Philippa Kaur

Model 1: Evolution of multiple mating and mate monopolisation under ancestral monogamyIn all models, I assume a large population with a 1:1 sex ratio. I begin with what is possibly the simplest model set-up for deriving Bateman functions in a scenario that is completely symmetrical aside from gamete number. Assume a monogamous, externally fertilising population where parents pair up and release their gametes into a nest. That is, every individual in the initial population participates in exactly one fertilisation event (the equivalent of a mating). Now consider a mutant individual that can attract multiple mates of the opposite type to release gametes into its nest, with no competition from other individuals of its own type. This simple set-up avoids asymmetries arising from internal fertilisation, and the complication of direct gamete competition for the multiply mating mutant individual (which is examined in Models 2–3), placing focus directly on the core of the problem: the asymmetry arising in fertilisation from imbalanced gamete numbers. All gametes are released in one burst by all individuals, but the focal individual may achieve ‘multiple matings’ simply by monopolising multiple mates at its nest. The reproductive success of the focal individual is then equivalent to the number of fertilisations that take place in that nest. Our aim is to understand how the reproductive success of an individual deviating from the monogamous population strategy and instead mating with (hat{m}) individuals of the opposite type is altered. A strong positive relationship between (hat{m}) and reproductive success then indicates a steep Bateman gradient. If Bateman’s assertion is correct, the resulting gradient should be steeper for the type that produces the larger number of gametes. Note that there is a game-theoretical25 flavour to this setting, where the focus is on the fitness of a rare mutant in a population with a fixed resident strategy.The two types are labelled with x and y, which could correspond to the two sexes, depending on what gamete numbers are assigned to them. The number of gametes produced by a single individual is labelled nx and ny, and the total number of gametes in a nest (or more generally, a fertilisation arena which could be internal or external) is labelled with Nx and Ny. To compute the number of fertilisations in a nest with a total of Nx and Ny gametes, I use a fertilisation function first derived by Togashi et al.24 purely from biophysical principles, treating the two gamete types symmetrically, with no pre-existing assumptions about differences between females and males or their gametes (for a broader context and comparison to other functions, see Table 1 and function F7 in19). Any sex-specific differences arise only retrospectively after different gamete numbers are assigned to x and y of which either one could be male or female. The fertilisation function is (fleft({N}_{x},{N}_{y}right)={N}_{x}{N}_{y}frac{{e}^{a{N}_{x}}-{e}^{a{N}_{y}}}{{{N}_{x}e}^{a{N}_{x}}-{N}_{y}{e}^{a{N}_{y}}}), where a is a parameter controlling fertilisation efficiency (for the special case Nx = Ny the function is defined as (fleft({N}_{x},{N}_{y}right)=frac{a{N}_{x}^{2}}{1+a{N}_{x}})19,24, which is also the limit of f when Ny → Nx).In a monogamous resident pair, we have simply Nx = nx and Ny = ny. But if a mutant individual of type x is able to attract (hat{m}) fertilisation partners of type y, then for that individual ({N}_{y}=hat{m}{n}_{y}), and the corresponding Bateman function is$${b}_{x}left(hat{m}right)=fleft({N}_{x},{N}_{y}right)=fleft({n}_{x},hat{m}{n}_{y}right)$$
(1)
where the fertilisation function f is as described above. Because of symmetry, the corresponding function for y is found simply by swapping x and y. This function can reproduce the characteristic Bateman gradient asymmetry as gamete numbers diverge (progressing from isogamy to anisogamy in Fig. 1), showing how Bateman’s assertion follows from biophysical effects that arise from unequal numbers of fusing particles: the fertilisation function f is derived solely from such biophysical effects, not from any sex-specific assumptions. Equation (1) makes no reference to sexes, and they only become specified when values are assigned to nx and ny. For example, if nx = 10 and ny = 10,000, the female Bateman function is ({b}_{x}left(hat{m}right)) and the male Bateman function ({b}_{y}left(hat{m}right)), where for the latter all xs in Eq. (1) are replaced with ys and vice versa. The labels x and y are truly just labels. While there are inevitably assumptions built into the equations, crucially we can be certain there are no sex-specific assumptions. Yet the typical shapes reminiscent of Bateman gradients arise from the model when different values are