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      in Environment

      Four researchers with MIT ties earn Schmidt Science Fellowships

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      Four researchers with MIT ties — Juncal Arbelaiz, Xiangkun (Elvis) Cao, Sandya Subramanian, and Heather Zlotnick ’17 — have been honored with competitive Schmidt Science Fellowships.

      Created in 2017, the fellows program aims to bring together the world’s brightest minds “to solve society’s toughest challenges.”

      The four MIT-affiliated researchers are among 29 Schmidt Science Fellows from around the world who will receive postdoctoral support for either one or two years with an annual stipend of $100,000, along with individualized mentoring and participation in the program’s Global Meeting Series. The fellows will also have opportunities to engage with thought-leaders from science, business, policy, and society. According to the award announcement, the fellows are expected to pursue research that shifts from the focus of their PhDs, to help expand and enhance their futures as scientific leaders.

      Juncal Arbelaiz is a PhD candidate in applied mathematics at MIT, who is completing her doctorate this summer. Her doctoral research at MIT is advised by Ali Jadbabaie, the JR East Professor of Engineering and head of the Department of Civil and Environmental Engineering; Anette Hosoi, the Neil and Jane Pappalardo Professor of Mechanical Engineering and associate dean of the School of Engineering; and Bassam Bamieh, professor of mechanical engineering and associate director of the Center for Control, Dynamical Systems, and Computation at the University of California at Santa Barbara. Arbelaiz’s research revolves around the design of optimal decentralized intelligence for spatially-distributed dynamical systems.

      “I cannot think of a better way to start my independent scientific career. I feel very excited and grateful for this opportunity,” says Arbelaiz. With her fellowship, she will enlist systems biology to explore how the nervous system encodes and processes sensory information to address future safety-critical artificial intelligence applications. “The Schmidt Science Fellowship will provide me with a unique opportunity to work at the intersection of biological and machine intelligence for two years and will be a steppingstone towards my longer-term objective of becoming a researcher in bio-inspired machine intelligence,” she says.

      Xiangkun (Elvis) Cao is currently a postdoc in the lab of T. Alan Hatton, the Ralph Landau Professor in Chemical Engineering, and an Impact Fellow at the MIT Climate and Sustainability Consortium. Cao received his PhD in mechanical engineering from Cornell University in 2021, during which he focused on microscopic precision in the simultaneous delivery of light and fluids by optofluidics, with advances relevant to health and sustainability applications. As a Schmidt Science Fellow, he plans to be co-advised by Hatton on carbon capture, and Ted Sargent, professor of chemistry at Northwestern University, on carbon utilization. Cao is passionate about integrated carbon capture and utilization (CCU) from molecular to process levels, machine learning to inspire smart CCU, and the nexus of technology, business, and policy for CCU.

      “The Schmidt Science Fellowship provides the perfect opportunity for me to work across disciplines to study integrated carbon capture and utilization from molecular to process levels,” Cao explains. “My vision is that by integrating carbon capture and utilization, we can concurrently make scientific discoveries and unlock economic opportunities while mitigating global climate change. This way, we can turn our carbon liability into an asset.”

      Sandya Subramanian, a 2021 PhD graduate of the Harvard-MIT Program in Health Sciences and Technology (HST) in the area of medical engineering and medical physics, is currently a postdoc at Stanford Data Science. She is focused on the topics of biomedical engineering, statistics, machine learning, neuroscience, and health care. Her research is on developing new technologies and methods to study the interactions between the brain, the autonomic nervous system, and the gut. “I’m extremely honored to receive the Schmidt Science Fellowship and to join the Schmidt community of leaders and scholars,” says Subramanian. “I’ve heard so much about the fellowship and the fact that it can open doors and give people confidence to pursue challenging or unique paths.”

      According to Subramanian, the autonomic nervous system and its interactions with other body systems are poorly understood but thought to be involved in several disorders, such as functional gastrointestinal disorders, Parkinson’s disease, diabetes, migraines, and eating disorders. The goal of her research is to improve our ability to monitor and quantify these physiologic processes. “I’m really interested in understanding how we can use physiological monitoring technologies to inform clinical decision-making, especially around the autonomic nervous system, and I look forward to continuing the work that I’ve recently started at Stanford as Schmidt Science Fellow,” she says. “A huge thank you to all of the mentors, colleagues, friends, and leaders I had the pleasure of meeting and working with at HST and MIT; I couldn’t have done this without everything I learned there.”

      Hannah Zlotnick ’17 attended MIT for her undergraduate studies, majoring in biological engineering with a minor in mechanical engineering. At MIT, Zlotnick was a student-athlete on the women’s varsity soccer team, a UROP student in Alan Grodzinsky’s laboratory, and a member of Pi Beta Phi. For her PhD, Zlotnick attended the University of Pennsylvania, and worked in Robert Mauck’s laboratory within the departments of Bioengineering and Orthopaedic Surgery.

      Zlotnick’s PhD research focused on harnessing remote forces, such as magnetism or gravity, to enhance engineered cartilage and osteochondral repair both in vitro and in large animal models. Zlotnick now plans to pivot to the field of biofabrication to create tissue models of the knee joint to assess potential therapeutics for osteoarthritis. “I am humbled to be a part of the Schmidt Science Fellows community, and excited to venture into the field of biofabrication,” Zlotnick says. “Hopefully this work uncovers new therapies for patients with inflammatory joint diseases.” More

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      in Security

      From seawater to drinking water, with the push of a button

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      MIT researchers have developed a portable desalination unit, weighing less than 10 kilograms, that can remove particles and salts to generate drinking water.

      The suitcase-sized device, which requires less power to operate than a cell phone charger, can also be driven by a small, portable solar panel, which can be purchased online for around $50. It automatically generates drinking water that exceeds World Health Organization quality standards. The technology is packaged into a user-friendly device that runs with the push of one button.

