Fahrig, L. Effects of habitat fragmentation on biodiversity. Ann. Rev. Ecol. Evol. Syst. 34, 487–515 (2003).
Foley, J. A. et al. Global consequences of land use. Science 309, 570–574 (2005).
Nee, S. & May, R. M. Dynamics of metapopulations: Habitat destruction and competitive coexistence. J. Anim. Ecol. 1, 37–40 (1992).
Petit, S., Moilanen, A., Hanski, I. & Baguette, M. Metapopulation dynamics of the bog fritillary butterfly: Movements between habitat patches. Oikos 292, 491–500 (2001).
Munday, P. L. Does habitat availability determine geographical-scale abundances of coral-dwelling fishes?. Coral Reefs 21, 105–116 (2002).
Wong, M. Y., Fauvelot, C., Planes, S. & Buston, P. M. Discrete and continuous reproductive tactics in a hermaphroditic society. Anim. Behav. 84, 897–906 (2012).
Chase, T. J., Pratchett, M. S., Walker, S. P. & Hoogenboom, M. O. Small-scale environmental variation influences whether coral-dwelling fish promote or impede coral growth. Oecologia 176, 1009–1022 (2014).
Kuwamura, T., Yogo, Y. & Nakashima, Y. Population dynamics of goby Paragobiodon echinocephalus and host coral Stylophora pistillata. Mar. Ecol. Prog. Ser. 6, 17–23 (1994).
Holbrook, S. J., Forrester, G. E. & Schmitt, R. J. Spatial patterns in abundance of a damselfish reflect availability of suitable habitat. Oecologia 122, 109–120 (2000).
Boström-Einarsson, L., Bonin, M. C., Munday, P. L. & Jones, G. P. Strong intraspecific competition and habitat selectivity influence abundance of a coral-dwelling damselfish. J. Exp. Mar. Biol. Ecol. 448, 85–92 (2013).
Munday, P. L. Habitat loss, resource specialization, and extinction on coral reefs. Glob. Change Biol. 10, 1642–1647 (2004).
Wilson, S. K. et al. Habitat utilization by coral reef fish: Implications for specialists vs. generalists in a changing environment. J. Anim. Ecol. 77, 220–228 (2008).
Emslie, M. J., Cheal, A. J. & Johns, K. A. Retention of habitat complexity minimizes disassembly of reef fish communities following disturbance: A large-scale natural experiment. PLoS ONE 9, e105384. https://doi.org/10.1371/journal.pone.0105384 (2014).
Bellwood, D. R. et al. Coral recovery may not herald the return of fishes on damaged coral reefs. Oecologia 170, 567–573 (2012).
Pratchett, M. S., Coker, D. J., Jones, G. P. & Munday, P. L. Specialization in habitat use by coral reef damselfishes and their susceptibility to habitat loss. Ecol. Evol. 2, 2168–2180 (2012).
Ortiz, J. C. et al. Impaired recovery of the Great Barrier Reef under cumulative stress. Sci. Adv. 4, eaar6127. https://doi.org/10.1126/sciadv.aar6127 (2018).
Bellwood, D. R. et al. Coral reef conservation in the Anthropocene: Confronting spatial mismatches and prioritizing functions. Biol. Conserv. 236, 604–615 (2019).
Gilmour, J. P. et al. The state of Western Australia’s coral reefs. Coral Reefs 38, 651–667 (2019).
Pisapia, C., Burn, D. & Pratchett, M. S. Changes in the population and community structure of corals during recent disturbances (February 2016–October 2017) on Maldivian coral reefs. Sci. Rep. 9, 8402. https://doi.org/10.1038/s41598-019-44809-9 (2019).
Hoegh-Guldberg, O. et al. Coral reefs under rapid climate change and ocean acidification. Science 318, 1737–1742 (2007).
Bruno, J. F. & Valdivia, A. Coral reef degradation is not correlated with local human population density. Sci. Rep. 6, 29778. https://doi.org/10.1038/srep29778 (2016).
Hughes, T. P. et al. Spatial and temporal patterns of mass bleaching of corals in the Anthropocene. Science 359, 80–83 (2018).
Bruno, J. F. & Selig, E. R. Regional decline of coral cover in the Indo-Pacific: Timing, extent, and subregional comparisons. PLoS ONE 2, e711. https://doi.org/10.1371/journal.pone.0000711 (2017).
Kayal, M. et al. Predator crown-of-thorns starfish (Acanthaster planci) outbreak, mass mortality of corals, and cascading effects on reef fish and benthic communities. PLoS ONE 7, e47363. https://doi.org/10.1371/journal.pone.0047363 (2012).