specified for nx and ny (Fig. 1).Fig. 1: The Bateman function of Eq. (1).This figure shows how the basic Bateman gradient asymmetry arises from simple biophysics and mathematics of fertilisation. The population is monogamous aside from a mutant individual, whose number of fertilisation partners (‘matings’) varies on the horizontal axes within panels. a–d show the effect of variation in sex-specific gamete numbers under efficient fertilisation, while e–h show the effect of variation in sex-specific gamete numbers under inefficient fertilisation. Parameter values used are shown in the figure. Females (gamete number nx) are indicated by blue crosses and connecting lines, while males (gamete number ny) are indicated by black dots and connecting lines. Under isogamy, females and males are undefined, and the two colours overlap. The typical sex-specific shapes of Bateman gradients arise from a single equation (which itself is not sex-specific) when a difference in gamete numbers is assigned to nx and ny, confirming Bateman’s intuition that the primary cause of the difference in selection is that females produce fewer gametes than males. The entire range of gamete number ratios presented in the figure is observed in nature, from equal gamete size in many unicellular organisms39 to vertebrates, where sperm count per ejaculate can commonly exceed 109 (see ref. 40 and Supplementary Information therein).Full size imageGamete limitation changes the results quantitatively so that under conditions of poor fertilisation efficiency a larger imbalance in gamete numbers is needed for Bateman gradients to diverge to a similar extent. However, even under inefficient fertilisation, the Bateman gradients do not reverse.Model 2: An external fertiliser model with population-level polygamy and gamete competitionModel 1 presented the simplest possible scenario, where all individuals except a rare mutant mate only once, and gamete competition (sperm competition26, but without assigning either gamete type to be sperm) was thus excluded for the focal mutant individual. Now I generalise from this to a situation that remains entirely symmetrical, but where the resident number of matings can take on any value, and then derive the Bateman function for a rare mutant that deviates from this population-level value. This set-up allows for gamete competition for the focal mutant individual, a crucial addition because of the empirical and theoretical importance of sperm competition26, as well as earlier theory suggesting that polyandry decreases the sex difference in Bateman gradients2.The biological set-up is such that there is a large population and a large number of patches (fertilisation arenas) where multiple individuals of both sexes can release their gametes for fertilisation. After all individuals have released their gametes, those in each patch mix freely and fertilisations take place randomly. Set up in this way, the model is again identical from the perspective of both sexes, and gamete number can be isolated as the sole possible causal factor in any subsequent differences that may arise, extending from the initially monogamous and gamete competition-free scenario of Model 1. All individuals of both sexes are assumed to initially have the same strategy: to divide their nx or ny gametes equally between m patches, and distribute themselves in such a way that gametes from m individuals of each type release gametes into each patch (the number of individuals of each sex per patch need not necessarily be strictly equal to m, but this is the simplest assumption to account for the fact that gamete competition tends to increase with multiple ‘matings’). Now, if a rare x mutant divides its gametes evenly into (hat{m}) randomly selected patches, its gamete number per patch and consequently competitiveness in each patch is altered. Therefore, gametes of a mutant of type x will gain, on average, a fraction ({c}_{x}=left({n}_{x}/hat{m}right)/{N}_{x}) of the fertilisations in that patch, where ({N}_{x}={n}_{x}/hat{m}+(m-1){n}_{x}/m). To compute the number of realised fertilisations in a patch, I use the same fertilisation function as in Model 1, where the mutant number of gametes in a patch is Nx as above and the number of gametes of the opposite type is ({N}_{y}=mfrac{{n}_{y}}{m}={n}_{y}). All the components are now in place to write down the Bateman function corresponding to this scenario, for a mutant of type x:$${b}_{x}left(hat{m},mright)=hat{m}{c}_{x}fleft({N}_{x},{N}_{y}right)$$
(2)