      Unlike other portable desalination units that require water to pass through filters, this device utilizes electrical power to remove particles from drinking water. Eliminating the need for replacement filters greatly reduces the long-term maintenance requirements.

      This could enable the unit to be deployed in remote and severely resource-limited areas, such as communities on small islands or aboard seafaring cargo ships. It could also be used to aid refugees fleeing natural disasters or by soldiers carrying out long-term military operations.

      “This is really the culmination of a 10-year journey that I and my group have been on. We worked for years on the physics behind individual desalination processes, but pushing all those advances into a box, building a system, and demonstrating it in the ocean, that was a really meaningful and rewarding experience for me,” says senior author Jongyoon Han, a professor of electrical engineering and computer science and of biological engineering, and a member of the Research Laboratory of Electronics (RLE).

      Joining Han on the paper are first author Junghyo Yoon, a research scientist in RLE; Hyukjin J. Kwon, a former postdoc; SungKu Kang, a postdoc at Northeastern University; and Eric Brack of the U.S. Army Combat Capabilities Development Command (DEVCOM). The research has been published online in Environmental Science and Technology.

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      Filter-free technology

      Commercially available portable desalination units typically require high-pressure pumps to push water through filters, which are very difficult to miniaturize without compromising the energy-efficiency of the device, explains Yoon.

      Instead, their unit relies on a technique called ion concentration polarization (ICP), which was pioneered by Han’s group more than 10 years ago. Rather than filtering water, the ICP process applies an electrical field to membranes placed above and below a channel of water. The membranes repel positively or negatively charged particles — including salt molecules, bacteria, and viruses — as they flow past. The charged particles are funneled into a second stream of water that is eventually discharged.

      The process removes both dissolved and suspended solids, allowing clean water to pass through the channel. Since it only requires a low-pressure pump, ICP uses less energy than other techniques.

      But ICP does not always remove all the salts floating in the middle of the channel. So the researchers incorporated a second process, known as electrodialysis, to remove remaining salt ions.

      Yoon and Kang used machine learning to find the ideal combination of ICP and electrodialysis modules. The optimal setup includes a two-stage ICP process, with water flowing through six modules in the first stage then through three in the second stage, followed by a single electrodialysis process. This minimized energy usage while ensuring the process remains self-cleaning.

      “While it is true that some charged particles could be captured on the ion exchange membrane, if they get trapped, we just reverse the polarity of the electric field and the charged particles can be easily removed,” Yoon explains.

      They shrunk and stacked the ICP and electrodialysis modules to improve their energy efficiency and enable them to fit inside a portable device. The researchers designed the device for nonexperts, with just one button to launch the automatic desalination and purification process. Once the salinity level and the number of particles decrease to specific thresholds, the device notifies the user that the water is drinkable.

      The researchers also created a smartphone app that can control the unit wirelessly and report real-time data on power consumption and water salinity.

      Beach tests

      After running lab experiments using water with different salinity and turbidity (cloudiness) levels, they field-tested the device at Boston’s Carson Beach.

      Yoon and Kwon set the box near the shore and tossed the feed tube into the water. In about half an hour, the device had filled a plastic drinking cup with clear, drinkable water.

      “It was successful even in its first run, which was quite exciting and surprising. But I think the main reason we were successful is the accumulation of all these little advances that we made along the way,” Han says.

      The resulting water exceeded World Health Organization quality guidelines, and the unit reduced the amount of suspended solids by at least a factor of 10. Their prototype generates drinking water at a rate of 0.3 liters per hour, and requires only 20 watts of power per liter.

      “Right now, we are pushing our research to scale up that production rate,” Yoon says.

      One of the biggest challenges of designing the portable system was engineering an intuitive device that could be used by anyone, Han says.

      Yoon hopes to make the device more user-friendly and improve its energy efficiency and production rate through a startup he plans to launch to commercialize the technology.

      In the lab, Han wants to apply the lessons he’s learned over the past decade to water-quality issues that go beyond desalination, such as rapidly detecting contaminants in drinking water.

      “This is definitely an exciting project, and I am proud of the progress we have made so far, but there is still a lot of work to do,” he says.

      For example, while “development of portable systems using electro-membrane processes is an original and exciting direction in off-grid, small-scale desalination,” the effects of fouling, especially if the water has high turbidity, could significantly increase maintenance requirements and energy costs, notes Nidal Hilal, professor of engineering and director of the New York University Abu Dhabi Water research center, who was not involved with this research.

      “Another limitation is the use of expensive materials,” he adds. “It would be interesting to see similar systems with low-cost materials in place.”

      The research was funded, in part, by the DEVCOM Soldier Center, the Abdul Latif Jameel Water and Food Systems Lab (J-WAFS), the Experimental AI Postdoc Fellowship Program of Northeastern University, and the Roux AI Institute. More

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      in Environment

      Using plant biology to address climate change

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      On April 11, MIT announced five multiyear flagship projects in the first-ever Climate Grand Challenges, a new initiative to tackle complex climate problems and deliver breakthrough solutions to the world as quickly as possible. This article is the fourth in a five-part series highlighting the most promising concepts to emerge from the competition and the interdisciplinary research teams behind them.

      The impact of our changing climate on agriculture and food security — and how contemporary agriculture contributes to climate change — is at the forefront of MIT’s multidisciplinary project “Revolutionizing agriculture with low-emissions, resilient crops.” The project The project is one of five flagship winners in the Climate Grand Challenges competition, and brings together researchers from the departments of Biology, Biological Engineering, Chemical Engineering, and Civil and Environmental Engineering.

