Fisher, R. et al. Species richness on coral reefs and the pursuit of convergent global estimates. Curr. Biol. 25, 500–505 (2015).
Google Scholar
Costanza, R. et al. Changes in the global value of ecosystem services. Glob. Environ. Change 26, 152–158 (2014).
Google Scholar
Moberg, F. & Folke, C. Ecological goods and services of coral reef ecosystems. Ecol. Econ. 29, 215–233 (1999).
Google Scholar
Wilkinson, C. Status of Coral Reefs of the World: 2008 (Global Coral Reef Monitoring Network, 2008).
Spalding, M. et al. Mapping the global value and distribution of coral reef tourism. Mar. Policy 82, 104–113 (2017).
Google Scholar
Hoegh-Guldberg, O. Climate change, coral bleaching and the future of the world’s coral reefs. Mar. Freshw. Res. 50, 839–866 (1999). This paper projects loss and degradation of coral reefs on a global scale before it became common knowledge.
Hughes, T. P. et al. Global warming transforms coral reef assemblages. Nature 556, 492–496 (2018).
Google Scholar
Porter, J. W. & Meier, O. W. Quantification of loss and change in Floridian reef coral populations. Am. Zool. 32, 625–640 (1992).
Google Scholar
Ruzicka, R. R. et al. Temporal changes in benthic assemblages on Florida Keys reefs 11 years after the 1997/1998 El Niño. Mar. Ecol. Prog. Ser. 489, 125–141 (2013).
Google Scholar
Somerfield, P. J. et al. Changes in coral reef communities among the Florida Keys, 1996–2003. Coral Reefs 27, 951–965 (2008).
Google Scholar
Lapointe, B. E., Brewton, R. A., Herren, L. W., Porter, J. W. & Hu, C. Nitrogen enrichment, altered stoichiometry, and coral reef decline at Looe Key, Florida Keys, USA: a 3-decade study. Mar. Biol. 166, 108 (2019).
Google Scholar
Suggett, D. J. & Smith, D. J. Coral bleaching patterns are the outcome of complex biological and environmental networking. Global Change Biol. https://doi.org/10.1111/gcb.14871 (2019).
Google Scholar
Hughes, T. P. et al. Spatial and temporal patterns of mass bleaching of corals in the Anthropocene. Science 359, 80–83 (2018).
Google Scholar
Lesser, M. P. in Coral Reefs: An Ecosystem in Transition (eds Dubinsky, Z. & Stambler, N.) 405–419 (Springer, 2011).
Rädecker, N. et al. Heat stress destabilizes symbiotic nutrient cycling in corals. Proc. Natl Acad. Sci. USA 118, e2022653118 (2021). This paper demonstrates that algal symbionts cease photosynthate transfer to coral hosts under heat stress long before visual signs of bleaching (symbiont loss) become evident.
Google Scholar
Allen, M. R. et al. in Sustainable Development, and Efforts to Eradicate Poverty (eds Masson-Delmotte, V. et al.) 41–91 (IPCC, 2018).
Gattuso, J.-P. et al. Contrasting futures for ocean and society from different anthropogenic CO2 emissions scenarios. Science 349, aac4722 (2015).
Google Scholar
Hughes, D. J. et al. Coral reef survival under accelerating ocean deoxygenation. Nat. Clim. Chang. 10, 296–307 (2020).
Google Scholar
Durack, P.J., Wijffels, S.E. & Matear, R.J. Ocean salinities reveal strong global water cycle intensification during 1950 to 2000. Science 336, 455-458 (2012).
Google Scholar
Morris, L. A., Voolstra, C. R., Quigley, K. M., Bourne, D. G. & Bay, L. K. Nutrient availability and metabolism affect the stability of coral–Symbiodiniaceae symbioses. Trends Microbiol. 27, 678–689 (2019).
Google Scholar
Muller, E. M., Sartor, C., Alcaraz, N. I. & van Woesik, R. Spatial Epidemiology of the Stony-Coral-Tissue-Loss Disease in Florida. Front. Mar. Sci. 7, 163 (2020).
Google Scholar
Hughes, T. P. et al. Climate change, human impacts, and the resilience of coral reefs. Science 301, 929–933 (2003).
Google Scholar
Nyström, M., Folke, C. & Moberg, F. Coral reef disturbance and resilience in a human-dominated environment. Trends Ecol. Evol. 15, 413–417 (2000).
Google Scholar
Wiedenmann, J. et al. Nutrient enrichment can increase the susceptibility of reef corals to bleaching. Nat. Clim. Chang. 3, 160–164 (2012).
Google Scholar
D’Angelo, C. & Wiedenmann, J. Impacts of nutrient enrichment on coral reefs: new perspectives and implications for coastal management and reef survival. Curr. Opin. Environ. Sust. 7, 82–93 (2014).
Google Scholar
Thurber, R. L. V. et al. Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching. Glob. Change Biol. 20, 544–554 (2014).
Google Scholar
Donovan, M. K. et al. Local conditions magnify coral loss after marine heatwaves. Science 372, 977–980 (2021).
Google Scholar
Climate change widespread, rapid, and intensifying. IPCC (9 August 2021); https://www.ipcc.ch/2021/08/09/ar6-wg1-20210809-pr.
Radchuk, V. et al. Adaptive responses of animals to climate change are most likely insufficient. Nat. Commun. 10, 3109 (2019).
Google Scholar
Kleypas, J. et al. Designing a blueprint for coral reef survival. Biol. Conserv. 257, 109107 (2021).
Google Scholar
Gattuso, J.-P. et al. Ocean solutions to address climate change and Its effects on marine ecosystems. Front. Mar. Sci. 5, 337 (2018).
Google Scholar
Knowlton, N. et al. Rebuilding Coral Reefs: A Decadal Grand Challenge (International Coral Reef Society and Future Earth Coasts, 2021) https://doi.org/10.53642/NRKY9386.
Hoegh-Guldberg, O., Kennedy, E. V., Beyer, H. L., McClennen, C. & Possingham, H. P. Securing a long-term future for coral reefs. Trends Ecol. Evol. 33, 936–944 (2018).
Google Scholar
Zoccola, D. et al. The World Coral Conservatory (WCC): a Noah’s ark for corals to support survival of reef ecosystems. PLoS Biol. 18, e3000823 (2020).
