Litchman, E. et al. Global biogeochemical impacts of phytoplankton: a trait-based perspective. J. Ecol. 103, 1384–1396 (2015).
De Senerpont Domis, L. N. et al. Plankton dynamics under different climatic conditions in space and time. Freshw. Biol. 58, 463–482 (2013).
Reynolds, C. Ecology of Phytoplankton. (Cambridge University Press, 2006).
Phillips, G. et al. Water Framework Directive Intercalibration: Central Baltic Lake Phytoplankton Ecological Assessment Methods. 189 (Join Research Center, 2014).
Ptacnik, R., Solimini, A. & Brettum, P. Performance of a new phytoplankton composition metric along a eutrophication gradient in Nordic lakes. Hydrobiologia 633, 75–82 (2009).
Pollard, A. I., Hampton, S. E. & Leech, D. M. The promise and potential of continental-scale limnology using the U.S. Environmental Protection Agency’s National Lakes. Assessment. Limnol. Oceanogr. Bull. 27, 36–41 (2018).
de Hoyos, C. et al. Water Framework Directive Intercalibration: Mediterranean Lake Phytoplankton Ecological Assessment Methods. 189 (Join Research Center, 2014).
Mischke, U., Riedmüller, U., Hoehn, E., Schönfelder, I. & Nixdorf, B. Description of the German System for Phytoplankton-Based Assessment of Lakes for Implementation of the EU Water Framework Directive (WFD). 31 (Univ. Cottbus, 2008).
Laplace-Treyture, C. & Feret, T. Performance of the Phytoplankton Index for Lakes (IPLAC): A multimetric phytoplankton index to assess the ecological status of water bodies in France. Ecol. Indic. 69, 686–698 (2016).
Xue, Y. et al. Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom. ISME J. 12, 2263–2277 (2018).
Barbe, J. et al. Actualisation de la Méthode de Diagnose Rapide des Plans d’Eau: Analyse Critique des Indices de Qualité des Lacs et Propositions d’Indices de Fonctionnement de l’Écosystème Lacustre. 107 (Cemagref, 2003).
Marchetto, A., Padedda, B., Mariani, M., Luglie, A. & Sechi, N. A numerical index for evaluating phytoplankton response to changes in nutrient levels in deep mediterranean reservoirs. J. Limnol. 68, 106–121 (2009).
Kruk, C., Mazzeo, N., Lacerot, G. & Reynolds, C. S. Classification schemes for phytoplankton: A local validation of a functional approach to the analysis of species temporal replacement. J. Plankton Res. 24, 901–912 (2002).
Reynolds, C. S. Phytoplankton designer – or how to predict compositional responses to trophic-state change. Hydrobiologia 424, 123–132 (2000).
Reynolds, C. S., Huszar, V., Kruk, C., Naselli-Flores, L. & Melo, S. Towards a functional classification of the freshwater phytoplankton. J. Plankton Res. 24, 417–428 (2002).
Mieleitner, J. & Reichert, P. Modelling functional groups of phytoplankton in three lakes of different trophic state. Ecol. Model. 211, 279–291 (2008).
Rangel, L. M., Soares, M. C. S., Paiva, R. & Silva, L. H. S. Morphology-based functional groups as effective indicators of phytoplankton dynamics in a tropical cyanobacteria-dominated transitional river–reservoir system. Ecol. Indic. 64, 217–227 (2016).
Salmaso, N., Naselli-Flores, L. & Padisák, J. Functional classifications and their application in phytoplankton ecology. Freshw. Biol. 60, 603–619 (2015).
Padisák, J., Borics, G., Grigorszky, I. & Soróczki-Pintér, É. Use of phytoplankton assemblages for monitoring ecological status of lakes within the water framework directive: The assemblage index. Hydrobiologia 553, 1–14 (2006).
Borics, G. et al. A new evaluation technique of potamo-plankton for the assessment of the ecological status of rivers. Large Rivers 17, 465–486 (2007).