      “Our team’s research seeks to address two connected challenges: first, the need to reduce the greenhouse gas emissions produced by agricultural fertilizer; second, the fact that the yields of many current agricultural crops will decrease, due to the effects of climate change on plant metabolism,” says the project’s faculty lead, Christopher Voigt, the Daniel I.C. Wang Professor in MIT’s Department of Biological Engineering. “We are pursuing six interdisciplinary projects that are each key to our overall goal of developing low-emissions methods for fertilizing plants that are bioengineered to be more resilient and productive in a changing climate.”

      Whitehead Institute members Mary Gehring and Jing-Ke Weng, plant biologists who are also associate professors in MIT’s Department of Biology, will lead two of those projects.

      Promoting crop resilience

      For most of human history, climate change occurred gradually, over hundreds or thousands of years. That pace allowed plants to adapt to variations in temperature, precipitation, and atmospheric composition. However, human-driven climate change has occurred much more quickly, and crop plants have suffered: Crop yields are down in many regions, as is seed protein content in cereal crops.

      “If we want to ensure an abundant supply of nutritious food for the world, we need to develop fundamental mechanisms for bioengineering a wide variety of crop plants that will be both hearty and nutritious in the face of our changing climate,” says Gehring. In her previous work, she has shown that many aspects of plant reproduction and seed development are controlled by epigenetics — that is, by information outside of the DNA sequence. She has been using that knowledge and the research methods she has developed to identify ways to create varieties of seed-producing plants that are more productive and resilient than current food crops.

      But plant biology is complex, and while it is possible to develop plants that integrate robustness-enhancing traits by combining dissimilar parental strains, scientists are still learning how to ensure that the new traits are carried forward from one generation to the next. “Plants that carry the robustness-enhancing traits have ‘hybrid vigor,’ and we believe that the perpetuation of those traits is controlled by epigenetics,” Gehring explains. “Right now, some food crops, like corn, can be engineered to benefit from hybrid vigor, but those traits are not inherited. That’s why farmers growing many of today’s most productive varieties of corn must purchase and plant new batches of seeds each year. Moreover, many important food crops have not yet realized the benefits of hybrid vigor.”

      The project Gehring leads, “Developing Clonal Seed Production to Fix Hybrid Vigor,” aims to enable food crop plants to create seeds that are both more robust and genetically identical to the parent — and thereby able to pass beneficial traits from generation to generation.

      The process of clonal (or asexual) production of seeds that are genetically identical to the maternal parent is called apomixis. Gehring says, “Because apomixis is present in 400 flowering plant species — about 1 percent of flowering plant species — it is probable that genes and signaling pathways necessary for apomixis are already present within crop plants. Our challenge is to tweak those genes and pathways so that the plant switches reproduction from sexual to asexual.”

      The project will leverage the fact that genes and pathways related to autonomous asexual development of the endosperm — a seed’s nutritive tissue — exist in the model plant Arabidopsis thaliana. In previous work on Arabidopsis, Gehring’s lab researched a specific gene that, when misregulated, drives development of an asexual endosperm-like material. “Normally, that seed would not be viable,” she notes. “But we believe that by epigenetic tuning of the expression of additional relevant genes, we will enable the plant to retain that material — and help achieve apomixis.”

      If Gehring and her colleagues succeed in creating a gene-expression “formula” for introducing endosperm apomixis into a wide range of crop plants, they will have made a fundamental and important achievement. Such a method could be applied throughout agriculture to create and perpetuate new crop breeds able to withstand their changing environments while requiring less fertilizer and fewer pesticides.

      Creating “self-fertilizing” crops

      Roughly a quarter of greenhouse gas (GHG) emissions in the United States are a product of agriculture. Fertilizer production and use accounts for one third of those emissions and includes nitrous oxide, which has heat-trapping capacity 298-fold stronger than carbon dioxide, according to a 2018 Frontiers in Plant Science study. Most artificial fertilizer production also consumes huge quantities of natural gas and uses minerals mined from nonrenewable resources. After all that, much of the nitrogen fertilizer becomes runoff that pollutes local waterways. For those reasons, this Climate Grand Challenges flagship project aims to greatly reduce use of human-made fertilizers.

      One tantalizing approach is to cultivate cereal crop plants — which account for about 75 percent of global food production — capable of drawing nitrogen from metabolic interactions with bacteria in the soil. Whitehead Institute’s Weng leads an effort to do just that: genetically bioengineer crops such as corn, rice, and wheat to, essentially, create their own fertilizer through a symbiotic relationship with nitrogen-fixing microbes.

      “Legumes such as bean and pea plants can form root nodules through which they receive nitrogen from rhizobia bacteria in exchange for carbon,” Weng explains. “This metabolic exchange means that legumes release far less greenhouse gas — and require far less investment of fossil energy — than do cereal crops, which use a huge portion of the artificially produced nitrogen fertilizers employed today.

      “Our goal is to develop methods for transferring legumes’ ‘self-fertilizing’ capacity to cereal crops,” Weng says. “If we can, we will revolutionize the sustainability of food production.”

      The project — formally entitled “Mimicking legume-rhizobia symbiosis for fertilizer production in cereals” — will be a multistage, five-year effort. It draws on Weng’s extensive studies of metabolic evolution in plants and his identification of molecules involved in formation of the root nodules that permit exchanges between legumes and nitrogen-fixing bacteria. It also leverages his expertise in reconstituting specific signaling and metabolic pathways in plants.

      Weng and his colleagues will begin by deciphering the full spectrum of small-molecule signaling processes that occur between legumes and rhizobium bacteria. Then they will genetically engineer an analogous system in nonlegume crop plants. Next, using state-of-the-art metabolomic methods, they will identify which small molecules excreted from legume roots prompt a nitrogen/carbon exchange from rhizobium bacteria. Finally, the researchers will genetically engineer the biosynthesis of those molecules in the roots of nonlegume plants and observe their effect on the rhizobium bacteria surrounding the roots.