Mellin, C. et al. Spatial resilience of the Great Barrier Reef under cumulative disturbance impacts. Glob. Change Biol. 25, 2431–2445 (2019).
Chesher, R. H. Destruction of Pacific corals by sea star Acanthaster planci. Science 165, 280–283 (1969).
Pratchett, M. S., Schenk, T. J., Baine, M., Syms, C. & Baird, A. H. Selective coral mortality associated with outbreaks of Acanthaster planci L. in Bootless Bay, Papua New Guinea. Mar. Environ. Res. 67, 230–236 (2009).
Kayal, M., Lenihan, H. S., Pau, C., Penin, L. & Adjeroud, M. Associational refuges among corals mediate impacts of a crown-of-thorns starfish Acanthaster planci outbreak. Coral Reefs 30, 827–837 (2011).
Pratchett, M. S., Caballes, C. F., Rivera-Posada, J. A. & Sweatman, H. P. A. Limits to understanding and managing outbreaks of crown-of-thorns stafish (Acanthaster spp.). Oceanogr. Mar. Biol. Ann. Rev. 52, 133–199 (2014).
Glynn, P. W. Some ecological consequences of coral-crustacean guard mutualisms in the Indian and Pacific Oceans. Symbiosis 4, 301–323 (1987).
Pratchett, M. S. Influence of coral symbionts on feeding preferences of crown-of-thorns starfish Acanthaster planci in the western Pacific. Mar. Ecol. Prog. Ser. 214, 111–119 (2001).
McKeon, C. S., Stier, A. C., McIlroy, S. E. & Bolker, B. M. Multiple defender effects: Synergistic coral defense by mutualist crustaceans. Oecologia 169, 1095–1103 (2012).
Weber, J. N. & Woodhead, P. M. Ecological studies of coral predator Acanthaster planci in South Pacific. Mar. Biol. 6, 12–17 (1970).
Birkeland, C. & Lucas, J. S. Acanthaster planci: Major Management Problem of Coral Reefs (CRC Press, Boca Raton, 1990).
Lassig, B. R. Communication and coexistence in a coral community. Mar. Biol. 42, 85–92 (1977).
Cowan, Z. L., Dworjanyn, S. A., Caballes, C. F. & Pratchett, M. S. Predation on crown-of-thorns starfish larvae by damselfishes. Coral Reefs 35, 1253–1262 (2016).
Cowan, Z. L., Ling, S. D., Caballes, C. F., Dworjanyn, S. A. & Pratchett, M. S. Crown-of-thorns starfish larvae are vulnerable to predation even in the presence of alternative prey. Coral Reefs 39, 293–303 (2020).
Bonin, M. C. Specializing on vulnerable habitat: Acropora selectivity among damselfish recruits and the risk of bleaching-induced habitat loss. Coral Reefs 31, 287–297 (2012).
Wilson, S. K., Graham, N. A. J., Pratchett, M. S., Jones, G. P. & Polunin, N. V. C. Multiple disturbances and the global degradation of coral reefs: Are reef fishes at risk or resilient?. Global Change Biol. 12, 2220–2234 (2006).
Pratchett, M. S. et al. Effects of climate-induced coral bleaching on coral-reef fishes—Ecological and economic consequences. Oceanogr. Mar. Biol. Ann. Rev. 46, 257–302 (2008).
Pratchett, M. S., Thompson, C. A., Hoey, A. S., Cowman, P. F. & Wilson, S. K. Effects of coral bleaching and coral loss on the structure and function of reef fish assemblages. In Coral Bleaching (eds. van Oppen, M. J. & Lough, J. M.) 265–293 (Springer, Berlin, 2018).
Bernal, M. A. et al. Species-specific molecular responses of wild coral reef fishes during a marine heatwave. Sci. Adv. 6, eaay3423. https://doi.org/10.1126/sciadv.aay3423 (2020).
Magel, J. M., Dimoff, S. A. & Baum, J. K. Direct and indirect effects of climate change-amplified pulse heat stress events on coral reef fish communities. Ecol. Appl. https://doi.org/10.1002/eap.2124 (2020).
Booth, D. J. Opposing climate-change impacts on poleward-shifting coral-reef fishes. Coral Reefs 39, 577–581 (2020).
Coker, D. J., Walker, S. P., Munday, P. L. & Pratchett, M. S. Social group entry rules may limit population resilience to patchy habitat disturbance. Mar. Ecol. Prog. Ser. 493, 237–242 (2013).