Google Scholar
Kleinhaus, K. et al. Science, diplomacy, and the Red Sea’s unique coral reef: it’s time for action. Front. Mar. Sci. 7, 90 (2020).
Google Scholar
van Oppen, M. J. H., Oliver, J. K., Putnam, H. M. & Gates, R. D. Building coral reef resilience through assisted evolution. Proc. Natl Acad. Sci. USA 112, 2307–2313 (2015).
Google Scholar
Baums, I. B. et al. Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic. Ecol. Appl. 29, e01978 (2019).
Google Scholar
Peixoto, R. S., Sweet, M. & Bourne, D. G. Customized medicine for corals. Front. Mar. Sci. 6, 686 (2019).
Google Scholar
Rinkevich, B. The active reef restoration toolbox is a vehicle for coral resilience and adaptation in a changing world. J. Mar. Sci. Eng. 7, 201 (2019).
Google Scholar
Boström-Einarsson, L. et al. Coral restoration — a systematic review of current methods, successes, failures and future directions. PLoS ONE 15, e0226631 (2020).
Google Scholar
Voolstra, C. R. et al. Standardized short-term acute heat stress assays resolve historical differences in coral thermotolerance across microhabitat reef sites. Glob. Chang. Biol. 26, 4328–4343 (2020). This paper highlights the potential of mobile acute heat stress assays to resolve fine-scale differences in coral thermotolerance, suitable for large-scale identification of resilient genotypes/reefs for conservation and restoration approaches.
Google Scholar
Parkinson, J. E. et al. Molecular tools for coral reef restoration: beyond biomarker discovery. Conserv. Lett. 13, e12687 (2020).
Google Scholar
Voolstra, C. R. et al. Contrasting heat stress response patterns of coral holobionts across the Red Sea suggest distinct mechanisms of thermal tolerance. Mol. Ecol. https://doi.org/10.1111/mec.16064 (2021).
Google Scholar
Morikawa, M. K. & Palumbi, S. R. Using naturally occurring climate resilient corals to construct bleaching-resistant nurseries. Proc. Natl Acad. Sci. USA 116, 10586–10591 (2019).
Google Scholar
Sweet, M. & Brown, B. in Oceanography and Marine Biology — An Annual Review (eds Hughes R.N. et al.) 271–314 (CRC, 2016).
Voolstra, C. R. & Ziegler, M. Adapting with microbial help: microbiome flexibility facilitates rapid responses to environmental change. Bioessays 42, e2000004 (2020). This paper proposes microbiome flexibility as a mechanism to aid adaptation to environmental change and posits that capacity for dynamic restructuring of the microbiome is host specific.
Google Scholar
Jaspers, C. et al. Resolving structure and function of metaorganisms through a holistic framework combining reductionist and integrative approaches. Zoology 133, 81–87 (2019).
Google Scholar
Torda, G. et al. Rapid adaptive responses to climate change in corals. Nat. Clim. Chang. 7, 627–636 (2017).
Google Scholar
Ziegler, M., Seneca, F. O., Yum, L. K., Palumbi, S. R. & Voolstra, C. R. Bacterial community dynamics are linked to patterns of coral heat tolerance. Nat. Commun. 8, 14213 (2017). This paper provides the first putative link between bacterial community composition and coral heat tolerance.
Google Scholar
Morgans, C. A., Hung, J. Y., Bourne, D. G. & Quigley, K. M. Symbiodiniaceae probiotics for use in bleaching recovery. Restor. Ecol. 28, 282–288 (2020).
Google Scholar
Liew, Y. J. et al. Intergenerational epigenetic inheritance in reef-building corals. Nat. Clim. Chang. 10, 254–259 (2020).
Google Scholar
Craggs, J. et al. Inducing broadcast coral spawning ex situ: closed system mesocosm design and husbandry protocol. Ecol. Evol. 7, 11066–11078 (2017).
Google Scholar
Camp, E. F., Schoepf, V. & Suggett, D. J. How can “super corals” facilitate global coral reef survival under rapid environmental and climatic change? Glob. Chang. Biol. 24, 2755–2757 (2018).
Google Scholar
Peixoto, R. S. et al. Coral probiotics: premise, promise, prospects. Annu. Rev. Anim. Biosci. 9, 265–288 (2021). This paper reviews coral probiotics and critical assessment of applicability.
Google Scholar
Doering, T. et al. Towards enhancing coral heat tolerance: a “microbiome transplantation” treatment using inoculations of homogenized coral tissues. Microbiome 9, 102 (2021).
Google Scholar
Howells, E. J. et al. Enhancing the heat tolerance of reef-building corals to future warming. Sci. Adv. 7 (2021).
Devlin-Durante, M. K., Miller, M. W., Caribbean Acropora Research Group, Precht, W. F. & Baums, I. B. How old are you? Genet age estimates in a clonal animal. Mol. Ecol. 25, 5628–5646 (2016).
Google Scholar
Irwin, A. et al. Age and intraspecific diversity of resilient Acropora communities in Belize. Coral Reefs 36, 1111–1120 (2017).
Google Scholar
Palumbi, S. R., Barshis, D. J., Traylor-Knowles, N. & Bay, R. A. Mechanisms of reef coral resistance to future climate change. Science 344, 895–898 (2014). This paper demonstrates that acclimation and adaptation contribute to coral thermal tolerance and climate resistance at about equal contribution.
Google Scholar
Barott, K. L. et al. Coral bleaching response is unaltered following acclimatization to reefs with distinct environmental conditions. Proc. Natl Acad. Sci. USA 118, e2025435118 (2021).
Google Scholar
Thomas, L., López, E. H., Morikawa, M. K. & Palumbi, S. R. Transcriptomic resilience, symbiont shuffling, and vulnerability to recurrent bleaching in reef-building corals. Mol. Ecol. 28, 3371–3382 (2019).
Google Scholar
Bellantuono, A. J., Granados-Cifuentes, C., Miller, D. J., Hoegh-Guldberg, O. & Rodriguez-Lanetty, M. Coral thermal tolerance: tuning gene expression to resist thermal stress. PLoS ONE 7, e50685 (2012).
Google Scholar
Barshis, D. J. et al. Genomic basis for coral resilience to climate change. Proc. Natl Acad. Sci. USA 110, 1387–1392 (2013).