where cx, Nx and Ny are as defined above, and the fertilisation function f is as in Model 1. For completeness, define bx(0, m) = 0, which is necessarily true, but useful to define separately because division by 0 renders Eq. (2) formally undefined when (hat{m}=0).As in Model 1, Eq. (2) makes no reference to sexes, and they only become specified when values are assigned to nx and ny (Fig. 2).Fig. 2: The Bateman function of Eq. (2) for an externally fertilising population with potential for population-wide polygamy and gamete competition.Results are shown for two values of resident matings (m = 1 and m = 2). a–h show the effect of variation in sex-specific gamete numbers and in fertilisation efficiency with m = 1, while i–p show the same with m = 2. Parameter values used are shown in the figure. The value m = 2 is used here because it is comparable to the mean number of matings in Bateman’s1 work (see Fig. 3 for corresponding results with internal fertilisation, but note that the aim of the models is not to quantitatively reproduce Bateman’s results). Females (gamete number nx) are indicated by blue crosses and connecting lines, while males (gamete number ny) are indicated by black dots and connecting lines. Under isogamy, females and males are undefined, and the two colours overlap. Further variation in m is examined in Fig. 4.Full size imageModel 3: An internal fertiliser modelModels 1–2 were set up with the central aim of full symmetry and exclusion of any sex-specific assumptions. Internal fertilisation breaks this symmetry by introducing a sex-specific assumption other than gamete number. Bateman gradients are, however, most commonly applied to situations with internal fertilisation where females are gamete recipients and males are gamete donors27. I therefore construct a model accounting for internal fertilisation. Where Eqs. (1) and (2) allowed no sex differences aside from gamete number, here I additionally consider the fact that females receive gametes while males donate them.As in model 2, there is a very large population, and I assume that in the resident population, all females and males mate exactly m times. It is then considered how a rare mutant individual’s (of either sex) fitness depends on its number of matings (hat{m}).I use the same fertilisation function as in Models 1-2. Consider first the female perspective (labelled with x). A female produces nx gametes and retains them internally. Each female mates with m males, who also mate with m females, dividing their gametes evenly over these matings. Therefore a mutant female receives (hat{m}frac{{n}_{y}}{m}) male gametes, and her reproductive success is$${b}_{x}left(hat{m},mright)=fleft({n}_{x},hat{m}frac{{n}_{y}}{m}right)$$
(3)
A mutant male, on the other hand, mates with (hat{m}) females, each of which mates with m−1 additional males. Therefore, the mutant male’s mating partners will receive a total of ({{N}_{y}=n}_{y}/hat{m}+(m-1){n}_{y}/{m}) male gametes. Thus, the mutant male gains a fraction ({c}_{y}=left({n}_{y}/hat{m}right)/{N}_{y}) of the fertilisations with each female, while the total reproductive success per female is f(nx,Ny). The mutant male’s reproductive success is therefore$${b}_{y}left(hat{m},mright)=hat{m}{c}_{y}fleft({n}_{x},{N}_{y}right)$$
(4)
To avoid division by 0, we can again define by (0, m) = 0, analogous to Model 2. In contrast to Models 1–2, there are now separate equations for each sex because of the additional sex-specific assumption of internal fertilisation, but no further sex-specific assumptions are used in their derivation. Visually the Bateman functions (Fig. 3) are nevertheless very similar to Model 2, and again reproduce the sex-specific shapes first proposed by Bateman1 when fertilisation is efficient. However, an interesting exception arises when relatively weak asymmetry in gamete numbers is combined with inefficient fertilisation and gamete limitation. When these conditions are combined with internal fertilisation, Bateman gradients can theoretically be reversed.Fig. 3: The Bateman functions of Eqs. (3) and (4) for internal fertilisation.Where Figs. 1 and 2 show that the sex-specific shapes of Bateman functions are ultimately caused by differences in gamete number, Fig. 3 shows that internal fertilisation does not invalidate this outcome when fertilisation is efficient. As in Fig. 2, results are shown for two values of resident matings (1 and 2), and the value m = 2 is used because it is comparable to the mean number of matings in Bateman’s1 work. a–h show the effect of variation in sex-specific gamete numbers and in fertilisation efficiency with m = 1, while i–p show the same with m = 2. Parameter values used are shown in the figure. Inefficient fertilisation combined with relatively low asymmetry in gamete numbers and the added asymmetry of internal fertilisation can in principle reverse the Bateman gradients (second and fourth row). Females (gamete number nx) are indicated by blue crosses and connecting lines, while males (gamete number ny) are indicated by black dots and connecting lines.Full size image More