European Parliament. Directive 2000/60/CE du Parlement Européen et du Conseil du 23 Octobre 2000 Établissant un Cadre pour une Politique Communautaire dans le Domaine de l’Eau. 72 (Communauté Européenne, 2000).
Padisák, J., Crossetti, L. O. & Naselli-Flores, L. Use and misuse in the application of the phytoplankton functional classification: A critical review with updates. Hydrobiologia 621, 1–19 (2009).
Kruk, C. et al. Classification of Reynolds phytoplankton functional groups using individual traits and machine learning techniques. Freshw. Biol. 62, 1681–1692 (2017).
Wentzky, V. C., Tittel, J., Jäger, C. G., Bruggeman, J. & Rinke, K. Seasonal succession of functional traits in phytoplankton communities and their interaction with trophic state. J. Ecol. 108, 1649–1663 (2020).
Olenina, I. et al. Biovolumes and Size-Classes of Phytoplankton in the Baltic Sea. 144 (Baltic Marine Environnment Protection Commission, 2006).
Kremer, C. T., Gillette, J. P., Rudstam, L. G., Brettum, P. & Ptacnik, R. A compendium of cell and natural unit biovolumes for>1200 freshwater phytoplankton species. Ecology 95, 2984–2984 (2014).
Druart, J. C. & Rimet, F. Protocole d’Analyse du Phytoplancton de l’INRA: Prélèvement, Dénombrement et Biovolume. 96 (INRA, 2008).
Rimet, F. & Druart, J.-C. A trait database for phytoplankton of temperate lakes. Ann. Limnol. – Int. J. Limnol. 54, 18 (2018).
John, D. M., Whitton, B. A. & Brook, A. J. The Freshwater Algal Flora of the British Isles: an Identification Guide to Freshwater and Terrestrial Algae. Second Edition. (Cambridge University Press, 2011).
Wehr, J. D., Sheath, R. G. & Kociolek, P. Freshwater Algae of North America: Ecology and Classification. (Academic press, 2015).
Laplace-Treyture, C., Hadoux, E., Plaire, M., Dubertrand, A. & Esmieu, P. PHYTOBS v3.0: Outil de Comptage du Phytoplancton en Laboratoire et de Calcul de l’IPLAC. Version 3.0. Application JAVA. https://hydrobio-dce.inrae.fr/phytobs-software/ (2017).
Hillebrand, H., Dürselen, C. D., Kirschtel, D., Pollinger, U. & Zohary, T. Biovolume calculation for pelagic and benthic microalgae. J. Phycol. 35, 403–424 (1999).
Hutorowicz, A. Opracowanie Standardowych Objętości Komórek do Szacowania Biomasy w Wybranych Taksonów Glonów Planktonowych Wraz z Określeniem Sposobu Pomiarów i Szacowania. 42 (Instytutu Rybactwa Śródlądowego, 2005).
Padisak, J. & Adrian, R. In Methoden der Biologischen Wasseruntersuchung 2. Biologische Gewässeruntersuchung (ed. Friedrich, W. und G.) Biovolumen und Biomasse (Gustav Fischer Verlag, 1999).
NF EN 16695. Qualité de l’eau – Lignes Directrices pour l’Estimation du Biovolume des Microalgues. 106 (2015).
Menden-Deuer, S. & Lessard, E. J. Carbon to volume relationships for dinoflagellates, diatoms, and other protist plankton. Limnol. Oceanogr. 45, 569–579 (2000).
Sieburth, J. M., Smetacek, V. & Lenz, J. Pelagic ecosystem structure: Heterotrophic compartments of the plankton and their relationship to plankton size fractions. Limnol. Oceanogr. 23, 1256–1263 (1978).
Ignatiades, L. Redefinition of cell size classification of phytoplankton – a potential tool for improving the quality and assurance of data interpretation. Mediterr. Mar. Sci. 17, 56 (2015).
Whitton, B. A. Ecology of Cyanobacteria II. Their Diversity in Space and Time. (Springer Verlag, 2012).