Google Scholar
Savary, R. et al. Fast and pervasive transcriptomic resilience and acclimation of extremely heat-tolerant coral holobionts from the northern Red Sea. Proc. Natl Acad. Sci. USA 118, e2023298118 (2021).
Google Scholar
Liew, Y. J. et al. Epigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral. Sci. Adv. 4, eaar8028 (2018).
Google Scholar
Durante, M. K., Baums, I. B., Williams, D. E., Vohsen, S. & Kemp, D. W. What drives phenotypic divergence among coral clonemates of Acropora palmata? Mol. Ecol. 28, 3208–3224 (2019).
Google Scholar
Rodríguez-Casariego, J. A. et al. Genome-Wide DNA Methylation Analysis Reveals a Conserved Epigenetic Response to Seasonal Environmental Variation in the Staghorn Coral Acropora cervicornis. Front. Mar. Sci. 7, 822 https://doi.org/10.3389/fmars.2020.560424 (2020).
Putnam, H. M. & Gates, R. D. Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions. J. Exp. Biol. 218, 2365–2372 (2015).
Google Scholar
Putnam, H. M., Davidson, J. M. & Gates, R. D. Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals. Evol. Appl. 9, 1165–1178 (2016).
Google Scholar
Putnam, H. M., Ritson-Williams, R., Cruz, J. A., Davidson, J. M. & Gates, R. D. Environmentally-induced parental or developmental conditioning influences coral offspring ecological performance. Sci. Rep. 10, 13664 (2020).
Google Scholar
Drury, C. et al. Genomic variation among populations of threatened coral: Acropora cervicornis. BMC Genomics 17, 286 (2016).
Google Scholar
Bay, R. A., Rose, N. H., Logan, C. A. & Palumbi, S. R. Genomic models predict successful coral adaptation if future ocean warming rates are reduced. Sci. Adv. 3, e1701413 (2017).
Google Scholar
Prada, C. et al. Empty niches after extinctions increase population sizes of modern corals. Curr. Biol. 26, 3190–3194 (2016).
Google Scholar
Robitzch, V., Banguera-Hinestroza, E., Sawall, Y., Al-Sofyani, A. and Voolstra, C.R., 2015. Absence of genetic differentiation in the coral Pocillopora verrucosa along environmental gradients of the Saudi Arabian Red Sea. Front. Mar. Sci. 2, 5 (2015).
Google Scholar
Van Oppen, M. J. H., Souter, P., Howells, E. J., Heyward, A. & Berkelmans, R. Novel genetic diversity through somatic mutations: fuel for adaptation of reef corals? Diversity 3, 405–423 (2011).
Google Scholar
Vasquez Kuntz, K. L. et al. Juvenile corals inherit mutations acquired during the parent’s lifespan. Preprint at bioRxiv https://doi.org/10.1101/2020.10.19.345538 (2020).
Google Scholar
Matz, M. V., Treml, E. A., Aglyamova, G. V. & Bay, L. K. Potential and limits for rapid genetic adaptation to warming in a Great Barrier Reef coral. PLoS Genet. 14, e1007220 (2018).
Google Scholar
Guest, J. R. et al. Contrasting patterns of coral bleaching susceptibility in 2010 suggest an adaptive response to thermal stress. PLoS ONE 7, e33353 (2012).
Google Scholar
Coles, S. L. et al. Evidence of acclimatization or adaptation in Hawaiian corals to higher ocean temperatures. PeerJ 6, e5347 (2018).
Google Scholar
Sully, S., Burkepile, D. E., Donovan, M. K., Hodgson, G. & van Woesik, R. A global analysis of coral bleaching over the past two decades. Nat. Commun. 10, 1264 (2019).
Google Scholar
Camp, E. F. et al. The future of coral reefs subject to rapid climate change: lessons from natural extreme environments. Front. Mar. Sci. 5, 4 (2018).
Google Scholar
Oliver, T. A. & Palumbi, S. R. Do fluctuating temperature environments elevate coral thermal tolerance? Coral Reefs 30, 429–440 (2011).
Google Scholar
Morgan, K. M., Perry, C. T., Smithers, S. G., Johnson, J. A. & Daniell, J. J. Evidence of extensive reef development and high coral cover in nearshore environments: implications for understanding coral adaptation in turbid settings. Sci. Rep. 6, 29616 (2016).
Google Scholar
Middlebrook, R., Hoegh-Guldberg, O. & Leggat, W. The effect of thermal history on the susceptibility of reef-building corals to thermal stress. J. Exp. Biol. 211, 1050–1056 (2008).
Google Scholar
Brown, B. E., Dunne, R. P., Edwards, A. J., Sweet, M. J. & Phongsuwan, N. Decadal environmental ‘memory’ in a reef coral? Mar. Biol. 162, 479–483 (2015).
Google Scholar
Dixon, G., Liao, Y., Bay, L. K. & Matz, M. V. Role of gene body methylation in acclimatization and adaptation in a basal metazoan. Proc. Natl Acad. Sci. USA 115, 13342–13346 (2018).
Google Scholar
Humanes, A. et al. An experimental framework for selectively breeding corals for assisted evolution. Front. Mar. Sci. 8, 626 (2021).
Google Scholar
Dixon, G. B. et al. Genomic determinants of coral heat tolerance across latitudes. Science 348, 1460–1462 (2015). This paper demonstrates applicability of assisted evolution via selective breeding.
Google Scholar
van Oppen, M. J. H. et al. Shifting paradigms in restoration of the world’s coral reefs. Glob. Chang. Biol. 23, 3437–3448 (2017).
Google Scholar
Fukami, H. et al. Conventional taxonomy obscures deep divergence between Pacific and Atlantic corals. Nature 427, 832–835 (2004).
Google Scholar
Voolstra, C. R. et al. Consensus guidelines for advancing coral holobiont genome and specimen voucher deposition. Front. Mar. Sci. 8, 1029 (2021).
Google Scholar
Seneca, F. O. & Palumbi, S. R. The role of transcriptome resilience in resistance of corals to bleaching. Mol. Ecol. 24, 1467–1484 (2015).
Google Scholar
Evensen, N. R., Fine, M., Perna, G., Voolstra, C. R. & Barshis, D. J. Remarkably high and consistent tolerance of a Red Sea coral to acute and chronic thermal stress exposures. Limnol. Oceanogr. https://doi.org/10.1002/lno.11715 (2021).