      While the project is complex and technically challenging, its potential is staggering. “Focusing on corn alone, this could reduce the production and use of nitrogen fertilizer by 160,000 tons,” Weng notes. “And it could halve the related emissions of nitrous oxide gas.” More

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      in Security

      Structures considered key to gene expression are surprisingly fleeting

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      In human chromosomes, DNA is coated by proteins to form an exceedingly long beaded string. This “string” is folded into numerous loops, which are believed to help cells control gene expression and facilitate DNA repair, among other functions. A new study from MIT suggests that these loops are very dynamic and shorter-lived than previously thought.

      In the new study, the researchers were able to monitor the movement of one stretch of the genome in a living cell for about two hours. They saw that this stretch was fully looped for only 3 to 6 percent of the time, with the loop lasting for only about 10 to 30 minutes. The findings suggest that scientists’ current understanding of how loops influence gene expression may need to be revised, the researchers say.

      “Many models in the field have been these pictures of static loops regulating these processes. What our new paper shows is that this picture is not really correct,” says Anders Sejr Hansen, the Underwood-Prescott Career Development Assistant Professor of Biological Engineering at MIT. “We suggest that the functional state of these domains is much more dynamic.”

      Hansen is one of the senior authors of the new study, along with Leonid Mirny, a professor in MIT’s Institute for Medical Engineering and Science and the Department of Physics, and Christoph Zechner, a group leader at the Max Planck Institute of Molecular Cell Biology and Genetics in Dresden, Germany, and the Center for Systems Biology Dresden. MIT postdoc Michele Gabriele, recent Harvard University PhD recipient Hugo Brandão, and MIT graduate student Simon Grosse-Holz are the lead authors of the paper, which appears today in Science.

      Out of the loop

      Using computer simulations and experimental data, scientists including Mirny’s group at MIT have shown that loops in the genome are formed by a process called extrusion, in which a molecular motor promotes the growth of progressively larger loops. The motor stops each time it encounters a “stop sign” on DNA. The motor that extrudes such loops is a protein complex called cohesin, while the DNA-bound protein CTCF serves as the stop sign. These cohesin-mediated loops between CTCF sites were seen in previous experiments.

      However, those experiments only offered a snapshot of a moment in time, with no information on how the loops change over time. In their new study, the researchers developed techniques that allowed them to fluorescently label CTCF DNA sites so they could image the DNA loops over several hours. They also created a new computational method that can infer the looping events from the imaging data.

      “This method was crucial for us to distinguish signal from noise in our experimental data and quantify looping,” Zechner says. “We believe that such approaches will become increasingly important for biology as we continue to push the limits of detection with experiments.”

      The researchers used their method to image a stretch of the genome in mouse embryonic stem cells. “If we put our data in the context of one cell division cycle, which lasts about 12 hours, the fully formed loop only actually exists for about 20 to 45 minutes, or about 3 to 6 percent of the time,” Grosse-Holz says.

      “If the loop is only present for such a tiny period of the cell cycle and very short-lived, we shouldn’t think of this fully looped state as being the primary regulator of gene expression,” Hansen says. “We think we need new models for how the 3D structure of the genome regulates gene expression, DNA repair, and other functional downstream processes.”

      While fully formed loops were rare, the researchers found that partially extruded loops were present about 92 percent of the time. These smaller loops have been difficult to observe with the previous methods of detecting loops in the genome.

      “In this study, by integrating our experimental data with polymer simulations, we have now been able to quantify the relative extents of the unlooped, partially extruded, and fully looped states,” Brandão says.

      “Since these interactions are very short, but very frequent, the previous methodologies were not able to fully capture their dynamics,” Gabriele adds. “With our new technique, we can start to resolve transitions between fully looped and unlooped states.”

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      The researchers hypothesize that these partial loops may play more important roles in gene regulation than fully formed loops. Strands of DNA run along each other as loops begin to form and then fall apart, and these interactions may help regulatory elements such as enhancers and gene promoters find each other.

      “More than 90 percent of the time, there are some transient loops, and presumably what’s important is having those loops that are being perpetually extruded,” Mirny says. “The process of extrusion itself may be more important than the fully looped state that only occurs for a short period of time.”

      More loops to study

      Since most of the other loops in the genome are weaker than the one the researchers studied in this paper, they suspect that many other loops will also prove to be highly transient. They now plan to use their new technique study some of those other loops, in a variety of cell types.

      “There are about 10,000 of these loops, and we’ve looked at one,” Hansen says. “We have a lot of indirect evidence to suggest that the results would be generalizable, but we haven’t demonstrated that. Using the technology platform we’ve set up, which combines new experimental and computational methods, we can begin to approach other loops in the genome.”

      The researchers also plan to investigate the role of specific loops in disease. Many diseases, including a neurodevelopmental disorder called FOXG1 syndrome, could be linked to faulty loop dynamics. The researchers are now studying how both the normal and mutated form of the FOXG1 gene, as well as the cancer-causing gene MYC, are affected by genome loop formation.

      The research was funded by the National Institutes of Health, the National Science Foundation, the Mathers Foundation, a Pew-Stewart Cancer Research Scholar grant, the Chaires d’excellence Internationale Blaise Pascal, an American-Italian Cancer Foundation research scholarship, and the Max Planck Institute for Molecular Cell Biology and Genetics. More

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      in Energy

      MIT announces five flagship projects in first-ever Climate Grand Challenges competition

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      MIT today announced the five flagship projects selected in its first-ever Climate Grand Challenges competition. These multiyear projects will define a dynamic research agenda focused on unraveling some of the toughest unsolved climate problems and bringing high-impact, science-based solutions to the world on an accelerated basis.