Dittmann, E., Gugger, M., Sivonen, K. & Fewer, D. P. Natural product biosynthetic diversity and comparative genomics of the Cyanobacteria. Trends Microbiol. 23, 642–652 (2015).
Sanseverino, I., Conduto, D., Pozzoli, L., Dobricic, S. & Lettieri, T. Algal Bloom and its Economic Impact. 48 (Join Research Center, 2016).
Sanseverino, I., Conduto Antonio, D., Loos, R. & Lettieri, T. Cyanotoxins: Methods and Approaches for their Analysis and Detection. 64 (Join Research Center, 2017).
Meriluoto, J., Spoof, L. & Codd, G. A. Handbook of Cyanobacterial Monitoring and Cyanotoxin Analysis. (John Wiley & Sons, 2017).
Lwoff, A., Van Niel, C. B., Ryan, P. J. & Tatum, E. L. Nomenclature of Nutritional Types of Microorganisms. In Cold Spring Harbor Symposia on Quantitative Biology. XI (5th ed.) 302–303 (1946).
Morris, J. Biology: How Life Works. (W. H. Freeman/Macmillan Learning, 2018).
Laplace-Treyture, C. et al. Phytoplankton morpho-functional trait dataset from French water-bodies. Portail Data INRAE https://doi.org/10.15454/GJGIAH (2020).
Morabito, G., Oggioni, A., Caravati, E. & Panzani, P. Seasonal morphological plasticity of phytoplankton in Lago Maggiore (N. Italy). Hydrobiologia 578, 47–57 (2007).
Naselli-Flores, L., Padisák, J. & Albay, M. Shape and size in phytoplankton ecology: Do they matter? Hydrobiologia 578, 157–161 (2007).
Strathmann, R. R. Estimating the organic carbon content of phytoplankton from cell volume or plasma volume. Limnol. Oceanogr. 12, 411–418 (1967).
Chaffin, J. D., Stanislawczyk, K., Kane, D. D. & Lambrix, M. M. Nutrient addition effects on chlorophyll a, phytoplankton biomass, and heterocyte formation in Lake Erie’s central basin during 2014–2017: Insights into diazotrophic blooms in high nitrogen water. Freshw. Biol. 00, 1–15 (2020).
Hadoux, E. & Laplace-Treyture, C. PHYTOBS: Phytoplankton Counting Tool in Laboratory. Version 1.0. JAVA Application. https://hydrobio-dce.inrae.fr/phytobs-software/ (2009).
Huber Pestalozzi, G. & Thienemann, A. Das Phytoplankton des Susswassers Systematik und Biologie: 5 Teil Chlorophyceae (Grünalgen) Ordnung: Volvocales. (E. Schweizerbart’sche verlagsbuchhandlung, 1974).
Komarek, J., Fott, B. & Huber Pestalozzi, G. Das Phytoplankton des Susswassers Systematik und Biologie: 7 Teil 1 Halfte Chlorophyceae (Grunalgen) Ordnung: Chlorococcales. (E. Schweizerbart’sche verlagsbuchhandlung, 1983).
Coesel, P. F. M. & Meesters, K. J. Desmids of the Lowlands: Mesotaeniaceae and Desmidiaceae of the European Lowlands. (KNNV Publishing, 2007).
Coesel, P. F. M. & Meesters, K. European Flora of the Desmid Genera Staurastrum and Staurodesmus. (KNNV Publishing, 2013).
Starmach, K. Chrysophyceae und Haptophyceae. (VEB Gustav Fischer Verlag, 1985).
Komarek, J. & Anagnostidis, K. Cyanoprokaryota 1.Teil: Chroococcales. (Gustav Fischer, 1999).
Komarek, J. & Anagnostidis, K. Cyanoprokaryota 2.Teil: Oscillatoriales. (Elsevier, 2005).
Komarek, J. Cyanoprokaryota: 3. Teil/Part 3: Heterocytous Genera. (Springer Spektrum Verlag, 2013).
Anses. Evaluation des Risques Liés aux Cyanobactéries et leurs Toxines dans les Eaux Douces. Avis de l’Anses. 438 (Anses, 2020).