Google Scholar
Cleves, P. A., Strader, M. E., Bay, L. K., Pringle, J. R. & Matz, M. V. CRISPR/Cas9-mediated genome editing in a reef-building coral. Proc. Natl Acad. Sci. USA 115, 5235–5240 (2018).
Google Scholar
Cleves, P. A. et al. Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor. Proc. Natl Acad. Sci. USA 117, 28899–28905 (2020).
Google Scholar
Fuller, Z. L. et al. Population genetics of the coral Acropora millepora: toward genomic prediction of bleaching. Science 369, eaba4674 (2020).
Google Scholar
Yetsko, K. et al. Genetic differences in thermal tolerance among colonies of threatened coral Acropora cervicornis: potential for adaptation to increasing temperature. Mar. Ecol. Prog. Ser. 646, 45–68 (2020).
Google Scholar
Kenkel, C. D., Almanza, A. T. & Matz, M. V. Fine-scale environmental specialization of reef-building corals might be limiting reef recovery in the Florida Keys. Ecology 96, 3197–3212 (2015).
Google Scholar
D’Angelo, C. et al. Local adaptation constrains the distribution potential of heat-tolerant Symbiodinium from the Persian/Arabian Gulf. ISME J. 9, 2551–2560 (2015).
Google Scholar
Safaie, A. et al. High frequency temperature variability reduces the risk of coral bleaching. Nat. Commun. 9, 1671 (2018).
Google Scholar
Quigley, K. M., Bay, L. K. & van Oppen, M. J. H. Genome-wide SNP analysis reveals an increase in adaptive genetic variation through selective breeding of coral. Mol. Ecol. 29, 2176–2188 (2020).
Google Scholar
Craggs, J., Guest, J., Bulling, M. & Sweet, M. Ex situ co culturing of the sea urchin, Mespilia globulus and the coral Acropora millepora enhances early post-settlement survivorship. Sci. Rep. 9, 12984 (2019).
Google Scholar
Quigley, K. M. et al. Variability in fitness trade-offs amongst coral juveniles with mixed genetic backgrounds held in the wild. Front. Mar. Sci. 8, 161 (2021).
Google Scholar
LaJeunesse, T. C. et al. Systematic revision of Symbiodiniaceae highlights the antiquity and diversity of coral endosymbionts. Curr. Biol. 28, 2570–2580.e6 (2018). This paper provides a revised coral symbiont taxonomy and shows that Symbiodiniaceae diversification coincides with the radiation of reef-building corals.
Google Scholar
Muscatine, L. The role of symbiotic algae in carbon and energy flux in reef corals. Coral Reefs 25, 75–87 (1990).
Trench, R. K. Microalgal–invertebrate symbiosis, a review. Endocytobiosis Cell Res. 9, 135–175 (1993).
Pogoreutz, C. et al. in Cellular Dialogues in the Holobiont (eds Bosch, T. C. G. & Hadfield, M. G.) 91–118 (CRC, 2020). https://doi.org/10.1201/9780429277375-7.
Hume, B. C. C. et al. SymPortal: a novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling. Mol. Ecol. Resour. 19, 1063–1080 (2019).
Google Scholar
Decelle, J. et al. Worldwide occurrence and activity of the reef-building coral symbiont Symbiodinium in the open ocean. Curr. Biol. 28, 3625–3633.e3 (2018).
Google Scholar
Aranda, M. et al. Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle. Sci. Rep. 6, 39734 (2016).
Google Scholar
González-Pech, R. A., Bhattacharya, D., Ragan, M. A. & Chan, C. X. Genome evolution of coral reef symbionts as intracellular residents. Trends Ecol. Evol. 34, 799–806 (2019).
Google Scholar
Hume, B. C. C., Mejia-Restrepo, A., Voolstra, C. R. & Berumen, M. L. Fine-scale delineation of Symbiodiniaceae genotypes on a previously bleached central Red Sea reef system demonstrates a prevalence of coral host-specific associations. Coral Reefs 39, 583–601 (2020).
Google Scholar
Howells, E. J. et al. Corals in the hottest reefs in the world exhibit symbiont fidelity not flexibility. Mol. Ecol. 29, 899–911 (2020).
Google Scholar
Turnham, K. E., Wham, D. C., Sampayo, E. & LaJeunesse, T. C. Mutualistic microalgae co-diversify with reef corals that acquire symbionts during egg development. ISME J. https://doi.org/10.1038/s41396-021-01007-8 (2021).
Google Scholar
Grottoli, A. G. et al. The cumulative impact of annual coral bleaching can turn some coral species winners into losers. Glob. Chang. Biol. 20, 3823–3833 (2014).
Google Scholar
LaJeunesse, T. C., Smith, R. T., Finney, J. & Oxenford, H. Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral ‘bleaching’ event. Proc. R. Soc. B Biol. Sci. 276, 4139–4148 (2009).
Google Scholar
Grégoire, V., Schmacka, F., Coffroth, M. A. & Karsten, U. Photophysiological and thermal tolerance of various genotypes of the coral endosymbiont Symbiodinium sp. (Dinophyceae). J. Appl. Phycol. 29, 1893–1905 (2017).
Google Scholar
Quigley, K. M., Baker, A. C., Coffroth, M. A., Willis, B. L. & van Oppen, M. J. H. in Coral Bleaching: Patterns, Processes, Causes and Consequences (eds van Oppen, M. J. H. & Lough, J. M.) 111–151 (Springer International, 2018).
Ziegler, M., Arif, C. & Voolstra, C. R. in Coral Reefs of the Red Sea (eds Voolstra, C. R. & Berumen, M. L.) 69–89 (Springer International, 2019).
Suggett, D. J., Warner, M. E. & Leggat, W. Symbiotic dinoflagellate functional diversity mediates coral survival under ecological crisis. Trends Ecol. Evol. 32, 735–745 (2017).
Google Scholar
Hume, B. C. C. et al. Ancestral genetic diversity associated with the rapid spread of stress-tolerant coral symbionts in response to Holocene climate change. Proc. Natl Acad. Sci. USA 113, 4416–4421 (2016).
Google Scholar
Ochsenkühn, M. A., Röthig, T., D’Angelo, C., Wiedenmann, J. & Voolstra, C. R. The role of floridoside in osmoadaptation of coral-associated algal endosymbionts to high-salinity conditions. Sci. Adv. 3, e1602047 (2017).
