Limpricht KG. Die laubmoose. In: Rabenhorst L (ed). Kryptogamen-Flora von Deutschland, Oesterreich und der Schweiz, Zweite Auflage. 1890. Kummer, Leipzig.
Basilier K. Fixation and uptake of nitrogen in Sphagnum blue-green algal associations. Oikos. 1980;34:239.
Google Scholar
Granhall U, Selander H. Nitrogen fixation in a subarctic mire. Oikos. 1973;24:8.
Basilier K, Granhall U, Stenström T-A. Nitrogen fixation in wet minerotrophic moss communities of a subarctic mire. Oikos. 1978;31:236.
Google Scholar
Basilier K. Moss-associated nitrogen fixation in some mire and coniferous forest environments around Uppsala, Sweden. Lindbergia. 1979;5:84–88.
Google Scholar
Meeks JC. Physiological adaptations in nitrogen-fixing Nostoc–plant symbiotic associations. In: Pawlowski K (ed). Prokaryotic symbionts in plants. 2007. Springer, Berlin, Heidelberg, pp 181–205.
Adams DG. Cyanobacteria in symbiosis with hornworts and liverworts. Cyanobacteria in symbiosis. 2002. Springer, Dordrecht, pp 117-35.
Meeks JC, Elhai J. Regulation of cellular differentiation in filamentous cyanobacteria in free-living and plant-associated symbiotic growth states. Microbiol Mol Biol Rev. 2002;66:94–121.
Google Scholar
Kostka JE, Weston DJ, Glass JB, Lilleskov EA, Shaw AJ, Turetsky MR. The Sphagnum microbiome: new insights from an ancient plant lineage. N Phytol. 2016;211:57–64.
Google Scholar
Granhall U, Hofsten AV. Nitrogenase activity in relation to intracellular organisms in Sphagnum mosses. Physiol Plant. 1976;36:88–94.
van den Elzen E, Kox MAR, Harpenslager SF, Hensgens G, Fritz C, Jetten MSM, et al. Symbiosis revisited: phosphorus and acid buffering stimulate N2 fixation but not Sphagnum growth. Biogeosciences. 2017;14:1111–22.
Yu Z, Loisel J, Brosseau DP, Beilman DW, Hunt SJ. Global peatland dynamics since the last glacial maximum. Geophys Res Lett. 2010;37:1–5.
Lindo Z, Nilsson MC, Gundale MJ. Bryophyte-cyanobacteria associations as regulators of the northern latitude carbon balance in response to global change. Glob Chang Biol. 2013;19:2022–35.
Google Scholar
Carrell AA, Kolton M, Glass JB, Pelletier DA, Warren MJ, Kostka JE, et al. Experimental warming alters the community composition, diversity, and N2 fixation activity of peat moss (Sphagnum fallax) microbiomes. Glob Chang Biol. 2019;25:2993–3004.
Google Scholar
Rai AN, Söderbäck E, Bergman B. Tansley Review No. 116. N Phytol. 2000;147:449–81.
Google Scholar
Adams DG, Duggan PS. Cyanobacteria-bryophyte symbioses. J Exp Bot. 2008;59:1047–58.
Google Scholar
Bay G, Nahar N, Oubre M, Whitehouse MJ, Wardle DA, Zackrisson O, et al. Boreal feather mosses secrete chemical signals to gain nitrogen. N Phytol. 2013;200:54–60.
Google Scholar
Warshan D, Espinoza JL, Stuart RK, Richter RA, Kim S-Y, Shapiro N, et al. Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis. ISME J. 2017;12:1–13.
Stuart RK, Pederson ERA, Weyman PD, Weber PK, Rassmussen U, Dupont CL. Bidirectional C and N transfer and a potential role for sulfur in an epiphytic diazotrophic mutualism. ISME J. 2020;14:3068–78.
Google Scholar
Veličković D, Chu RK, Carrell AA, Thomas M, Paša-Tolić L, Weston DJ, et al. Multimodal MSI in conjunction with broad coverage spatially resolved MS2 increases confidence in both molecular identification and localization. Anal Chem. 2018;90:702–7.
Google Scholar
Nagy G, Veličković D, Chu RK, Carrell AA, Weston DJ, Ibrahim YM, et al. Towards resolving the spatial metabolome with unambiguous molecular annotations in complex biological systems by coupling mass spectrometry imaging with structures for lossless ion manipulations. Chem Commun. 2019;55:306–9.
Google Scholar
Warshan D, Liaimer A, Pederson E, Kim S-Y, Shapiro N, Woyke T, et al. Genomic changes associated with the evolutionary transitions of Nostoc to a plant symbiont. Mol Biol Evol. 2018;35:1160–75.
