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    Long-term capture and handling effects on body condition, reproduction and survival in a semi-aquatic mammal

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    Forest production efficiency increases with growth temperature

    Definitions of terms
    GPP is defined here as ‘the sum of gross carbon fixation (carboxylation minus photorespiration) by autotrophic carbon-fixing tissues per unit area and time54. GPP is expressed as mass of organic carbon produced per unit area and time, over at least one year. NPP consists of all organic carbon that is fixed, but not respired over a given time period54:

    $${mathrm{NPP}} = {mathrm{GPP}}-R_{mathrm{a}} = {Delta}B + L + F + H + O = {mathrm{BP}} + O$$
    (3)

    with all terms expressed in unit of mass of carbon per unit area and time. Ra is autotrophic respiration (composed of growth and maintenance respiration components); ΔB is the annual change in standing biomass carbon; litter production (roots, leaves and woody debris) is L; fruit production is F; the loss to herbivores is H, which was not accounted here because of the very limited number of observations available. BP is biomass production4. Symbol O represents occult, carbon flows, i.e. all other allocations of assimilated carbon, including changes in the nonstructural carbohydrate pool, root exudates, carbon subsidies to symbiotic fungi (mycorrhizae) or bacteria (e.g. nitrogen fixers), and BVOCs emissions (Supplementary Fig. 1). These ‘occult’ components are often ignored or unaccounted when estimating NPP, hence this bias is necessarily propagated into the Ra estimate when Ra is calculated as the difference between GPP and NPP55.
    Estimation methods
    We grouped the ‘methods’ into four categories:

    biometric: direct tree stock measurements, or proxy data together with biomass expansion factors, allometric equations and the stock change as a BP component. If not otherwise stated, we assumed that the values included both above- and below-ground plant parts (n = 13 for GPP; n = 200 for NPP or BP).

    micrometeorological: micrometeorological flux measurements using the eddy-covariance technique to measure CO2 flux and partitioning methods to estimate ecosystem respiration and GPP (n = 98 for GPP; n = 4 for NPP or BP).

    model: model applications ranging from single mathematical equations (for canopy photosynthesis and whole-tree respiration) to more complex mechanistic process-based models to estimate GPP and Ra, with NPP as the net difference between them (n = 53 for GPP; n = 24 for NPP or BP).

    scaling: upscaling of chamber-based measurements of assimilation and respiration (GPP and Ra) fluxes at the organ scale, or the entire stand (n = 73 for GPP; n = 9 for NPP or BP).