Google Scholar
Baumgarten, S. et al. Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals. BMC Genomics 14, 704 (2013).
Google Scholar
Klein, S. G. et al. Symbiodinium mitigate the combined effects of hypoxia and acidification on a noncalcifying cnidarian. Glob. Chang. Biol. 23, 3690–3703 (2017).
Google Scholar
Liew, Y. J., Li, Y., Baumgarten, S., Voolstra, C. R. & Aranda, M. Condition-specific RNA editing in the coral symbiont Symbiodinium microadriaticum. PLoS Genet. 13, e1006619 (2017).
Google Scholar
Warner, M. E. & Suggett, D. J. in The Cnidaria, Past, Present and Future: The World of Medusa and Her Sisters (eds Goffredo, S. & Dubinsky, Z.) 489–509 (Springer International, 2016).
Levin, R. A. et al. Sex, scavengers, and chaperones: transcriptome secrets of divergent symbiodinium thermal tolerances. Mol. Biol. Evol. 33, 3032 (2016).
Google Scholar
Nand, A. et al. Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum. Nat. Genet. 53, 618–629 (2021).
Google Scholar
Buerger, P. et al. Heat-evolved microalgal symbionts increase coral bleaching tolerance. Sci. Adv. 6, eaba2498 (2020).
Google Scholar
Thornhill, D. J., Howells, E. J., Wham, D. C., Steury, T. D. & Santos, S. R. Population genetics of reef coral endosymbionts (Symbiodinium, Dinophyceae). Mol. Ecol. 26, 2640–2659 (2017).
Google Scholar
LaJeunesse, T. C. et al. Long-standing environmental conditions, geographic isolation and host–symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genus Symbiodinium. J. Biogeogr. 37, 785–800 (2010).
Google Scholar
Parkinson, J. E. et al. Gene expression variation resolves species and individual strains among coral-associated dinoflagellates within the genus Symbiodinium. Genome Biol. Evol. 8, 665–680 (2016).
Google Scholar
Baker, A. C. Flexibility and specificity in coral–algal symbiosis: diversity, ecology, and biogeography of Symbiodinium. Annu. Rev. Ecol. Evol. Syst. 34, 661–689 (2003).
Google Scholar
Boulotte, N. M. et al. Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals. ISME J. 10, 2693–2701 (2016).
Google Scholar
Ziegler, M., Eguíluz, V. M., Duarte, C. M. & Voolstra, C. R. Rare symbionts may contribute to the resilience of coral–algal assemblages. ISME J. 12, 161–172 (2018).
Google Scholar
Mies, M., Sumida, P. Y. G., Rädecker, N. & Voolstra, C. R. Marine Invertebrate Larvae Associated with Symbiodinium: A Mutualism from the Start? Front. Ecol. Evol. 5, 56 https://www.frontiersin.org/article/10.3389/fevo.2017.00056 (2017).
Cumbo, V. R., Baird, A. H. & van Oppen, M. J. H. The promiscuous larvae: flexibility in the establishment of symbiosis in corals. Coral Reefs 32, 111–120 (2013).
Google Scholar
Quigley, K. M., Willis, B. L. & Bay, L. K. Heritability of the Symbiodinium community in vertically- and horizontally-transmitting broadcast spawning corals. Sci. Rep. 7, 8219 (2017).
Google Scholar
National Academies of Sciences, Engineering, and Medicine. A Research Review of Interventions to Increase the Persistence and Resilience of Coral Reefs (National Academies Press, 2019). This book reviews restoration interventions, detailing latest emerging technologies and approaches.
Quigley, K. M., Randall, C. J., van Oppen, M. J. H. & Bay, L. K. Assessing the role of historical temperature regime and algal symbionts on the heat tolerance of coral juveniles. Biol. Open 9, bio047316 (2020).
Google Scholar
McIlroy, S. E. et al. The effects of Symbiodinium (Pyrrhophyta) identity on growth, survivorship, and thermal tolerance of newly settled coral recruits. J. Phycol. 52, 1114–1124 (2016).
Google Scholar
Thornhill, D. J., Daniel, M. W., LaJeunesse, T. C., Schmidt, G. W. & Fitt, W. K. Natural infections of aposymbiotic Cassiopea xamachana scyphistomae from environmental pools of Symbiodinium. J. Exp. Mar. Bio. Ecol. 338, 50–56 (2006).
Google Scholar
Coffroth, M. A., Lewis, C. F., Santos, S. R. & Weaver, J. L. Environmental populations of symbiotic dinoflagellates in the genus Symbiodinium can initiate symbioses with reef cnidarians. Curr. Biol. 16, R985–R987 (2006).
Google Scholar
Fujise, L. et al. Unlocking the phylogenetic diversity, primary habitats, and abundances of free-living Symbiodiniaceae on a coral reef. Mol. Ecol. 30, 343–360 (2021).
Google Scholar
Levin, R. A. et al. Engineering strategies to decode and enhance the genomes of coral symbionts. Front. Microbiol. 8, 1220 (2017).
Google Scholar
Chen, J. E., Barbrook, A. C., Cui, G., Howe, C. J. & Aranda, M. The genetic intractability of Symbiodinium microadriaticum to standard algal transformation methods. PLoS ONE 14, e0211936 (2019).
Google Scholar
Sheykhali, S. et al. Robustness to extinction and plasticity derived from mutualistic bipartite ecological networks. Sci. Rep. 10, 9783 (2020).
Google Scholar
Quigley, K. M., Bay, L. K. & Willis, B. L. Leveraging new knowledge of Symbiodinium community regulation in corals for conservation and reef restoration. Mar. Ecol. Prog. Ser. 600, 245–253 (2018).
Google Scholar
LaJeunesse, T. C. et al. Host–symbiont recombination versus natural selection in the response of coral–dinoflagellate symbioses to environmental disturbance. Proc. R. Soc. B: Biol. Sci. 277, 2925–2934 (2010).
Google Scholar
Poland, D. M. & Coffroth, M. A. Trans-generational specificity within a cnidarian–algal symbiosis. Coral Reefs 36, 119–129 (2017).
Google Scholar
Sampayo, E. M. et al. Coral symbioses under prolonged environmental change: living near tolerance range limits. Sci. Rep. 6, 36271 (2016).