      Representing the most promising concepts to emerge from the two-year competition, the five flagship projects will receive additional funding and resources from MIT and others to develop their ideas and swiftly transform them into practical solutions at scale.

      “Climate Grand Challenges represents a whole-of-MIT drive to develop game-changing advances to confront the escalating climate crisis, in time to make a difference,” says MIT President L. Rafael Reif. “We are inspired by the creativity and boldness of the flagship ideas and by their potential to make a significant contribution to the global climate response. But given the planet-wide scale of the challenge, success depends on partnership. We are eager to work with visionary leaders in every sector to accelerate this impact-oriented research, implement serious solutions at scale, and inspire others to join us in confronting this urgent challenge for humankind.”

      Brief descriptions of the five Climate Grand Challenges flagship projects are provided below.

      Bringing Computation to the Climate Challenge

      This project leverages advances in artificial intelligence, machine learning, and data sciences to improve the accuracy of climate models and make them more useful to a variety of stakeholders — from communities to industry. The team is developing a digital twin of the Earth that harnesses more data than ever before to reduce and quantify uncertainties in climate projections.

      Research leads: Raffaele Ferrari, the Cecil and Ida Green Professor of Oceanography in the Department of Earth, Atmospheric and Planetary Sciences, and director of the Program in Atmospheres, Oceans, and Climate; and Noelle Eckley Selin, director of the Technology and Policy Program and professor with a joint appointment in the Institute for Data, Systems, and Society and the Department of Earth, Atmospheric and Planetary Sciences

      Center for Electrification and Decarbonization of Industry

      This project seeks to reinvent and electrify the processes and materials behind hard-to-decarbonize industries like steel, cement, ammonia, and ethylene production. A new innovation hub will perform targeted fundamental research and engineering with urgency, pushing the technological envelope on electricity-driven chemical transformations.

      Research leads: Yet-Ming Chiang, the Kyocera Professor of Materials Science and Engineering, and Bilge Yıldız, the Breene M. Kerr Professor in the Department of Nuclear Science and Engineering and professor in the Department of Materials Science and Engineering

      Preparing for a new world of weather and climate extremes

      This project addresses key gaps in knowledge about intensifying extreme events such as floods, hurricanes, and heat waves, and quantifies their long-term risk in a changing climate. The team is developing a scalable climate-change adaptation toolkit to help vulnerable communities and low-carbon energy providers prepare for these extreme weather events.

      Research leads: Kerry Emanuel, the Cecil and Ida Green Professor of Atmospheric Science in the Department of Earth, Atmospheric and Planetary Sciences and co-director of the MIT Lorenz Center; Miho Mazereeuw, associate professor of architecture and urbanism in the Department of Architecture and director of the Urban Risk Lab; and Paul O’Gorman, professor in the Program in Atmospheres, Oceans, and Climate in the Department of Earth, Atmospheric and Planetary Sciences

      The Climate Resilience Early Warning System

      The CREWSnet project seeks to reinvent climate change adaptation with a novel forecasting system that empowers underserved communities to interpret local climate risk, proactively plan for their futures incorporating resilience strategies, and minimize losses. CREWSnet will initially be demonstrated in southwestern Bangladesh, serving as a model for similarly threatened regions around the world.

      Research leads: John Aldridge, assistant leader of the Humanitarian Assistance and Disaster Relief Systems Group at MIT Lincoln Laboratory, and Elfatih Eltahir, the H.M. King Bhumibol Professor of Hydrology and Climate in the Department of Civil and Environmental Engineering

      Revolutionizing agriculture with low-emissions, resilient crops

      This project works to revolutionize the agricultural sector with climate-resilient crops and fertilizers that have the ability to dramatically reduce greenhouse gas emissions from food production.

      Research lead: Christopher Voigt, the Daniel I.C. Wang Professor in the Department of Biological Engineering

      “As one of the world’s leading institutions of research and innovation, it is incumbent upon MIT to draw on our depth of knowledge, ingenuity, and ambition to tackle the hard climate problems now confronting the world,” says Richard Lester, MIT associate provost for international activities. “Together with collaborators across industry, finance, community, and government, the Climate Grand Challenges teams are looking to develop and implement high-impact, path-breaking climate solutions rapidly and at a grand scale.”

      The initial call for ideas in 2020 yielded nearly 100 letters of interest from almost 400 faculty members and senior researchers, representing 90 percent of MIT departments. After an extensive evaluation, 27 finalist teams received a total of $2.7 million to develop comprehensive research and innovation plans. The projects address four broad research themes:

      To select the winning projects, research plans were reviewed by panels of international experts representing relevant scientific and technical domains as well as experts in processes and policies for innovation and scalability.

      “In response to climate change, the world really needs to do two things quickly: deploy the solutions we already have much more widely, and develop new solutions that are urgently needed to tackle this intensifying threat,” says Maria Zuber, MIT vice president for research. “These five flagship projects exemplify MIT’s strong determination to bring its knowledge and expertise to bear in generating new ideas and solutions that will help solve the climate problem.”

      “The Climate Grand Challenges flagship projects set a new standard for inclusive climate solutions that can be adapted and implemented across the globe,” says MIT Chancellor Melissa Nobles. “This competition propels the entire MIT research community — faculty, students, postdocs, and staff — to act with urgency around a worsening climate crisis, and I look forward to seeing the difference these projects can make.”

      “MIT’s efforts on climate research amid the climate crisis was a primary reason that I chose to attend MIT, and remains a reason that I view the Institute favorably. MIT has a clear opportunity to be a thought leader in the climate space in our own MIT way, which is why CGC fits in so well,” says senior Megan Xu, who served on the Climate Grand Challenges student committee and is studying ways to make the food system more sustainable.