    The difference between ‘scaling’ and ‘modelling’ lies in the data used. In the case of ‘scaling’ the data were derived from measurements at the site. ‘Model’ means that a dynamic process-based model was used, but with parameters calibrated and optimized at the site, based on either biometric or micrometeorological measurements.
    Data selection
    The data were obtained from more than 300 peer-reviewed articles (see also ref. 5), adding, merging and extending published works worldwide on CUE or BPE4,9,11,23,25,56,57. Data were extracted from the text, Tables or directly from Figures using the Unix software g3data (version 1.5.2, Jonas Frantz). In most studies, NPP, BP and GPP were estimated for the tree stand only. However, GPP estimated from CO2 flux by micrometeorological methods applies to the entire stand including ground vegetation. We therefore included only those micrometeorological studies where the forest stand was the dominant primary producer. The database contains 244 records (197 for BPE and 47 for CUE) from >100 forest sites (including planted, managed, recently burned, N-fertilized, irrigated and artificially CO2-fertilized forests; Supplementary Information, Supplementary Fig. 3 and online Materials; https://doi.org/10.5281/zenodo.3953478), representing 89 different tree species. Globally, 170 records out of the total data are from temperate sites, 51 from boreal, and 23 for tropical sites, corresponding to 79 deciduous broad-leaf (DBF), 14 evergreen broad-leaf (EBF), 132 evergreen needle-leaf (ENF) and 19 mixed-forests records (MX). The majority of the data (∼93%) cover the time-span from 1995 to 2015. We assume that when productivity data came from biometric measurements the reported NPP would have to be considered as BP because ‘occult’, nonstructural and secondary carbon compounds (e.g. BVOCs or exudates) are not included. In some cases, multiple datasets from the same site were included, covering different years or published by different authors. We considered only those values where either NPP (or BP) and GPP referred to the same year. From studies where data were available from more than 1 year, mean values across years were calculated. When the same reference for data was found in different papers or collected in different databases, where possible, we used data from the original source. When different authors described the same values for the same site, one single reference (and value) was used (in principle the oldest one). By using only commonly available environmental drivers to analyse the spatial variability in CUE and BPE, we were able to include almost all of the data that we found in the literature. We examined as potential predictors site-level effects of: average stand age (n = 204; range from 5 to ∼500 years), mean annual temperature (MAT; n = 230; range −6.5 to 27.1 °C) and total annual precipitation (TAP; n = 232; range from ∼125 to ∼3500 mm yr−1), method of determination (n = 237), geographic location (latitude and longitude; n = 241, 64°07′N to −42°52′S and 155°70′W to −173°28′E), elevation (n = 217; 5–2800 m, above sea level), leaf area index (LAI, n = 117; range from 0.4 to 13 m2 m−2), treatment (e.g.: ambient or artificially increased atmospheric CO2 concentration; n = 34), disturbance type (e.g.: fire n = 6; management n = 55), and the International Geosphere-Biosphere Programme (IGBP) vegetation classification and biomes (n = 244), as reported in the published articles (online Materials). The methods by which GPP, NPP, BP (and Ra) were determined were included as random effects in a number of possible mixed-effects linear regression models (Supplementary Table 4).
    We excluded from statistical analysis all data where GPP and NPP were determined based on assumptions (e.g. data obtained using fixed fractions of NPP or Ra of GPP). In just one case GPP was estimated as the sum of upscaled Ra and NPP58; however, this study was excluded from the statistical analysis. NPP or Ra estimates obtained by process-based models (n = 23) were also not included in the statistical analysis. No information was available on prior natural disturbance events (biotic and abiotic, e.g. insect herbivore and pathogen outbreaks, and drought) that could in principle modify production efficiency, apart from fire. The occurrence of fire was reported by only a few studies59,60,61. These data were included in the database but fire, as an explanatory factor, was not considered due to the small number of samples in which it was reported (n = 6).
    Data uncertainty
    Uncertainties of GPP, NPP and BP data were all computed following the method based on expert judgment as described in Luyssaert et al.55. First, ‘gross’ uncertainty in GPP (gC m−2 yr−1) was calculated as 500 + 7.1 × (70−|lat|) gC m−2 yr−1 and gross uncertainties in NPP and BP (gC m−2 yr−1) were calculated as 350 + 2.9 × (70−|lat|). The absolute value of uncertainty thus decreases linearly with increasing latitude for GPP and for NPP and BP, because we assumed that the uncertainty is relative to the magnitude of the flux, which also decreases with increasing |lat|. Subsequently, as in Luyssaert et al.55, uncertainty was further reduced considering the methodology used to obtain each variable, by a method-specific factor (from 0 to 1, final uncertainty (δ) = gross uncertainty × method-specific factor). Luyssaert et al.55 reported for GPP-Micromet a method-specific factor of 0.3 (i.e. gross uncertainty is reduced by 70% for micrometeorological measurements); and for GPP-Model, 0.6. GPP-Scaling and GPP-Biometric were not explicitly considered in ref. 55 for GPP. We we used values of 0.8 and 0.3, respectively. For BP-Biometric and NPP-Micromet we used a reduction factor of 0.3; for NPP-Model, 0.6; and for NPP-Scaling (as obtained from chamber-based Ra measurements), 0.8. When GPP and/or NPP or BP methods were not known (n = 7), a factor of 1 (i.e. no reduction of uncertainty for methods used, hence maximum uncertainty) was used. The absolute uncertainties on CUE (δCUE) and BPE (δBPE) were considered as the weighted means62 by error propagation of each single variable (δNPP or δBP and δGPP) as follows:

    $$delta {mathrm{CUE}} = sqrt {left( {frac{{delta {mathrm{NPP}}}}{{{mathrm{GPP}}}}} right)^2 + left( {delta {mathrm{GPP}}frac{{{mathrm{NPP}}}}{{{mathrm{GPP}}^2}}} right)^2}$$
    (4)

    and similarly for δBPE, by substituting NPP with BP and CUE with BPE.
    Data and model selection
    The CUE and BPE data were combined into a single variable, as sites for which both types of estimates existed did not show any significant differences between these entities (Supplementary Fig. 2). CUE values based on modelling were excluded (in our database we do not have BPE data from modelling). Tests showed that the CUE value was systematically higher when GPP was estimated with micrometeorological methods, compared to values based on biometric or scaling methods. Only data with complete information on CUE, MAT, age, TAP, and latitude were used. Altogether, 142 observations were selected.
    In order to use the most complete information possible, a full additive model was constructed first (Eq. (1)). The method used for estimation of GPP (GPPmeth) was specified as a random effect on the intercept, as visual inspection suggested that CUE values were smaller where ‘scaling’ was used to estimate GPP compared to cases where ‘micromet’ was used to estimate GPP.
    In Eq. (1) the variable ‘age’ represents the development status of the vegetation, i.e. either average age of the canopy forming trees or the period since the last major disturbance. The other three parameters represent different aspects of the climate. The absolute latitude, |lat|, was chosen as a proxy of radiation climate, i.e. day length and the seasonality of daily radiation. The term ηZGPPMeth represents the random effect on the intercept due to the different methods of estimating GPP.
    These variables were not independent (Supplementary Table 1). If the different driver variables contain information that is not included in any of the other driver variables, multiple linear regression is nonetheless able to separate the individual effects. If, on the contrary, two variables exert essentially the same effect on the response variable (CUE) this can be seen in an ANOVA based model comparison. These considerations led us to the selection procedure in which we started with the full model (Eq. (1)) and compared it with all possible reduced models (Supplementary Table 2). The result of this analysis is the model with the smallest number of parameters that does not significantly differ from the full model.
    We also examined, whether there were any significant interactions of predictor variables. There were not.
    We used the R function lmer from the R-package lme463 to fit the mixed and ordinary multiple linear models to the data. We checked for potential problems of multicollinearity using the variance inflation factor (VIF)64. All predictors had VIF  More

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    Microbial community dynamics in phyto-thermotherapy baths viewed through next generation sequencing and metabolomics approach

    Temperature and pH
    Figure 1 shows the temperature trend during the July, August and October PTBs. In the first 35 h, all the PTBs showed similar temperatures rising from 26 to 35 °C – 39 °C (Fig. 1). In the following hours, the temperature showed different trends according to the month. In July, the temperature was stable for the first four days (96 h) and then rose, reaching the max. temperature of 51 °C. In August, the temperature was stable for the first 55 h and then rose reaching the max. temperature of 61 °C. Finally, in October, after the first 35 h, the temperature rose immediately reaching 50 °C, and then was stable reaching the max. of 64.8 °C.
    Figure 1

    Temperature dynamic of herbs pile bath during PTB. Temperature was recorded for seven days from day 0 to d7 each hour (24 h = d1; 48 h = d2; 72 h = d3; 96 h = d4; 120 h = d5; 144 h = d6; and 168 h = d7) at 20 cm of depth in the middle of the pool bath. In yellow is the temperature trend for July, in red August and in blue October batch.