Experimental designThe comparative field microcosm experiments were conducted on Laojun Mountain in China (26.6959 N; 99.7759 E) in September–October 2013, and on Balggesvarri Mountain in Norway (69.3809 N; 20.3483 E) in July 2013, designed to be broadly representative of subtropical and subarctic climatic zones, respectively, as first reported in Wang et al.29. In the Laojun Mountain region, mean annual temperatures ranged from 4.2 to 12.9 °C, with July mean temperatures of 17–25 °C. In the Balggesvarri Mountain region, mean annual temperatures ranged from −2.9 to 0.7 °C, with July mean temperatures of 8–16 °C. The experiments were characterised by an aquatic ecosystem with consistent initial DOM composition but different locally colonised microbial communities and newly produced endogenous DOM. While allowing us to minimise the complexity of natural ecosystems, the experiment provided a means for investigating DOM-microbe associations at large spatial scales by controlling the initial DOM supply. Briefly, we selected locations with five different elevations on each mountainside. The elevations were 3822, 3505, 2915, 2580 and 2286 m a.s.l. on Laojun Mountain in China, and 750, 550, 350, 170 and 20 m a.s.l. on Balggesvarri Mountain in Norway. At each elevation, we established 30 aquatic microcosms (1.5 L bottle) composed of 15 g of sterilised lake sediment and 1.2 L of sterilised artificial lake water at one of ten nutrient levels of 0, 0.45, 1.80, 4.05, 7.65, 11.25, 15.75, 21.60, 28.80 and 36.00 mg N L−1 of KNO3 in the overlying water. To compensate for nitrate additions shifting stoichiometric ratios, KH2PO4 was added to the bottles so that the N/P ratio of the initial overlying water was 14.93, which was similar to the annual average ratio in Taihu Lake during 2007 (that is, 14.49). Thus, we use “nutrient enrichment” to indicate a series of targeted nutrient levels of both nitrate and phosphate, the former of which was used to represent nutrient enrichment in the statistical analyses. Each nutrient level was replicated three times. The lake sediments were obtained from the centre of Taihu Lake, China, and were aseptically canned per bottle after autoclaving at 121 °C for 30 min. Nutrient levels for the experiments were selected based on conditions of the eutrophic Taihu Lake, and the highest nitrate concentration was based on the maximum total nitrogen in 2007 (20.79 mg L−1; Fig. S19). We chose the nutrient level of this year because a massive cyanobacteria bloom in Taihu Lake happened in May 2007 and initiated an odorous drinking water crisis in the nearby city of Wuxi.The microcosms were left in the field for one month allowing airborne bacteria to freely colonise the sediments and water. To keep the microbial dispersal events as natural as possible, we did not cover the experimental microcosms in case of rainfall. To avoid or minimize potential influence of extreme nature events, we (i) left the top 20% of each microcosm empty to prevent water from overflowing during heavy rains, and (ii) checked the experimental sites twice during each experimental period, and added sterilized water to obtain a final volume of approximately 1.2 L. The bottom of our microcosm was buried into the local soils by 10% of the bottle height, partly to reduce UV exposure to sediments. More considerations of the experimental design were detailed in the Supplementary Methods. To avoid the effects of daily temperature variation, we measured the water temperature and pH within 2 h before noon at all elevations in the day before the final sample collection. At the end of the experimental period, we aseptically sampled the water and sediments of the 300 bottles (that is, 2 mountains × 5 elevations × 10 nutrient levels × 3 replicates) for the following analyses of physiochemical variables, bacterial community and DOM composition.Physiochemical variables and bacterial communityWe measured environmental variables, namely, the total nitrogen (TN), total phosphorus (TP), dissolved nutrients (that is, NOx−, NO2−, NH4+ and PO43−), total organic carbon (TOC), dissolved organic carbon (DOC) and chlorophyll a (Chl a) in the sediments, and the NO3−, NO2−, NH4+, PO43− and pH in the overlying water (Table S2, Fig. S20), according to Wang et al.29.The sediment bacteria were examined using high-throughput sequencing of 16S rRNA genes. The sequences were processed in QIIME (v1.9)45 and OTUs were defined at 97% sequence similarity. The bacterial sequences were rarefied to 20,000 per sample. Further details on physicochemical and bacterial community analyses are available in Wang et al.29.ESI FT-ICR MS analysis of DOM samplesHighly accurate mass measurements of DOM within the sediment samples were conducted using a 15 Tesla solariX XR