      The Climate Grand Challenges competition is a key initiative of “Fast Forward: MIT’s Climate Action Plan for the Decade,” which the Institute published in May 2021. Fast Forward outlines MIT’s comprehensive plan for helping the world address the climate crisis. It consists of five broad areas of action: sparking innovation, educating future generations, informing and leveraging government action, reducing MIT’s own climate impact, and uniting and coordinating all of MIT’s climate efforts. More

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      in Environment

      Setting carbon management in stone

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      Keeping global temperatures within limits deemed safe by the Intergovernmental Panel on Climate Change means doing more than slashing carbon emissions. It means reversing them.

      “If we want to be anywhere near those limits [of 1.5 or 2 C], then we have to be carbon neutral by 2050, and then carbon negative after that,” says Matěj Peč, a geoscientist and the Victor P. Starr Career Development Assistant Professor in the Department of Earth, Atmospheric, and Planetary Sciences (EAPS).

      Going negative will require finding ways to radically increase the world’s capacity to capture carbon from the atmosphere and put it somewhere where it will not leak back out. Carbon capture and storage projects already suck in tens of million metric tons of carbon each year. But putting a dent in emissions will mean capturing many billions of metric tons more. Today, people emit around 40 billion tons of carbon each year globally, mainly by burning fossil fuels.

      Because of the need for new ideas when it comes to carbon storage, Peč has created a proposal for the MIT Climate Grand Challenges competition — a bold and sweeping effort by the Institute to support paradigm-shifting research and innovation to address the climate crisis. Called the Advanced Carbon Mineralization Initiative, his team’s proposal aims to bring geologists, chemists, and biologists together to make permanently storing carbon underground workable under different geological conditions. That means finding ways to speed-up the process by which carbon pumped underground is turned into rock, or mineralized.

      “That’s what the geology has to offer,” says Peč, who is a lead on the project, along with Ed Boyden, professor of biological engineering, brain and cognitive sciences, and media arts and sciences, and Yogesh Surendranath, professor of chemistry. “You look for the places where you can safely and permanently store these huge volumes of CO2.”

      Peč‘s proposal is one of 27 finalists selected from a pool of almost 100 Climate Grand Challenge proposals submitted by collaborators from across the Institute. Each finalist team received $100,000 to further develop their research proposals. A subset of finalists will be announced in April, making up a portfolio of multiyear “flagship” projects receiving additional funding and support.

      Building industries capable of going carbon negative presents huge technological, economic, environmental, and political challenges. For one, it’s expensive and energy-intensive to capture carbon from the air with existing technologies, which are “hellishly complicated,” says Peč. Much of the carbon capture underway today focuses on more concentrated sources like coal- or gas-burning power plants.

      It’s also difficult to find geologically suitable sites for storage. To keep it in the ground after it has been captured, carbon must either be trapped in airtight reservoirs or turned to stone.

      One of the best places for carbon capture and storage (CCS) is Iceland, where a number of CCS projects are up and running. The island’s volcanic geology helps speed up the mineralization process, as carbon pumped underground interacts with basalt rock at high temperatures. In that ideal setting, says Peč, 95 percent of carbon injected underground is mineralized after just two years — a geological flash.

      But Iceland’s geology is unusual. Elsewhere requires deeper drilling to reach suitable rocks at suitable temperature, which adds costs to already expensive projects. Further, says Peč, there’s not a complete understanding of how different factors influence the speed of mineralization.

      Peč‘s Climate Grand Challenge proposal would study how carbon mineralizes under different conditions, as well as explore ways to make mineralization happen more rapidly by mixing the carbon dioxide with different fluids before injecting it underground. Another idea — and the reason why there are biologists on the team — is to learn from various organisms adept at turning carbon into calcite shells, the same stuff that makes up limestone.

      Two other carbon management proposals, led by EAPS Cecil and Ida Green Professor Bradford Hager, were also selected as Climate Grand Challenge finalists. They focus on both the technologies necessary for capturing and storing gigatons of carbon as well as the logistical challenges involved in such an enormous undertaking.

      That involves everything from choosing suitable sites for storage, to regulatory and environmental issues, as well as how to bring disparate technologies together to improve the whole pipeline. The proposals emphasize CCS systems that can be powered by renewable sources, and can respond dynamically to the needs of different hard-to-decarbonize industries, like concrete and steel production.

      “We need to have an industry that is on the scale of the current oil industry that will not be doing anything but pumping CO2 into storage reservoirs,” says Peč.

      For a problem that involves capturing enormous amounts of gases from the atmosphere and storing it underground, it’s no surprise EAPS researchers are so involved. The Earth sciences have “everything” to offer, says Peč, including the good news that the Earth has more than enough places where carbon might be stored.

      “Basically, the Earth is really, really large,” says Peč. “The reasonably accessible places, which are close to the continents, store somewhere on the order of tens of thousands to hundreds thousands of gigatons of carbon. That’s orders of magnitude more than we need to put back in.” More

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      Q&A: Climate Grand Challenges finalists on accelerating reductions in global greenhouse gas emissions

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      This is the second article in a four-part interview series highlighting the work of the 27 MIT Climate Grand Challenges finalists, which received a total of $2.7 million in startup funding to advance their projects. In April, the Institute will name a subset of the finalists as multiyear flagship projects.

      Last month, the Intergovernmental Panel on Climate Change (IPCC), an expert body of the United Nations representing 195 governments, released its latest scientific report on the growing threats posed by climate change, and called for drastic reductions in greenhouse gas emissions to avert the most catastrophic outcomes for humanity and natural ecosystems.

      Bringing the global economy to net-zero carbon dioxide emissions by midcentury is complex and demands new ideas and novel approaches. The first-ever MIT Climate Grand Challenges competition focuses on four problem areas including removing greenhouse gases from the atmosphere and identifying effective, economic solutions for managing and storing these gases. The other Climate Grand Challenges research themes address using data and science to forecast climate-related risk, decarbonizing complex industries and processes, and building equity and fairness into climate solutions.