Thompson, C. A., Matthews, S., Hoey, A. S. & Pratchett, M. S. Changes in sociality of butterflyfishes linked to population declines and coral loss. Coral Reefs 38, 527–537 (2019).
Sano, M., Shimizu, M. & Nose, Y. Long-term effects of destruction of hermatypic corals by Acanthaster planci infestation on reef fish communities at Iriomote Island, Japan. Mar. Ecol. Prog. Ser. 37, 191–199 (1987).
Jones, G. P., McCormick, M. I., Srinivasan, M. & Eagle, J. V. Coral decline threatens fish biodiversity in marine reserves. Proc. Nat. Acad. Sci. USA 101, 8251–8253 (2004).
Feary, D. A., Almany, G. R., McCormick, M. I. & Jones, G. P. Habitat choice, recruitment and the response of coral reef fishes to coral degradation. Oecologia 153, 727–737 (2007).
McCormick, M. I. Lethal effects of habitat degradation on fishes through changing competitive advantage. Proc. R. Soc. B. 279, 3899–3904 (2012).
Coker, D. J., Pratchett, M. S. & Munday, P. L. Coral bleaching and habitat degradation increase susceptibility to predation for coral-dwelling fishes. Behav. Ecol. 20, 1204–1210 (2009).
Coker, D. J., Wilson, S. K. & Pratchett, M. S. of live coral habitat for reef fishes. Rev. Fish Biol. Fish. 24, 89–126 (2014).
Pratchett, M. S., Hoey, A. S., Wilson, S. K., Hobbs, J. P. & Allen, G. R. Habitat-use and specialisation among coral reef damselfishes. In Biology of Damselfishes (ed. Frederich, B. & Parmentier, E.) 84–121 (Taylor & Francis, London, 2016).
Sale, P. F. Extremely limited home range in a coral reef fish, Dascyllus aruanus (Pisces, Pomacentridae). Copeia 1971, 324–327 (1971).
Robertson, D. R. & Lassig, B. Spatial distribution patterns and coexistence of a group of territorial damselfishes from the Great Barrier Reef. Bull. Mar. Sci. 30, 187–203 (1980).
D’Agostino, D. et al. The influence of thermal extremes on coral reef fish behaviour in the Arabian/Persian Gulf. Coral Reefs 39, 733–744 (2019).
Adam, T. C. et al. How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations. Oecologia 176, 285–296 (2014).
Coker, D. J., Pratchett, M. S. & Munday, P. L. Influence of coral bleaching, coral mortality and conspecific aggression on movement and distribution of coral-dwelling fish. J. Exp. Mar. Biol. Ecol. 414, 62–68 (2012).
Chase, T. J., Pratchett, M. S., Frank, G. E. & Hoogenboom, M. O. Coral-dwelling fish moderate bleaching susceptibility of coral hosts. PLoS ONE 13, e0208545. https://doi.org/10.1371/journal.pone.0208545 (2018).
Wismer, S., Tebbett, S. B., Streit, R. P. & Bellwood, D. R. Spatial mismatch in fish and coral loss following 2016 mass coral bleaching. Sci. Total Environ. 50, 1487–1498 (2019).
Wilson, S. K. et al. Maintenance of fish diversity on disturbed coral reefs. Coral Reefs 28, 3–14 (2009).
Wilson, S. K., Robinson, J. P., Chong-Seng, K., Robinson, J. & Graham, N. A. Boom and bust of keystone structure on coral reefs. Coral Reefs 38, 625–635 (2019).
Schmidt-Roach, S. et al. Assessing hidden species diversity in the coral Pocillopora damicornis from Eastern Australia. Coral Reefs 32, 161–172 (2013).
Booth, D. J. & Beretta, G. A. Changes in a fish assemblage after a coral bleaching event. Mar. Ecol. Prog. Ser. 245, 205–212 (2002).
Sano, M., Shimizu, M. & Nose, Y. Changes in structure of coral reef fish communities by destruction of hermatypic corals: Observational and experimental views. Pac. Sci. 38, 51–79 (1984).
Bonin, M. C., Munday, P. L., McCormick, M. I., Srinivasan, M. & Jones, G. P. Coral-dwelling fishes resistant to bleaching but not to mortality of host corals. Mar. Ecol. Prog. Ser. 394, 215–222 (2009).
Paddack, M. J. et al. Recent region-wide declines in Caribbean reef fish abundance. Curr. Biol. 19, 590–595 (2009).