Google Scholar
Rippka R, Deruelles J, Waterbury JB, Herdman M, Stanier RY. Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J Gen Microbiol. 1979;111:1–61.
Hanson PJ, Riggs JS, Robert Nettles W, Phillips JR, Krassovski MB, Hook LA, et al. Attaining whole-ecosystem warming using air and deep-soil heating methods with an elevated CO2 atmosphere. Biogeosciences. 2017;14:861–83.
Google Scholar
Frank W, Decker EL, Reski R. Molecular tools to study Physcomitrella patens. Plant Biol. 2005;7:220–7.
Google Scholar
Yao Y, Sun T, Wang T, Ruebel O, Northen T, Bowen BP. Analysis of metabolomics datasets with high-performance computing and metabolite atlases. Metabolites. 2015;5:431–2.
Google Scholar
Sumner LW, Amberg A, Barrett D, Beale MH, Beger R, Daykin CA, et al. Proposed minimum reporting standards for chemical analysis. Metabolomics. 2007;3:211–21.
Google Scholar
Anders S, Pyl PT, Huber W. HTSeq—a Python framework to work with high-throughput sequencing data. Bioinformatics. 2015;31:166–9.
Google Scholar
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19:455–77.
Google Scholar
Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. Bioinformatics. 2013;29:1072–5.
Google Scholar
Seemann T. Genome analysis Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30:2068–9.
Google Scholar
Finn RD, Clements J, Eddy SR. HMMER web server: Interactive sequence similarity searching. Nucleic Acids Res. 2011;39:W29–W37.
Google Scholar
Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, et al. MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis. Mol Plant. 2019;12:879–92.
Google Scholar
Black K, Osborne B. An assessment of photosynthetic downregulation in cyanobacteria from the Gunnera-Nostoc symbiosis. N Phytol. 2004;162:125–32.
Google Scholar
Santi C, Bogusz D, Franche C. Biological nitrogen fixation in non-legume plants. Ann Bot. 2013;111:743–67.
Google Scholar
Clymo RS. The growth of Sphagnum: some effects of environment. Br Ecol Soc. 1973;61:849–69.
Lamers LPM, Farhoush C, Van Groenendael JM, Roelofs JGM. Calcareous groundwater raises bogs; the concept of ombrotrophy revisited. J Ecol. 1999;87:639–48.
Nayak S, Prasanna R. Soil pH and its role in cyanobacterial abundance and diversity in rice field soils. Appl Ecol Environ Res. 2007;5:103–13.
Jassey VEJ, Meyer C, Dupuy C, Bernard N, Mitchell EAD, Toussaint ML, et al. To what extent do food preferences explain the trophic position of heterotrophic and mixotrophic microbial consumers in a Sphagnum peatland? Micro Ecol. 2013;66:571–80.
Meeks JC. Symbiosis between nitrogen- fixing cyanobacteria and plants. Symbiosis. 1998;48:266–76.
Pate S, Lindblad P, Atkins A. Planta in coralloid roots of cycad-Nostoc symbioses. Planta. 1988;176:461–71.
Google Scholar
Xie B, Chen DS, Zhou K, Xie YQ, Li YG, Hu GY, et al. Symbiotic abilities of Sinorhizobium fredii with modified expression of purL. Appl Microbiol Biotechnol. 2006;71:505–14.
Google Scholar
Xie B, Chen D, Cheng G, Ying Z, Xie F, Li Y, et al. Effects of the purl gene expression level on the competitive nodulation ability of Sinorhizobium fredii. Curr Microbiol. 2009;59:193–8.
Google Scholar
Giraud E, Moulin L, Vallenet D, Barbe V, Cytryn E, Avarre JC, et al. Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia. Science. 2007;316:1307–12.
Google Scholar
Kim JK, Jang HA, Won YJ, Kikuchi Y, Heum Han S, Kim CH, et al. Purine biosynthesis-deficient Burkholderia mutants are incapable of symbiotic accommodation in the stinkbug. ISME J. 2014;8:552–63.
Google Scholar
An R, Grewal PS. Molecular mechanisms of persistence of mutualistic bacteria Photorhabdus in the entomopathogenic nematode host. PLoS ONE. 2010;5:e13154.
Google Scholar
Zrenner R, Stitt M, Sonnewald U, Boldt R. Pyrimidine and purine biosynthesis and degradation in plants. Annu Rev Plant Biol. 2006;57:805–36.
Google Scholar
Atkins CA, Smith PMC. Translocation in legumes: assimilates, nutrients, and signaling molecules. Plant Physiol. 2007;144:550–61.