      In the following conversations prepared for MIT News, faculty from three of the teams working to solve “Removing, managing, and storing greenhouse gases” explain how they are drawing upon geological, biological, chemical, and oceanic processes to develop game-changing techniques for carbon removal, management, and storage. Their responses have been edited for length and clarity.

      Directed evolution of biological carbon fixation

      Agricultural demand is estimated to increase by 50 percent in the coming decades, while climate change is simultaneously projected to drastically reduce crop yield and predictability, requiring a dramatic acceleration of land clearing. Without immediate intervention, this will have dire impacts on wild habitat, rob the livelihoods of hundreds of millions of subsistence farmers, and create hundreds of gigatons of new emissions. Matthew Shoulders, associate professor in the Department of Chemistry, talks about the working group he is leading in partnership with Ed Boyden, the Y. Eva Tan professor of neurotechnology and Howard Hughes Medical Institute investigator at the McGovern Institute for Brain Research, that aims to massively reduce carbon emissions from agriculture by relieving core biochemical bottlenecks in the photosynthetic process using the most sophisticated synthetic biology available to science.

      Q: Describe the two pathways you have identified for improving agricultural productivity and climate resiliency.

      A: First, cyanobacteria grow millions of times faster than plants and dozens of times faster than microalgae. Engineering these cyanobacteria as a source of key food products using synthetic biology will enable food production using less land, in a fundamentally more climate-resilient manner. Second, carbon fixation, or the process by which carbon dioxide is incorporated into organic compounds, is the rate-limiting step of photosynthesis and becomes even less efficient under rising temperatures. Enhancements to Rubisco, the enzyme mediating this central process, will both improve crop yields and provide climate resilience to crops needed by 2050. Our team, led by Robbie Wilson and Max Schubert, has created new directed evolution methods tailored for both strategies, and we have already uncovered promising early results. Applying directed evolution to photosynthesis, carbon fixation, and food production has the potential to usher in a second green revolution.

      Q: What partners will you need to accelerate the development of your solutions?

      A: We have already partnered with leading agriculture institutes with deep experience in plant transformation and field trial capacity, enabling the integration of our improved carbon-dioxide-fixing enzymes into a wide range of crop plants. At the deployment stage, we will be positioned to partner with multiple industry groups to achieve improved agriculture at scale. Partnerships with major seed companies around the world will be key to leverage distribution channels in manufacturing supply chains and networks of farmers, agronomists, and licensed retailers. Support from local governments will also be critical where subsidies for seeds are necessary for farmers to earn a living, such as smallholder and subsistence farming communities. Additionally, our research provides an accessible platform that is capable of enabling and enhancing carbon dioxide sequestration in diverse organisms, extending our sphere of partnership to a wide range of companies interested in industrial microbial applications, including algal and cyanobacterial, and in carbon capture and storage.

      Strategies to reduce atmospheric methane

      One of the most potent greenhouse gases, methane is emitted by a range of human activities and natural processes that include agriculture and waste management, fossil fuel production, and changing land use practices — with no single dominant source. Together with a diverse group of faculty and researchers from the schools of Humanities, Arts, and Social Sciences; Architecture and Planning; Engineering; and Science; plus the MIT Schwarzman College of Computing, Desiree Plata, associate professor in the Department of Civil and Environmental Engineering, is spearheading the MIT Methane Network, an integrated approach to formulating scalable new technologies, business models, and policy solutions for driving down levels of atmospheric methane.

      Q: What is the problem you are trying to solve and why is it a “grand challenge”?

      A: Removing methane from the atmosphere, or stopping it from getting there in the first place, could change the rates of global warming in our lifetimes, saving as much as half a degree of warming by 2050. Methane sources are distributed in space and time and tend to be very dilute, making the removal of methane a challenge that pushes the boundaries of contemporary science and engineering capabilities. Because the primary sources of atmospheric methane are linked to our economy and culture — from clearing wetlands for cultivation to natural gas extraction and dairy and meat production — the social and economic implications of a fundamentally changed methane management system are far-reaching. Nevertheless, these problems are tractable and could significantly reduce the effects of climate change in the near term.

      Q: What is known about the rapid rise in atmospheric methane and what questions remain unanswered?

      A: Tracking atmospheric methane is a challenge in and of itself, but it has become clear that emissions are large, accelerated by human activity, and cause damage right away. While some progress has been made in satellite-based measurements of methane emissions, there is a need to translate that data into actionable solutions. Several key questions remain around improving sensor accuracy and sensor network design to optimize placement, improve response time, and stop leaks with autonomous controls on the ground. Additional questions involve deploying low-level methane oxidation systems and novel catalytic materials at coal mines, dairy barns, and other enriched sources; evaluating the policy strategies and the socioeconomic impacts of new technologies with an eye toward decarbonization pathways; and scaling technology with viable business models that stimulate the economy while reducing greenhouse gas emissions.

      Deploying versatile carbon capture technologies and storage at scale

      There is growing consensus that simply capturing current carbon dioxide emissions is no longer sufficient — it is equally important to target distributed sources such as the oceans and air where carbon dioxide has accumulated from past emissions. Betar Gallant, the American Bureau of Shipping Career Development Associate Professor of Mechanical Engineering, discusses her work with Bradford Hager, the Cecil and Ida Green Professor of Earth Sciences in the Department of Earth, Atmospheric and Planetary Sciences, and T. Alan Hatton, the Ralph Landau Professor of Chemical Engineering and director of the School of Chemical Engineering Practice, to dramatically advance the portfolio of technologies available for carbon capture and permanent storage at scale. (A team led by Assistant Professor Matěj Peč of EAPS is also addressing carbon capture and storage.)