    Full size image

    The pH (Table 1), in the first two days, was in a range between 6.2 and 6.5 with the exception of October when pH sowed a mean value of 7.4. After d5, the pH increased significantly and stabilized in a range between 7.4 and 7.8.
    Table 1 Microbiological counts (Log CFU g−1) and pH in the herbs samples in different days and month of the PTB.
    Full size table

    Microbial counts in herbs during PT process
    The counts of viable total aerobic, mesophilic and thermophilic anaerobic bacteria, enterobacteria, yeasts and moulds in July, August and October at day 0, d2, d3, d5 and d7 are shown in Table 1. The plate counts showed no significant difference for depth of sampling (p value  > 0.05; data not shown). The aerobic bacteria were always high at day 0 (6.7, 7.7 and 9.1 Log CFU g−1 in July, August and October respectively). In July and August, they significantly rose until d7, reaching similar amounts (8.7 and 8.8 Log CFU g−1 respectively). The mesophilic and thermophilic lactic acid bacteria (LAB) were very low in July and August at day 0 when they were present in traces or not detected (Table 1). Mesophilic LAB rose from d2 to d7 with a similar trend to aerobic bacteria reaching 5.9 Log CFU g−1. By contrast, in October they showed different trend: as aerobic bacteria, mesophilic LAB counts were very high at day 0 and stable without significant differences until d3 and then significantly decreased until d7 reaching 4.9 Log CFU g−1. Counts of thermophilic LAB showed similar trends in all the three months: they rose until d7 reaching similar amount in July, August and October (5.2, 5.7 and 5.1 Log CFU g−1 respectively). Enterobacteria counts were lower in herbs at day 0 (3.8, 4.3 and 5.0 Log CFU g−1 in July, August and October respectively) and then significantly rose until d7 reaching 6.2, 5.7 and 6.7 Log CFU g−1 in July, August and October respectively. In July, yeasts and moulds in the first two days were not detected or present in traces, then reached their highest value at d3 and significantly decreased until d7. By contrast, their counts were very high in both August and October; in particular, moulds counts trends were similar: they significantly decreased until d7 to 3.2 and 6.4 Log CFU g−1 in August and October respectively.
    Characteristics of the sequencing data
    The DNA extracted from the 90 PTB samples had been all successfully amplified. After merging and quality trimming the raw data, 2,980,511 reads for bacteria and 1,227,092 reads for fungi remained for subsequent analysis (Table S1). After alignment, the remaining Operational Taxonomy Units (OTU) had been clustered at a 3% of distance.
    Bacteria and fungi: alpha diversity
    The number of OTUs and the Shannon diversity index were determined using QIIME2 at 97% similarity levels (Table 2), in order to analyse the bacterial and fungi community richness in samples obtained during the PT process. Regarding the sample position (5 and 40 cm depth), there was no significant difference in both observed OTUs number and Shannon diversity index for bacteria and fungi communities (p value  > 0.05). It is worth noting that the degree of bacterial diversity was significantly higher in July and August than in October samples, by contrast, the degree of fungal diversity was significantly higher in July and October than in August samples (Shannon diversity index in Table 2).
    Table 2 Observed OTUs (Obs. OTUs) and Shannon diversity index (Shannon div. ind.) in the herbs at different depth, month and of day sampling of the PTB.
    Full size table

    The variation in number of OTUs and Shannon diversity index over time indicates highest microbial diversity at day 0 and d2, and a lower microbial diversity at d5 and d7.
    Bacteria and fungi: beta diversity
    The PCoA of UniFrac and Jaccard metric indicated clear clustering of both bacterial and fungi communities according to the different PTB days (Fig. 2a,b).
    Figure 2

    Principal coordinate analysis of Weighted UniFrac distances for bacterial community (a) and Bray–Curtis distances for fungi community (b) in PTB. The Time custom axis has been used to show the PCoA changes in the days. For interpretation of the symbols and colors the reader is referred to the legend.