Ueda S, Ikeda M, Yamakawa T. Provision of carbon skeletons for amide synthesis in non-nodulated soybean and pea roots in response to the source of nitrogen supply. Soil Sci Plant Nutr. 2008;54:732–7.
Google Scholar
Kaur H, Chowrasia S, Gaur VS, Mondal TK. Allantoin: emerging role in plant abiotic stress tolerance. Plant Mol Biol Rep. 2021;39:648–61.
Paul MJ, Primavesi LF, Jhurreea D, Zhang Y. Trehalose metabolism and signaling. Annu Rev Plant Biol. 2008;59:417–41.
Google Scholar
Iturriaga G, Suárez R, Nova-Franco B. Trehalose metabolism: from osmoprotection to signaling. Int J Mol Sci. 2009;10:3793–810.
Google Scholar
John R, Raja V, Ahmad M, Jan N, Majeed U, Ahmad S, et al. Trehalose: metabolism and role in stress signaling in plants. Stress signaling in plants: genomics and proteomics perspective, Volume 2. 2016. Springer International Publishing, pp 261–75.
Sharma K, Palatinszky M, Nikolov G, Berry D, Shank EA. Transparent soil microcosms for live-cell imaging and non-destructive stable isotope probing of soil microorganisms. Elife. 2020;9:1–28.
Streeter JG. Effect of trehalose on survival of Bradyrhizobium japonicum during desiccation. J Appl Microbiol. 2003;95:484–91.
Google Scholar
Sugawara M, Cytryn EJ, Sadowsky MJ. Functional role of Bradyrhizobium japonicum trehalose biosynthesis and metabolism genes during physiological stress and nodulation. Appl Environ Microbiol. 2010;76:1071–81.
Google Scholar
Suárez R, Wong A, Ramírez M, Barraza A, Orozco MDC, Cevallos MA, et al. Improvement of drought tolerance and grain yield in common bean by overexpressing trehalose-6-phosphate synthase in rhizobia. Mol Plant-Microbe Interact. 2008;21:958–66.
Google Scholar
Mackay MA, Norton RS, Borowitzka LJ. Organic osmoregulatory solutes in cyanobacteria. J Gen Microbiol. 1984;130:2177–91.
Google Scholar
Reed RH, Richardson DL, Warr SRC, Stewart WDP. Carbohydrate accumulation and osmotic stress in cyanobacteria. J Gen Microbiol. 1984;130:1–4.
Google Scholar
Csonka LN. Physiological and genetic responses of bacteria to osmotic stress. Microbiol Rev. 1989,53:121–47.
Moore EK, Hopmans EC, Rijpstra WIC, Villanueva L, Dedysh SN, Kulichevskaya IS, et al. Novel mono-, di-, and trimethylornithine membrane lipids in northern wetland planctomycetes. Appl Environ Microbiol. 2013;79:6874–84.
Google Scholar
Clifford EL, Varela MM, De Corte D, Bode A, Ortiz V, Herndl GJ, et al. Taurine is a major carbon and energy source for marine prokaryotes in the North Atlantic ocean off the Iberian Peninsula. Micro Ecol. 2019;78:299–312.
Google Scholar
Amin SA, Hmelo LR, van Tol HM, Durham BP, Carlson LT, Heal KR, et al. Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria. Nature. 2015;522:98–101.
Google Scholar
Dixon RA, Paiva NL. Stress-induced phenylpropanoid metabolism. Plant Cell. 1995,7:1085–97.
Payyavula RS, Navarre DA, Kuhl JC, Pantoja A, Pillai SS. Differential effects of environment on potato phenylpropanoid and carotenoid expression. BMC Plant Biol. 2012;12:39.
Google Scholar
Huang J, Gu M, Lai Z, Fan B, Shi K, Zhou YH, et al. Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress. Plant Physiol. 2010;153:1526–38.
Google Scholar
Kouchi H. Large-scale analysis of gene expression profiles during early stages of root nodule formation in a model legume, Lotus japonicus. DNA Res. 2004;11:263–74.
Google Scholar
Chen Y, Li F, Tian L, Huang M, Deng R, Li X, et al. The phenylalanine ammonia lyase gene LjPAL1 is involved in plant defense responses to pathogens and plays diverse roles in Lotus japonicus -rhizobium symbioses. Mol Plant-Microbe Interact. 2017;30:739–53.
Google Scholar
Bragina A, Berg C, Cardinale M, Shcherbakov A, Chebotar V, Berg G. Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle. ISME J. 2012;6:802–13.
Google Scholar
Bragina A, Berg C, Müller H, Moser D, Berg G. Insights into functional bacterial diversity and its effects on Alpine bog ecosystem functioning. Sci Rep. 2013;3:1955.
Google Scholar
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