Booth, D. J. Larval settlement patterns and preferences by domino damselfish Dascyllus albisella Gill. J. Exp. Mar. Biol. Ecol. 155, 85–104 (1992).
Sweatman, H. P. A. The influence of adults of some coral reef fishes on larval recruitment. Ecol. Monogr. 55, 469–485 (1985).
Karplus, I., Katzenstein, R. & Goren, M. Predator recognition and social facilitation of predator avoidance in coral reef fish Dascyllus marginatus juveniles. Mar. Ecol. Prog. Ser. 319, 215–223 (2006).
Forrester, G. E. Social rank, individual size and group composition as determinants of food consumption by humbug damselfish, Dascyllus aruanus. Anim. Behav. 42, 701–711 (1991).
Holbrook, S. J., Brooks, A. J., Schmitt, R. J. & Stewart, H. L. Effects of sheltering fish on growth of their host corals. Mar. Biol. 155, 521–530 (2008).
Noonan, S. H., Jones, G. P. & Pratchett, M. S. Coral size, health and structural complexity: Effects on the ecology of a coral reef damselfish. Mar. Ecol. Prog. Ser. 456, 127–137 (2012).
Holbrook, S. J. & Schmitt, R. J. Competition for shelter space causes density-dependent predation mortality in damselfishes. Ecology 83, 2855–2868 (2002).
Turgeon, K. & Kramer, D. L. Immigration rates during population density reduction in a coral reef fish. PLoS ONE 11, e0156417. https://doi.org/10.1371/journal.pone.0156417 (2016).
Shpigel, M. & Fishelson, L. Behavior and physiology of coexistence in 2 species of Dascyllus (Pomacentridae, Teleostei). Environ. Biol. Fish. 17, 253–265 (1986).
Wong, M. Y., Buston, P. M., Munday, P. L. & Jones, G. P. The threat of punishment enforces peaceful cooperation and stabilizes queues in a coral-reef fish. Proc. R. Soc. B. 274, 1093–1099 (2007).
Hixon, M. A. & Carr, M. H. Synergistic predation, density dependence, and population regulation in marine fish. Science 277, 946–949 (1997).
Almany, G. R. Differential effects of habitat complexity, predators and competitors on abundance of juvenile and adult coral reef fishes. Oecologia 141, 105–113 (2004).
Wilson, S. K. et al. Influence of nursery microhabitats on the future abundance of a coral reef fish. Proc. R. Soc. B. 283, 20160903. https://doi.org/10.1098/rspb.2016.0903 (2016).
Graham, N. A. J., McClanahan, T. R., MacNeil, M. A., Wilson, S. K. & Polunin, N. V. C. Climate warming, marine protected areas and the ocean-scale integrity of coral reef ecosystems. PLoS ONE 3, e3039. https://doi.org/10.1371/journal.pone.0003039 (2008).
Hing, M. L., Klanten, O. S., Dowton, M., Brown, K. R. & Wong, M. Y. Repeated cyclone events reveal potential causes of sociality in coral-dwelling Gobiodon fishes. PLoS ONE 13, e0202407. https://doi.org/10.1371/journal.pone.0202407 (2018).
Hughes, et al. Global warming transforms coral reef assemblages. Nature 556, 492–496 (2018).
Emslie, M. J., Pratchett, M. S. & Cheal, A. J. Effects of different disturbance types on butterflyfish communities of Australia’s Great Barrier Reef. Coral Reefs 30, 461–471 (2011).
Buchanan, J. R. et al. Living on the edge: Vulnerability of coral-dependent fishes in the Gulf. Mar. Poll. Bull. 105, 480–488 (2016).
Pratchett, M. S. Dynamics of an outbreak population of Acanthaster planci at Lizard Island, northern Great Barrier Reef (1995–1999). Coral Reefs 24, 453–462 (2005).
Pratchett, M. S. et al. Spatial, temporal and taxonomic variation in coral growth—Implications for the structure and function of coral reef ecosystems. Oceanogr. Mar. Biol. Ann. Rev. 53, 215–295 (2015).
Manly, B. F., McDonald, L., Thomas, D. L., McDonald, T. L. & Erickson, W. P. Resource selection by animals (Kluwer Academic Publishers, Dordrecht, 2010).
Pinheiro, J., Bates, D., DebRoy, S., Sarkar, D. & R Core Team. nlme: Linear and nonlinear mixed effects models. https://CRAN.R-project.org/package=nlme (2020).
R Core Team. R: A language and environment for statistical computing. https://www.R-project.org (2016).
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