predictions of peat C mass transfer at the acrotelm-catotelm boundary, using a forward model of acrotelm peat decay. That being said, these approaches cannot differentiate the effects of long-term autogenic decay on peat versus that of secondary decomposition, which could be brought about by land-use or climate change.Given the limitations of such approaches, we encourage exploration of the potential of fitting more complete ecosystem models like the Holocene Peat Model38, MILLENNIA39 and DigiBog to data from peat cores to help estimate changes in peatland function over time. Observations of peat depth and downcore humification along with the inclusion of proxy data from the peatland in question—often shown in palaeoecological studies—are also important for contextualising model outputs10.In conclusion, aCAR is an unsuitable proxy for the actual C accumulation rates of peatlands. Approaches that conceptualise peatlands as dynamic C stores—the balance of all mass additions and losses – are needed. And, as we have noted, some studies, recognising the problems of aCAR, have provided potential alternatives. However, to be useful, it is likely that existing models will need to be modified, tested and their suitability assessed, or new ones developed so that credible comparisons of the effect of climate change or land uses on peatland C accumulation rates can be made. More

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    Visual marking in mammals first proved by manipulations of brown bear tree debarking

    Among the many groups of terrestrial species, our understanding of mammal visual signalling might be hampered by the fact that most research on mammals has focused on chemical (e.g., scat, urine, and glands) and acoustic (e.g., howling) signalling1,2. Instead2,3, visual communication might be an overlooked communication channel2,4, despite being perhaps as important as the others, if we consider that: (1) mammal coloration has evolved for inter- and intraspecific communication2,4,5,6,7, which means that mammals use visual signals to communicate; and (2) visual signalling through physical marks (e.g., bites and scratches) is permanent and, thus, has the obvious advantages of (a) being long-lasting, i.e., environmental factors such as rain or snow are less likely to affect the detectability of visual marks as compared to, e.g., chemical signalling8, although mammals have found strategies to make chemical signalling last as long as possible9, and (b) functioning remotely, i.e., even when the signaller is away from the marked location2. Visual marking may also allow individuals to reduce repeated visits to strategic marking points, and thus save time and energy, which would otherwise detract animals from other activities, like foraging and reproduction10. Therefore, visual signalling may represent a reliable and advantageous communication channel8.Solitary species like bears may benefit from advertising their location, size, and reproductive status to expedite mate selection during the breeding season. Moreover, brown bears usually occur at low densities across their range, making direct interactions with one another infrequent11,12. Thus, long-lasting visual signalling may be particularly effective and considerably time saving. To date, studies on bear communication have highlighted two main forms of communication10,13,14,15,16,17: (1) olfactory communication, i.e., the marking of focal trees by rubbing the body against the trunk and/or by urination and deposition of anogenital gland secretions; and (2) pedal marking, by which bears mark the ground with their scent by grinding their feet into the substrate. Auditory communication, e.g., vocalizations used as threats during agonistic encounters, to advertise sexual receptivity, or for communication between females and their cubs, is considered as the least important channel through which bears signal, whereas visual communication has always been considered limited to different forms of body postures or behavioural displays (but see18).Since the beginning of the 1980s, bear marks on trees have puzzled researchers8. The function of, and motivation behind, tree biting and clawing have prompted a variety of theories related to glandular scent deposition (i.e., chemical signalling), but none of these hypotheses has been considered satisfactory, nor have they ever been tested8.
    The debarking behaviour of brown bears Ursus arctos, which leaves bright and conspicuous marks on tree trunks (see Extended Data Fig. 1 and Extended Data Fig. 2), presents a unique yet unexplored opportunity to investigate new ways of visual communication in terrestrial mammals, and to better understand both bear and carnivore communication broadly. The hypothesis behind this experimental work is that brown bears may rely on visual communication via the conspicuous marks that they produce on trees.Figure 1Brown bear response to trunk mark manipulation. The behavioural sequence of an adult male brown bear removing the pieces of bark that we used to conceal the visual markings on an ash tree during the mating season in the Cantabrian Mountains, Spain (12/06/2020, 15h37). The whole sequence is shown in the video footage Extended Data Fig. 5.Full size imageAfter manipulating bear tree marks in the Cantabrian Mountains (north-western Spain), we found that bears removed the bark strips that we used to cover their marks during the mating season (Extended Data Figs. 3 and 4), suggesting that bear debarking may represent a visual communication channel used for intraspecific communication.Brown bear responses to marked tree manipulationsAfter concealing bear marks due to trunk debarking with bark strips from the same tree species (see “Methods”), our manipulations on 20 trees triggered a rapid reaction from brown bears. Between the 16th of May and the end of September 2020 (overlapping part of the brown bear mating period in the Cantabrian Mountains19), brown bears removed the strips of bark that we used to cover the trunk marks in 9 (45%) out of the 20 manipulated trunks (Fig. 1 and Extended Data Fig. 5). However, if we consider that these nine trees were also the ones that we could manipulate (because of field work restrictions due to COVID-19) from the start of the mating season (beginning of May), 100% of the bark strips used to cover tree marks were removed by bears when the manipulation occurred at the commencement of the mating season. In only one case, a bear removed the bark strips covering marks on a tree that was manipulated later in the mating season (end of June). Control bark strips fixed to (a) the same trunk as the manipulated bear mark, (b) the nearest neighbouring tree to the manipulated one showing bear marks, and (c) the nearest rubbing trees with no bear marks, were never removed by bears. In two cases (50%), after the first removal of the manipulated mark by a bear, which was subsequently covered again with new strips (n = 4), a bear removed the strips a second time. Further, camera traps showed that: (1) bears uncovered the manipulated marks the first time they visited the tree after our manipulation; (2) bark strips that were not removed were always the result of bears not visiting the site after tree manipulations; and (3) the shortest lapse of time between a mark manipulation and a bear visiting the tree for the first time and uncovering the mark was seven days. Thus, manipulations always triggered a rapid response from bears when adult males, probably the same individuals that debarked the trunks, came back and check on marked trees.Conspicuousness of brown bear visual marksThe conspicuousness of a visual signal is not only increased by its position in a noticeable location, but also by the contrast between the signal and its background20,21. A remarkable difference (pixel intensity: mean (± SD) = 85.09 ± 26.77, range = 20.27–177.06) exists between bark and sapwood brightness for all tree species (t = 19.07, p =   More