Bey, M.-Y. & Ector, L. Atlas des Diatomées des Cours d’Eau de la Région Rhône-Alpes. (DREAL Rhône-Alpes, 2013).
Cox, E. J. Identification of Freshwater Diatoms from Live Material. (Chapman & Hall, 1996).
Druart, J. C. & Straub, F. Description de deux nouvelles Cyclotelles (Bacillariophyceae) de milieux alcalins et eutrophes: Cyclotella costei nov. sp. et Cyclotella wuethrichiana nov. sp. Swiss J. Hydrol. 50, 182–188 (1988).
Houk, V. Atlas of Freshwater Centric Diatoms with a Brief Key and Descriptions Part I Melosiraceae, Orthoseiraceae, Paraliaceae and Aulacoseiraceae. vol. 1 (Czech Phycological Society, Prague & Palacký University Olomouc, 2003).
Houk, V. & Klee, R. Atlas of freshwater centric diatoms with a brief key and descriptions Part II Melosiraceae and Aulacoseiraceae (Supplement to Part I). Fottea J. Czech Phycol. Soc. 7, 85–255 (2007).
Houk, V., Klee, R. & Tanaka, H. Atlas of Freshwater Centric Diatoms with a Brief Key and Descriptions Part IV Stephanodiscaceae B. vol. 14 (Czech Phycological Society, Prague & Palacký University Olomouc, 2014).
Houk, V., Klee, R. & Tanaka, H. Atlas of Freshwater Centric Diatoms with a Brief Key and Descriptions Part III Steogabiduscaceae A Cyclotella, Tertiarius, Discostella. vol. 10 (Czech Phycological Society, Prague & Palacký University Olomouc, 2010).
Houk, V., Klee, R. & Tanaka, H. Atlas of freshwater centric diatoms with a brief key and descriptions: second emended edition of Part I and II Melosiraceae, Orthoseiraceae, Paraliaceae and Aulacoseiraceae. Fottea J. Czech Phycol. Soc. 17, 1–615 (2017).
Krammer, K. & Lange Bertalot, H. Bacillariophyceae. 1. Teil: Naviculaceae. (Specktrum Akademischer Verlag GmbH Heidelberg, 1999).
Krammer, K. & Lange Bertalot, H. Bacillariophyceae. 4. Teil: Achnanthaceae Kritische Ergänzungen zu Achnanthes s.l., Bavicula s. str., Gomphonema. (Spektrum, 2004).
Krammer, K. & Lange Bertalot, H. Bacillariophyceae. 2. Teil: Bacillariaceae, Epithemiaceae, Surirellaceae. (Elsevier, 2007).
Krammer, K. & Lange-Bertalot, H. Bacillariophyceae. 3. Teil: Centrales, Fragilariaceae, Eunotiaceae. (Gustav Fischer Verlag, 2004).
Lange-Bertalot, H., Hofmann, G., Werum, M. & Cantonati, M. Freshwater Benthic Diatoms of Central Europe: Over 800 Common Species Used in Ecological Assessment. (Koeltz Botanical Books, 2017).
Siver, P. A. et al. Observations on Fragilaria longifusiformis comb. nov. et nom. nov. (Bacillariophyceae), a widespread planktic diatom documented from North America and Europe. Phycol. Res. 54, 183–192 (2006).
Popovsky, J. & Pfiester, L. A. Dinophyceae (Dinoflagellida). (Gustav Fischer Verlag, 1990).
Moestrup, Ø. & Calado, A. J. Dinophyceae. vol. 6 (Spektrum Akademischer Verlag, 2018).
Huber Pestalozzi, G. Das Phytoplankton des Susswassers Systematik und Biologie: 4 Teil Euglenophyceen. (E. Schweizerbart’sche verlagsbuchhandlung, 1969).
Ettl, H. Xanthophyceae: 1. Teil. (Gustav Fischer Verlag, 1978).
Rieth, A. Xanthophyceae: 2. Teil. (Gustav Fischer Verlag, 1980).
Source: Ecology - nature.com