      Q: Carbon capture and storage processes have been around for several decades. What advances are you seeking to make through this project?

      A: Today’s capture paradigms are costly, inefficient, and complex. We seek to address this challenge by developing a new generation of capture technologies that operate using renewable energy inputs, are sufficiently versatile to accommodate emerging industrial demands, are adaptive and responsive to varied societal needs, and can be readily deployed to a wider landscape.

      New approaches will require the redesign of the entire capture process, necessitating basic science and engineering efforts that are broadly interdisciplinary in nature. At the same time, incumbent technologies have been optimized largely for integration with coal- or natural gas-burning power plants. Future applications must shift away from legacy emitters in the power sector towards hard-to-mitigate sectors such as cement, iron and steel, chemical, and hydrogen production. It will become equally important to develop and optimize systems targeted for much lower concentrations of carbon dioxide, such as in oceans or air. Our effort will expand basic science studies as well as human impacts of storage, including how public engagement and education can alter attitudes toward greater acceptance of carbon dioxide geologic storage.

      Q: What are the expected impacts of your proposed solution, both positive and negative?

      A: Renewable energy cannot be deployed rapidly enough everywhere, nor can it supplant all emissions sources, nor can it account for past emissions. Carbon capture and storage (CCS) provides a demonstrated method to address emissions that will undoubtedly occur before the transition to low-carbon energy is completed. CCS can succeed even if other strategies fail. It also allows for developing nations, which may need to adopt renewables over longer timescales, to see equitable economic development while avoiding the most harmful climate impacts. And, CCS enables the future viability of many core industries and transportation modes, many of which do not have clear alternatives before 2050, let alone 2040 or 2030.

      The perceived risks of potential leakage and earthquakes associated with geologic storage can be minimized by choosing suitable geologic formations for storage. Despite CCS providing a well-understood pathway for removing enough of the carbon dioxide already emitted into the atmosphere, some environmentalists vigorously oppose it, fearing that CCS rewards oil companies and disincentivizes the transition away from fossil fuels. We believe that it is more important to keep in mind the necessity of meeting key climate targets for the sake of the planet, and welcome those who can help. More

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      in Security

      Meet the 2021-22 Accenture Fellows

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      Launched in October of 2020, the MIT and Accenture Convergence Initiative for Industry and Technology underscores the ways in which industry and technology come together to spur innovation. The five-year initiative aims to achieve its mission through research, education, and fellowships. To that end, Accenture has once again awarded five annual fellowships to MIT graduate students working on research in industry and technology convergence who are underrepresented, including by race, ethnicity, and gender.

      This year’s Accenture Fellows work across disciplines including robotics, manufacturing, artificial intelligence, and biomedicine. Their research covers a wide array of subjects, including: advancing manufacturing through computational design, with the potential to benefit global vaccine production; designing low-energy robotics for both consumer electronics and the aerospace industry; developing robotics and machine learning systems that may aid the elderly in their homes; and creating ingestible biomedical devices that can help gather medical data from inside a patient’s body.

      Student nominations from each unit within the School of Engineering, as well as from the four other MIT schools and the MIT Schwarzman College of Computing, were invited as part of the application process. Five exceptional students were selected as fellows in the initiative’s second year.

      Xinming (Lily) Liu is a PhD student in operations research at MIT Sloan School of Management. Her work is focused on behavioral and data-driven operations for social good, incorporating human behaviors into traditional optimization models, designing incentives, and analyzing real-world data. Her current research looks at the convergence of social media, digital platforms, and agriculture, with particular attention to expanding technological equity and economic opportunity in developing countries. Liu earned her BS from Cornell University, with a double major in operations research and computer science.

      Caris Moses is a PhD student in electrical engineering and computer science specializing inartificial intelligence. Moses’ research focuses on using machine learning, optimization, and electromechanical engineering to build robotics systems that are robust, flexible, intelligent, and can learn on the job. The technology she is developing holds promise for industries including flexible, small-batch manufacturing; robots to assist the elderly in their households; and warehouse management and fulfillment. Moses earned her BS in mechanical engineering from Cornell University and her MS in computer science from Northeastern University.

      Sergio Rodriguez Aponte is a PhD student in biological engineering. He is working on the convergence of computational design and manufacturing practices, which have the potential to impact industries such as biopharmaceuticals, food, and wellness/nutrition. His current research aims to develop strategies for applying computational tools, such as multiscale modeling and machine learning, to the design and production of manufacturable and accessible vaccine candidates that could eventually be available globally. Rodriguez Aponte earned his BS in industrial biotechnology from the University of Puerto Rico at Mayaguez.

      Soumya Sudhakar SM ’20 is a PhD student in aeronautics and astronautics. Her work is focused on theco-design of new algorithms and integrated circuits for autonomous low-energy robotics that could have novel applications in aerospace and consumer electronics. Her contributions bring together the emerging robotics industry, integrated circuits industry, aerospace industry, and consumer electronics industry. Sudhakar earned her BSE in mechanical and aerospace engineering from Princeton University and her MS in aeronautics and astronautics from MIT.

      So-Yoon Yang is a PhD student in electrical engineering and computer science. Her work on the development of low-power, wireless, ingestible biomedical devices for health care is at the intersection of the medical device, integrated circuit, artificial intelligence, and pharmaceutical fields. Currently, the majority of wireless biomedical devices can only provide a limited range of medical data measured from outside the body. Ingestible devices hold promise for the next generation of personal health care because they do not require surgical implantation, can be useful for detecting physiological and pathophysiological signals, and can also function as therapeutic alternatives when treatment cannot be done externally. Yang earned her BS in electrical and computer engineering from Seoul National University in South Korea and her MS in electrical engineering from Caltech. More