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    Lagged recovery of fish spatial distributions following a cold-water perturbation

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    Author Correction: WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees

    These authors contributed equally: Anne-Christine Monnet, Kévin Cilleros, Agathe Leriche.Aix Marseille Univ, Avignon Univ, CNRS, IRD, IMBE. Technopôle de l’Arbois-Méditerranée, cedex 4, BP 80, 13 545, Aix-en-Provence, FranceAnne-Christine Monnet, Kévin Cilleros, Frédéric Médail, Manuel Cartereau, Aggeliki Doxa, Daniel Pavon & Agathe LericheInstitut de Systématique, Evolution, Biodiversité (ISYEB), Muséum national d’Histoire naturelle (MNHN), CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, FranceMarwan Cheikh AlbassatnehDepartment of Plant Biology and Ecology, University of Seville, Seville, SpainJuan Arroyo, Marcial Escudero & Estefania Santos BareaDepartment of Life and Environmental Sciences, University of Cagliari, Viale Sant’Ignazio da Laconi 13, Cagliari, ItalyGianluigi BacchettaNational Research Council, Institute of Biosciences and Bioresources, 50019, Sesto Fiorentino, (FI), ItalyFrancesca Bagnoli, Ilaria Spanu & Giovanni Giuseppe VendraminDepartment of Botany, Hungarian Natural History Museum, Pf. 137, Budapest, 1431, HungaryZoltán BarinaFRB-CESAB, 5 rue de l’Ecole de Médecine, 34000, Montpellier, FranceNicolas CasajusDepartment of Biology, Laboratory of Botany, University of Patras, 26504, Patras, GreecePanayotis DimopoulosDepartment of Agriculture, Food and Forest Sciences, University of Palermo, Viale delle Scienze bldg. 4, 90128, Palermo, ItalyGianniantonio DominaStatistical Learning Lab, Institute of Applied and Computational Mathematics, Foundation for Research and Technology-Hellas (FORTH), Ν. Plastira 100, Vassilika Vouton, GR – 700 13, Heraklion, Crete, GreeceAggeliki DoxaINRAE, UR629, Ecologie des forêts méditerranéennes, Avignon, FranceBruno Fady & Anne RoigINRAE, Univ. Bordeaux, BIOGECO, F-33610, Cestas, FranceArndt HampeMacedonian Academy of Sciences and Arts, Krste Misirkov 2, 1000, Skopje, Republic of MacedoniaVlado MatevskiEcoGozo, Regional Development Directorate – Ministry for Gozo, Flat 6, Sunset Court B, Triq Marsalforn, Xaghra, Gozo, MaltaStephen MisfudDepartment of Botany, Faculty of Science, University of Zagreb, Zagreb, CroatiaToni NikolicBakkevej 6, 5853, Ørbæk, DenmarkArne Strid More

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    Size, microhabitat, and loss of larval feeding drive cranial diversification in frogs

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