Google Scholar
Abrego, D., van Oppen, M. J. H. & Willis, B. L. Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny. Mol. Ecol. 18, 3532–3543 (2009).
Google Scholar
Pettay, D. T., Wham, D. C., Smith, R. T., Iglesias-Prieto, R. & LaJeunesse, T. C. Microbial invasion of the Caribbean by an Indo-Pacific coral zooxanthella. Proc. Natl Acad. Sci. USA 112, 7513–7518 (2015).
Google Scholar
Qin, Z. et al. Diversity of Symbiodiniaceae in 15 coral species from the Southern South China Sea: potential relationship with coral thermal adaptability. Front. Microbiol. 10, 2343 (2019).
Google Scholar
Claar, D. C. et al. Dynamic symbioses reveal pathways to coral survival through prolonged heatwaves. Nat. Commun. 11, 6097 (2020).
Google Scholar
Lim, E.-P. et al. Continuation of tropical Pacific Ocean temperature trend may weaken extreme El Niño and its linkage to the Southern Annular Mode. Sci. Rep. 9, 17044 (2019).
Google Scholar
Pollock, F. J. et al. Coral larvae for restoration and research: a large-scale method for rearing Acropora millepora larvae, inducing settlement, and establishing symbiosis. PeerJ 5, e3732 (2017).
Google Scholar
McFall-Ngai, M. et al. Animals in a bacterial world, a new imperative for the life sciences. Proc. Natl Acad. Sci. USA 110, 3229–3236 (2013).
Google Scholar
Bosch, T. C. G. & McFall-Ngai, M. J. Metaorganisms as the new frontier. Zoology 114, 185–190 (2011).
Google Scholar
Robbins, S. J. et al. A genomic view of the reef-building coral Porites lutea and its microbial symbionts. Nat. Microbiol. 4, 2090–2100 (2019).
Google Scholar
Bang, C. et al. Metaorganisms in extreme environments: do microbes play a role in organismal adaptation? Zoology 127, 1–19 (2018).
Google Scholar
Williams, A. D., Brown, B. E., Putchim, L. & Sweet, M. J. Age-related shifts in bacterial diversity in a reef coral. PLoS ONE 10, e0144902 (2015).
Google Scholar
Roder, C., Bayer, T., Aranda, M., Kruse, M. & Voolstra, C. R. Microbiome structure of the fungid coral Ctenactis echinata aligns with environmental differences. Mol. Ecol. 24, 3501–3511 (2015).
Google Scholar
Sweet, M. J., Brown, B. E., Dunne, R. P., Singleton, I. & Bulling, M. Evidence for rapid, tide-related shifts in the microbiome of the coral Coelastrea aspera. Coral Reefs 36, 815–828 (2017).
Google Scholar
Ziegler, M. et al. Coral bacterial community structure responds to environmental change in a host-specific manner. Nat. Commun. 10, 3092 (2019).
Google Scholar
Reshef, L., Koren, O., Loya, Y., Zilber-Rosenberg, I. & Rosenberg, E. The coral probiotic hypothesis. Environ. Microbiol. 8, 2068–2073 (2006).
Google Scholar
Pogoreutz, C. et al. Dominance of Endozoicomonas bacteria throughout coral bleaching and mortality suggests structural inflexibility of the Pocillopora verrucosa microbiome. Ecol. Evol. 8, 2240–2252 (2018).
Google Scholar
Neave, M. J. et al. Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales. ISME J. 11, 186–200 (2017).
Google Scholar
Neave, M. J., Apprill, A., Ferrier-Pagès, C. & Voolstra, C. R. Diversity and function of prevalent symbiotic marine bacteria in the genus. Endozoicomonas. Appl. Microbiol. Biotechnol. 100, 8315–8324 (2016).
Google Scholar
Nissimov, J., Rosenberg, E. & Munn, C. B. Antimicrobial properties of resident coral mucus bacteria of Oculina patagonica. FEMS Microbiol. Lett. 292, 210–215 (2009).
Google Scholar
Sharp, K. H., Sneed, J. M., Ritchie, K. B., Mcdaniel, L. & Paul, V. J. Induction of larval settlement in the reef coral Porites astreoides by a cultivated marine roseobacter strain. Biol. Bull. 228, 98–107 (2015).
Google Scholar
Rosado, P. M. et al. Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation. ISME J. 13, 921–936 (2019).
Google Scholar
Sunagawa, S. et al. Bacterial diversity and white plague disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J. 3, 512–521 (2009).
Google Scholar
Ushijima, B., Smith, A., Aeby, G. S. & Callahan, S. M. Vibrio owensii induces the tissue loss disease Montipora white syndrome in the Hawaiian reef coral Montipora capitata. PLoS ONE 7, e46717 (2012).
Google Scholar
Mouchka, M. E., Hewson, I. & Harvell, C. D. Coral-associated bacterial assemblages: current knowledge and the potential for climate-driven impacts. Integr. Comp. Biol. 50, 662–674 (2010).
Google Scholar
Glasl, B., Herndl, G. J. & Frade, P. R. The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance. ISME J. 10, 2280–2292 (2016).
Google Scholar
Peixoto, R. S. et al. Beneficial Microorganisms for Corals (BMC): proposed mechanisms for coral health and resilience. Front. Microbiol. 8, 341 (2017).
Google Scholar
Mueller, E. A., Wisnoski, N. I., Peralta, A. L. & Lennon, J. T. Microbial rescue effects: how microbiomes can save hosts from extinction. Funct. Ecol. 34, 2055–2064 (2020).
Google Scholar
Leite, D. C. A. et al. Coral bacterial-core abundance and network complexity as proxies for anthropogenic pollution. Front. Microbiol. 9, 833 (2018).
Google Scholar
Fragoso Ados Santos, H. et al. Impact of oil spills on coral reefs can be reduced by bioremediation using probiotic microbiota. Sci. Rep. 5, 18268 (2015).
Google Scholar
Silva, D. P. et al. Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites. Microbiome 9, 118 (2021).
Google Scholar
Welsh, R. M. et al. Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled by Halobacteriovorax predators. PeerJ 5, e3315 (2017).
Google Scholar
Santoro, E. P. et al. Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality. Sci. Adv. 7, eabg3088 (2021).