    Full size image

    Bacterial and fungi communities were more phylogenetically dissimilar between successional days (day 0, d2, d3, d5 and d7) or months (July, August and October) than between position of sampling (5 and 40 cm). The bacterial Weighted UniFrac PCoA (Fig. 2a, total variation explained: 52.09%) and the fungal Jaccards PCoA (Fig. 2b, total variation explained: 32.83%) revealed a clearer picture of the similarities across different days. The PCoA plots emphasized the similarities of the bacterial and fungi communities in the PTB at d2 and d3 when compared with d5 and d7.
    These results were supported by the PERMANOVA statistical analysis (Table 3). The differences between position of sampling (5 and 40 cm) were not significant both for bacteria and fungi communities as the p values were 0.19 for bacteria and 0.27 for fungi community respectively. The differences among months of sampling were significant comparing July and August with October for both bacteria and fungi communities as well as the differences among microbial communities through time. The pairwise comparison (Table 3) clearly showed two significantly different stages during the PTB after day 0: the first stage including d2 and d3 (1st stage), and the second stage including d5 and d7 (2nd stage). The time effect on microbial composition (pseudo-F value) was showing a growing trend with the proceeding of the sampling days (Table 3). The bacterial pseudo-F values were smaller and smaller with progression of the days; by contrast, fungi pseudo-F values were higher. This means that the bacteria became more similar and the fungi more different in the samples from the three piles studied as the process progressed.
    Table 3 Permanova analysis (999 permutations) results for bacterial and fungi communities based on weighted unifrac and Jaccard distances respectively.
    Full size table

    Bacterial community structure
    Eleven prokaryotic phyla were found in the 90 samples accounting for the total bacterial community. The predominant phylum across all bacterial communities was the Proteobacteria, accounting for 33%–83% of the OTUs in each time and month of the PTB (Fig. 3). The trend of Proteobacteria was similar in all the months with different amount of presence: at day 0 and d2 Proteobacteria abundance was between 61% and 85%; at d3, showed a slight decrease (between 58% and 72%) and reached the lower values at d5 and d7 (between 33% and 65%). Twenty-six bacterial phylotypes were found dominant across all samples, accounting for the 90% of the total bacterial community. Of these 26 phylotypes (in Fig. 4), 10 belonged to Proteobacteria. Erwinia was the most abundant genus in this phylum and reached the higher presence at d2 and d3. Other frequently sequenced genera included Acinetobacter, Pseudomonas, mainly found at day 0, and unclassified genera belonging to Xanthomonadaceae family.
    Figure 3

    Phylum composition (in mean relative abundance) of herbs samples as revealed by high-throughput sequencing analysis. The samples were collected in triplicate from the same pool, for five days (day 0, d2, d3, d5, and d7) at 5 and 40 cm of depth, in July, August (Aug) and October (Oct). For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.

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    Figure 4

    Bacterial taxa groups (genus level or above) composition, in mean relative abundance, of herb samples as revealed by high-throughput sequencing analysis. The samples have been collected in triplicate from the same pool, for five days (d0, d2, d3, d5, and d7) at 5 and 40 cm of depth, in July, August (Aug) and October (Oct). (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article).

