Fierer N. Embracing the unknown: disentangling the complexities of the soil microbiome. Nat Rev Microbiol. 2017;15:579–90.
Google Scholar
Ellis EC. Anthropogenic transformation of the terrestrial biosphere. Philos Trans R Soc A-Math Phys Eng Sci. 2011;369:1010–35.
Google Scholar
Jangid K, Williams MA, Franzluebbers AJ, Schmidt TM, Coleman DC, Whitman WB. Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties. Soil Biol Biochem. 2011;43:2184–93.
Google Scholar
Ramirez KS, Lauber CL, Knight R, Bradford MA, Fierer N. Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems. Ecology. 2010;91:3463–70.
Google Scholar
Hermans SM, Taylor M, Grelet G, Curran-Cournane F, Buckley HL, Handley KM, et al. From pine to pasture: land use history has long-term impacts on soil bacterial community composition and functional potential. FEMS Microbiol Ecol. 2020;96:1–12.
Keiser AD, Knoepp JD, Bradford MA. Disturbance decouples biogeochemical cycles across forests of the Southeastern US. Ecosystems. 2016;19:50–61.
Google Scholar
Goss-Souza D, Mendes LW, Borges CD, Baretta D, Tsai SM, Rodrigues J. Soil microbial community dynamics and assembly under long-term land use change. FEMS Microbiol Ecol. 2017;93:1–13.
Tripathi BM, Stegen JC, Kim M, Dong K, Adams JM, Lee YK. Soil pH mediates the balance between stochastic and deterministic assembly of bacteria. The ISME Journal. 2018;12:1072–83.
Google Scholar
Barnett SE, Youngblut ND, Buckley DH. Soil characteristics and land-use drive bacterial community assembly patterns. FEMS Microbiol Ecol. 2020;96:1–11.
Osburn ED, McBride SG, Aylward FO, Badgley BD, Strahm BD, Knoepp JD, et al. Soil bacterial and fungal communities exhibit distinct long-term responses to disturbance in temperate forests. Front Microbiol. 2019;10:2872.
Pruesse E, Peplies J, Glöckner FO. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics. 2012;28:1823–9.
Google Scholar
Mirarab S, Nguyen N, Guo S, Wang LS, Kim J, Warnow T, et al. PASTA: ultra-large multiple sequence alignment for nucleotide and amino-acid sequences. J Comput Biol. 2014;22:377–86.
Google Scholar
Wang P, Li SP, Yang X, Zhou J, Shu W, Jiang L. Mechanisms of soil bacterial and fungal community assembly differ among and within islands. Environ Microbiol. 2020;22:1559–71.
Google Scholar
Price MN, Dehal PS, Arkin AP. FastTree 2 – approximately maximum-likelihood trees for large alignments. PLoS ONE. 2010;5:e9490.
Google Scholar
Stegen JC, Lin X, Fredrickson JK, Chen X, Kennedy DW, Murray CJ, et al. Quantifying community assembly processes and identifying features that impose them. ISME J. 2013;7:2069–79.
Google Scholar
Fillinger L, Hug K, Griebler, C. Selection imposed by local environmental conditions drives differences in microbial community composition across geographically distinct groundwater aquifers. FEMS Microbiol. Ecol. 2019;95:1–12.
Powell JR, Karunaratne S, Campbell CD, Yao H, Robinson L, Singh BK. Deterministic processes vary during community assembly for ecologically dissimilar taxa. Nat Commun. 2015;6:8444.
Google Scholar
Peay KG, Schubert MG, Nguyen NH, Bruns TD. Measuring ectomycorrhizal fungal dispersal: macroecological patterns driven by microscopic propagules. Mol Ecol. 2012;21:4122–36.
Google Scholar
Elliott KJ, Vose JM. The contribution of the Coweeta Hydrologic Laboratory to developing an understanding of long-term (1934-2008) changes in managed and unmanaged forests. For Ecol Manag. 2011;261:900–10.
Google Scholar
Zhang X, Johnston ER, Liu W, Li L, Han X. Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes. Global Change Biology. 2016;22:198–207.
Google Scholar
Dini-Andreote F, Stegen JC, Elsas JD, van, Salles JF. Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession. Proc Natl Acad Sci USA. 2015;112:E1326–32.
Google Scholar
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