Google Scholar
Assis, J. M. et al. Delivering Beneficial Microorganisms for Corals: rotifers as carriers of probiotic bacteria. Front. Microbiol. 11, 608506 (2020).
Google Scholar
Damjanovic, K., Blackall, L. L., Webster, N. S. & van Oppen, M. J. H. The contribution of microbial biotechnology to mitigating coral reef degradation. Microb. Biotechnol. 10, 1236–1243 (2017).
Google Scholar
van Oppen, M. J. H. & Blackall, L. L. Coral microbiome dynamics, functions and design in a changing world. Nat. Rev. Microbiol. 17, 557–567 (2019).
Google Scholar
Sweet, M. et al. Insights into the cultured bacterial fraction of corals. mSystems 6, e0124920 (2021).
Google Scholar
Brussaard, C. P. D., Baudoux, A.-C. & Rodríguez-Valera, F. in The Marine Microbiome: An Untapped Source of Biodiversity and Biotechnological Potential (eds Stal, L. J. & Cretoiu, M. S.) 155–183 (Springer International, 2016).
Levin, R. A., Voolstra, C. R., Weynberg, K. D. & van Oppen, M. J. H. Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts. ISME J. 11, 808–812 (2017).
Google Scholar
Messyasz, A. et al. Coral bleaching phenotypes associated with differential abundances of nucleocytoplasmic large DNA viruses. Front. Mar. Sci. https://doi.org/10.3389/fmars.2020.555474 (2020).
Google Scholar
Thurber, R. L. V. et al. Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proc. Natl Acad. Sci. USA 105, 18413–18418 (2008).
Google Scholar
Sweet, M. & Bythell, J. The role of viruses in coral health and disease. J. Invertebr. Pathol. 147, 136–144 (2017).
Google Scholar
Thurber, R. V., Payet, J. P., Thurber, A. R. & Correa, A. M. S. Virus–host interactions and their roles in coral reef health and disease. Nat. Rev. Microbiol. 15, 205–216 (2017). This paper reviews the role of viruses in coral holobiont biology.
Google Scholar
Frazão, N., Sousa, A., Lässig, M. & Gordo, I. Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut. Proc. Natl Acad. Sci. USA 116, 17906–17915 (2019).
Google Scholar
Lepage, P. et al. Dysbiosis in inflammatory bowel disease: a role for bacteriophages? Gut 57, 424–425 (2008).
Google Scholar
Barr, J. J. et al. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc. Natl Acad. Sci. USA 110, 10771–10776 (2013).
Google Scholar
Silveira, C. B. & Rohwer, F. L. Piggyback-the-winner in host-associated microbial communities. NPJ Biofilms Microbiomes 2, 16010 (2016).
Google Scholar
Roach, T. N. F. et al. A multiomic analysis of in situ coral–turf algal interactions. Proc. Natl Acad. Sci. USA 117, 13588–13595 (2020).
Google Scholar
Cárdenas, A. et al. Coral-associated viral assemblages from the central Red Sea align with host species and contribute to holobiont genetic diversity. Front. Microbiol. 11, 572534 (2020).
Google Scholar
Bondy-Denomy, J. & Davidson, A. R. When a virus is not a parasite: the beneficial effects of prophages on bacterial fitness. J. Microbiol. 52, 235–242 (2014).
Google Scholar
Weynberg, K. D., Voolstra, C. R., Neave, M. J., Buerger, P. & van Oppen, M. J. H. From cholera to corals: viruses as drivers of virulence in a major coral bacterial pathogen. Sci. Rep. 5, 17889 (2015).
Google Scholar
Silveira, C. B. et al. Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes. BMC Genomics 21, 126 (2020).
Google Scholar
Soffer, N., Brandt, M. E., Correa, A. M. S., Smith, T. B. & Thurber, R. V. Potential role of viruses in white plague coral disease. ISME J. 8, 271–283 (2014).
Google Scholar
Weynberg, K. D. et al. Prevalent and persistent viral infection in cultures of the coral algal endosymbiont Symbiodinium. Coral Reefs 36, 773–784 (2017).
Google Scholar
Brüwer, J. D., Agrawal, S., Liew, Y. J., Aranda, M. & Voolstra, C. R. Association of coral algal symbionts with a diverse viral community responsive to heat shock. BMC Microbiol. 17, 174 (2017).
Google Scholar
Jacquemot, L. et al. Therapeutic potential of a new jumbo phage that infects Vibrio coralliilyticus, a widespread coral pathogen. Front. Microbiol. 9, 2501 (2018).
Google Scholar
Efrony, R., Loya, Y., Bacharach, E. & Rosenberg, E. Phage therapy of coral disease. Coral Reefs 26, 7–13 (2007).
Google Scholar
Cohen, Y., Joseph Pollock, F., Rosenberg, E. & Bourne, D. G. Phage therapy treatment of the coral pathogen Vibrio coralliilyticus. Microbiologyopen 2, 64–74 (2013).
Google Scholar
Efrony, R., Atad, I. & Rosenberg, E. Phage therapy of coral white plague disease: properties of phage BA3. Curr. Microbiol. 58, 139–145 (2009).
Google Scholar
Atad, I., Zvuloni, A., Loya, Y. & Rosenberg, E. Phage therapy of the white plague-like disease of Favia favus in the Red Sea. Coral Reefs 31, 665–670 (2012).
Google Scholar
Sweet, M. J. & Bulling, M. T. On the importance of the microbiome and pathobiome in coral health and disease. Front. Mar. Sci. 4, 9 (2017).
Google Scholar
Pollock, F. J., Morris, P. J., Willis, B. L. & Bourne, D. G. The urgent need for robust coral disease diagnostics. PLoS Pathog. 7, e1002183 (2011).
Google Scholar
Lesser, M. P., Bythell, J. C., Gates, R. D., Johnstone, R. W. & Hoegh-Guldberg, O. Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data. J. Exp. Mar. Bio. Ecol. 346, 36–44 (2007).
Google Scholar
Roder, C., Arif, C., Daniels, C., Weil, E. & Voolstra, C. R. Bacterial profiling of white plague disease across corals and oceans indicates a conserved and distinct disease microbiome. Mol. Ecol. 23, 965–974 (2014).
Google Scholar
Soffer, N., Zaneveld, J. & Vega Thurber, R. Phage–bacteria network analysis and its implication for the understanding of coral disease. Environ. Microbiol. 17, 1203–1218 (2015).