    Full size image

    Of the Alphaproteobacteria, the genera Agrobacterium, Methylobacterium, Sphingomonas and unclassified genera of the family Beijerinckiaceae were the most abundant and dominant at day 0. All these phylotypes showed a lowering trend in time decreasing from day 0 to d7 with the only exceptions of the Beijerinckiaceae that were higher at d7 than at day 0.
    Of the Betaproteobacteria, unclassified genera belonging to Alcaligenaceae and Oxalobacteraceae were the most abundant families. Their relative abundances were constant along the time and showed higher differences among the months than the sampling days (average values of relative abundance were 2.4%, 4.5% and 0.5% in July, August and October respectively).
    Firmicutes accounted for 12%–38% of the OTUs from d2 to d7 of the PT process. At day 0, Firmicutes were present only in October’s samples at 7%, then increased at d2 and remained stable until the end of the process (Fig. 3). Overall, there were 10 Firmicutes in the 26 most abundant phylotypes found during the PTBs (Fig. 4). Most of these were thermophilic bacteria such as Bacillus, Thermoactinomycetaceae, Brevibacillus and Paenibacillus6. These themophilic phylotypes had never been detected at day 0, appeared at d2 and reached their higher values at d5 when their presence accounted for 29.9%, 19.4% and 8.5% in July, August and October respectively.
    The Bacteroidetes constituted another dominant phylum detected in all the samples (Fig. 3). Bacteroidetes abundance at d0 was in the range of 1.4%–17.0%, decreased at d2, d3 and d5 to a range of 0.7%–8.1% and reached the highest values at d7 (between 8.1% and 21.2%). The most abundant genera belonging to this phylum were Flavobacterium and Sphingobacterium.
    The abundance of Actinobacteria was 1.0%–3.3% at day 0 and increased until the end of the process reaching a maximum of 7.5–36.6% relative abundances respectively (Fig. 3). The most abundant phylotypes in the Actinobacteria phylum were Microbacteriaceae and Streptomyces (Fig. 4); in particular, Streptomyces was one of the genera dominating bacterial community biodiversity at d5 and d7.
    Cyanobacteria were found at relative abundances higher than 1% only in July and August samples at day 0 and d2, with a maximum at day 0 (16.9% and 4.5% relative abundances in June and July samples respectively). After d2, Cyanobacteria decreased until the end of the process (Fig. 3). The relative abundance of Verrucomicrobia was 0.35%–2.8% at d0 and remained constant during the whole PTB process (Fig. 3). Chtoniobacteraceae was the most abundant bacterial family of the Verrucomicrobia phylum.
    Further bacterial phyla had always been found at very low relative abundances (never higher than 1.0%, Fig. 3).
    Fungal community structure
    Before the PTB started, the fungal community in the herbs (day 0 in Fig. 5), was dominated by Mycosphaerellaceaes (Mycosphaerella, Ramularia and Zymoseptoria genera), representing the 21.5%, 21.4% and 15.0% of the total in July, August and October respectively, and Bulleribasidiaceaes (Vishniacozyma, and Dioszegia genera) representing the 22.3%, 32.4% and 23.4% of the total in July, August and October respectively. Other fungal taxonomic groups, mainly belonging to the Ascomycota phylum, were detected in lower relative abundance (lower than 10%). After two days (d2), the Aspergillaceae family was emerging, mainly constituted by the Aspergillus genus with traces of Penicillium in 13 out of the 90 samples. Aspergillaceae dramatically increased from day 0 (always less than 1%) to d2 in July and August trials (10.6% and 24.9% respectively), and after d3 they became the most dominant fungi (26.6% and 83.2% respectively). By October, Bullerobasidiaceae was always the dominant fungal family at d2 and d3. After five days (d5 in Fig. 5), Bulleribasidiaceaes (lower than 10.6%) and Mycosphaerellaceae (lower than 6.5%) relative abundances decreased sharply. Aspergillaceae kept their rising trend, remaining the dominant fungal family in July and August trials (47.9% and 56.6% respectively), but they represented only the 11.4% of the fungal relative abundance in October. Other thermophilic species emerged in July and August: the Trichocomaceae mainly constituted by Thermomyces lanuginosus whose relative abundance was never higher than 2.1% in the first three days and then suddenly increased to 32.8% and 23.2% in July and August respectively.
    Figure 5

    Fungi taxa groups (genus level or above) composition, in mean relative abundance, of herb samples as revealed by high-throughput sequencing analysis. The samples were collected in triplicate from the same pool, for five days (d0, d2, d3, d5, and d7) at 5 and 40 cm of depth, in July, August (Aug) and October (Oct). (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article).