Google Scholar
Ubeda, C. et al. Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci. Mol. Microbiol. 56, 836–844 (2005).
Google Scholar
Cárdenas, A. et al. Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton. ISME J. 12, 59–76 (2018).
Google Scholar
Anthony, K. et al. New interventions are needed to save coral reefs. Nat. Ecol. Evol. 1, 1420–1422 (2017).
Google Scholar
Allard, S. M. et al. Introducing the mangrove microbiome initiative: identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystems. mSystems https://doi.org/10.1128/mSystems.00658-20 (2020).
Google Scholar
Zickfeld, K. et al. Long-term climate change commitment and reversibility: An EMIC intercomparison. J. Clim. 26, 5782–5809 (2013).
Google Scholar
Humanes, A. et al. A framework for selectively breeding corals for assisted evolution. Preprint at bioRxiv https://doi.org/10.1101/2021.02.23.432469 (2021).
Google Scholar
National Academies of Sciences, Engineering, and Medicine. A Decision Framework for Interventions to Increase the Persistence and Resilience of Coral Reefs (National Academies Press, 2019).
Page, C. A., Muller, E. M. & Vaughan, D. E. Microfragmenting for the successful restoration of slow growing massive corals. Ecol. Eng. 123, 86–94 (2018).
Google Scholar
Schopmeyer, S. A. et al. Regional restoration benchmarks for Acropora cervicornis. Coral Reefs 36, 1047–1057 (2017).
Google Scholar
Suggett, D. J., Edmondson, J., Howlett, L. & Camp, E. F. Coralclip®: a low-cost solution for rapid and targeted out-planting of coral at scale. Restor. Ecol. 28, 289–296 (2020).
Google Scholar
Woesik, R. et al. Differential survival of nursery-reared Acropora cervicornis outplants along the Florida reef tract. Restor. Ecol. 29, e13302 (2021).
Google Scholar
Ware, M. et al. Survivorship and growth in staghorn coral (Acropora cervicornis) outplanting projects in the Florida Keys National Marine Sanctuary. PLoS ONE 15, e0231817 (2020).
Google Scholar
Ladd, M. C., Shantz, A. A., Bartels, E. & Burkepile, D. E. Thermal stress reveals a genotype-specific tradeoff between growth and tissue loss in restored Acropora cervicornis. Mar. Ecol. Prog. Ser. 572, 129–139 (2017).
Google Scholar
Goergen, E. A. & Gilliam, D. S. Outplanting technique, host genotype, and site affect the initial success of outplanted Acropora cervicornis. PeerJ 6, e4433 (2018).
Google Scholar
Chamberland, V. F. et al. New seeding approach reduces costs and time to outplant sexually propagated corals for reef restoration. Sci. Rep. 7, 18076 (2017).
Google Scholar
Craggs, J., Guest, J., Davis, M. & Sweet, M. Completing the life cycle of a broadcast spawning coral in a closed mesocosm. Invertebr. Reprod. Dev. 64, 244–247 (2020).
Google Scholar
Hock, K. et al. Connectivity and systemic resilience of the Great Barrier Reef. PLoS Biol. 15, e2003355 (2017).
Google Scholar
Quigley, K. M., Bay, L. K. & van Oppen, M. J. H. The active spread of adaptive variation for reef resilience. Ecol. Evol. 9, 11122–11135 (2019).
Google Scholar
Sangsawang, L. et al. 13C and 15N assimilation and organic matter translocation by the endolithic community in the massive coral Porites lutea. R. Soc. Open Sci. 4, 171201 (2017).
Google Scholar
Pernice, M. et al. Down to the bone: the role of overlooked endolithic microbiomes in reef coral health. ISME J. 14, 325–334 (2020).
Google Scholar
Kwong, W. K., Del Campo, J., Mathur, V., Vermeij, M. J. A. & Keeling, P. J. A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes. Nature 568, 103–107 (2019).
Google Scholar
Fine, M., Gildor, H. & Genin, A. A coral reef refuge in the Red Sea. Glob. Chang. Biol. 19, 3640–3647 (2013).
Google Scholar
Osman, E. O. et al. Thermal refugia against coral bleaching throughout the northern Red Sea. Glob. Chang. Biol. 24, e474–e484 (2018).
Google Scholar
Camp, E. F. et al. Corals exhibit distinct patterns of microbial reorganisation to thrive in an extreme inshore environment. Coral Reefs 39, 701–716 (2020).
Google Scholar
Grottoli, A. G. et al. Increasing comparability among coral bleaching experiments. Ecol. Appl. 31, e02262 (2021).
Google Scholar
Putnam, H. M., Barott, K. L., Ainsworth, T. D. & Gates, R. D. The vulnerability and resilience of reef-building corals. Curr. Biol. 27, R528–R540 (2017).
Google Scholar
Hagedorn, M. & Spindler, R. The reality, use and potential for cryopreservation of coral reefs. Adv. Exp. Med. Biol. 753, 317–329 (2014).
Google Scholar
Hagedorn, M. et al. Successful demonstration of assisted gene flow in the threatened coral Acropora palmata across genetically-isolated caribbean populations using cryopreserved sperm. Cold Spring Harb. Lab. https://doi.org/10.1101/492447 (2018).
Google Scholar
Hagedorn, M., Spindler, R. & Daly, J. Cryopreservation as a tool for reef restoration: 2019. Adv. Exp. Med. Biol. 1200, 489–505 (2019).
Google Scholar
Daly, J. et al. Successful cryopreservation of coral larvae using vitrification and laser warming. Sci. Rep. 8, 15714 (2018).
Google Scholar
Chakravarti, L. J., Beltran, V. H. & van Oppen, M. J. H. Rapid thermal adaptation in photosymbionts of reef-building corals. Glob. Chang. Biol. 23, 4675–4688 (2017).
Google Scholar
Quigley, K. M., Alvarez Roa, C., Torda, G., Bourne, D. G. & Willis, B. L. Co-dynamics of Symbiodiniaceae and bacterial populations during the first year of symbiosis with Acropora tenuis juveniles. Microbiologyopen 9, e959 (2020).
Google Scholar
Teplitski, M. & Ritchie, K. How feasible is the biological control of coral diseases? Trends Ecol. Evol. 24, 378–385 (2009).
Google Scholar
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