    Full size image

    After seven days (d7 in Fig. 5), the fungal community was totally dominated by Aspergillaceae (46.6%, 69.2% and 35.9% in July, August and October respectively) and Thermomyces lanuginosus (44.2%, 23.3% and 21.6% in July, August and October respectively). None of the OTUs was predominant throughout all samples.
    Volatiles organic compounds (VOCs) released during the PTBs
    After raw GCxGC–MS data deconvolution and pre-processing, the three dataset (July, August and October) consisted of 722, 1105 and 815 volatiles respectively. As already reported by Narduzzi et al.7, the majority of the VOCs are not in common among the months. The identified volatiles through all the three months’ datasets were matched using their InchiKey, and produced a table consisting of 295 VOCs present in all the months (Table S2). As shown in the top part of the Fig. 6, there is a cluster of 34 compounds that are the most representative of all PTB samples because contributing to the 85% of the total VOCs mass emissions. In the heatmap Fig. 6, the samples from the same month clustered together. Moreover, within each month, the samples split in two different clusters according to the stages already identified in the microbial analysis. The first cluster is composed by the samples of d1, d2 and d3 (1st stage) and the second cluster by the samples of d4, d5, and d6 (2nd stage). Looking at the differences in the days within each batch, the d1, d2 and d3 samples were richer in aliphatic hydrocarbons (heneicosane, hexadecane, tetradecane and 3-methyltridecane), alpha-terpineol, and estragole. By contrast, the d4, d5 and d6 samples were richer in 1-methylnaphthalene, nonanal, 2-nonanone, 3-octanol, m-xylene, 2,6-dimethylheptadecane and 2-ethyl-hexanol.
    Figure 6

    Heatmap and hierarchical clustering based on the normalized quantities of the identified VOCs, for PTB herbs in the six days (d1, d2, d3, d4, d5, and d6) and three months (July, August and October) of sampling. The highest content is in red and the lowest in blue. The values have been UV scaled and clustered according the Ward algorithm. The list of the 34 compounds highlighted in the upper side represents the most abundant (core) VOCs found. In July, d6 is missing as the sample has not been collected.

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    Cold weather increases the risk of scrotal torsion events: results of an ecological study of acute scrotal pain in Scotland over 25 years

    In this study we analysed data from monthly ASP episodes over a 25 year period to determine if there was a seasonal pattern of presentation. We found a seasonal variation in scrotal torsion events (TT and TA), with higher frequency in the colder months, and an inverse correlation between monthly frequency and ambient temperature. There was increased frequency of EO in March, May and October but no correlation with temperature.
    There has been interest in the seasonality of TT for many years6. Decreasing temperature causes increased contractility of the cremasteric muscles4,5, which may lead to an increase in the frequency of TT in colder months. Previous studies have yielded conflicting results3. Most of these studies reported case series of a relatively small number of patients (n = 39 to n = 2876). A large study from Brazil3 analysing 21,289 episodes of TT found seasonality of presentation with higher incidence in colder months, which was more significant in the more temperate regions than tropical regions of Brazil. A previous report from Dundee in Scotland showed an increased frequency of TT during the colder months from a series of 173 patients1. The present report is a larger study involving 33,855 episodes, of which 7882 had torsion events, and provides more robust evidence of seasonality of torsion.
    Seasonal variation in the frequency of EO has not previously been reported to our knowledge. We were unable to explain the increased frequency of EO in March, May and October within our dataset. Further epidemiological study will be required to elucidate the reasons. Possibilities to consider include sexual behaviour patterns of the male population.
    Limitations of this study include the use of data from a large public database with well reported advantages and disadvantages7, and the ecological fallacy, meaning that it may not be appropriate to apply these generalised population-based findings to individual patient care.
    We do not suggest, based on our findings, that the threshold for surgical exploration be raised for patients with ASP presenting during warmer months. Public health measures could be considered, for example encouraging the wearing of warm clothing and undergarments by young males during colder months may reduce the frequency of TT and TA, as the style of clothing could have a direct effect on scrotal temperature8.
    In conclusion, the findings of this large ecological study provide further robust evidence of seasonality of ASP, with the frequency of torsion events correlating negatively with ambient temperature. Further study is required to explain monthly variations in presentation of EO. More

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    New 12S metabarcoding primers for enhanced Neotropical freshwater fish biodiversity assessment

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