system, a ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS, Bruker Daltonics, Billerica, MA) coupled with an electrospray ionization (ESI) interface, as demonstrated previously46 with some modifications. It should be noted that FT-ICR MS does not identify molecules, but only molecular formulae in terms of elemental composition and there can be many molecular structures sharing the same elemental compositions. DOM was solid-phase extracted (SPE) with Agilent VacElut resins before FT-ICR MS measurement47 with minor modifications. Briefly, an aliquot of 0.7 g freeze-dried sediment was sonicated with 30 ml ultrapure water for 2 h, and centrifuged at 5000 × g for 20 min. The extracted water was filtered through the 0.45 μm Millipore filter and further acidified to pH 2 using 1 M HCl. Cartridges were drained, rinsed with ultrapure water and methanol (ULC-MS grade), and conditioned with pH 2 ultrapure water. Calculated volumes of extracts were slowly passed through cartridges based on DOC concentration. Cartridges were rinsed with pH 2 ultrapure water and dried with N2 gas. Samples were finally eluted with methanol into precombusted amber glass vials, dried with N2 gas and stored at −20 °C until DOM analysis. The extracts were continuously injected into the standard ESI source with a flow rate of 2 μl min−1 and an ESI capillary voltage of 3.5 kV in negative ion mode. One hundred single scans with a transient size of 4 mega word (MW) data points, an ion accumulation time of 0.3 s, and within the mass range of m/z 150–1200, were co-added to a spectrum with absorption mode for phase correction, thereby resulting in a resolving power of 750,000 (FWHM at m/z 400). All FT-ICR mass spectra were internally calibrated using organic matter homologous series separated by 14 Da (-CH2 groups). The mass measurement accuracy was typically within 1 ppm for singly charged ions across a broad m/z range (150–1200 m/z).Data Analysis software (BrukerDaltonik v4.2) was used to convert raw spectra to a list of m/z values using FT-MS peak picker with a signal-to-noise ratio (S/N) threshold set to 7 and absolute intensity threshold to the default value of 100. Putative chemical formulae were assigned using the software Formularity (v1.0)48 following the Compound Identification Algorithm49. In total, 19,538 molecular formulas were putatively assigned for all samples (n = 300) based on the following criteria: S/N  > 7, and mass measurement error  0.80, P ≤ 0.001; Fig. S9). Similar conclusions were also obtained with either OTUs or genera when relating the pairwise distances of molecular traits with SparCC correlation coefficient ρ values among DOM molecules in Fig. 4c. To reduce type I errors in the correlation calculations created by low-occurrence genera or molecules, the majority rule was applied; that is, we retained genera or molecules that were observed in more than half of the total samples (≥75 samples) in China or Norway. The filtered table, including 1340 and 1246 DOM molecules, and 75 and 49 bacterial genera in China and Norway, respectively, was then used for pairwise correlation calculation of DOM and bacteria using SparCC with default parameters35.Finally, bipartite network analysis at a molecular level was performed to quantify the specialization of DOM-bacteria networks (Box 1). The specialization considers interaction abundance and is standardised to account for heterogeneity in the interaction strength and species richness, which describes the levels of “vulnerability” of DOM molecules and “generality” of bacterial taxa27. The threshold correlation for inclusion in bipartite networks was |ρ| = 0.30 to exclude weak interactions and we retained the adjacent matrix with only the interactions between DOM and bacteria. We then constructed two types of interaction networks (i.e., negative and positive networks) based on negative and positive correlation coefficients (SparCC ρ ≤ −0.30 and ρ ≥ 0.30, respectively). According to resource-consumer relationships, negative networks likely indicate the degradation of larger molecules into smaller structures, while positive networks may suggest the production of new molecules via degradation or biosynthetic processes. The SparCC ρ values were multiplied by 10,000 and rounded to integers, and the absolute values were taken for negative networks to enable the calculations of specialization indices. A separate negative and positive sub-network was obtained for each microcosm by selecting the DOM molecules and bacterial taxa in each sample based on its bacterial and DOM compositions. For the network level analysis, we calculated H2′, a measure of specialization27, for each network:$${H}_{2}=-mathop{sum }limits_{i{{mbox{=}}}1}^{i}mathop{sum }limits_{j{{mbox{=}}}1}^{j}{{mbox{(}}}{{{mbox{p}}}}_{{ij}}{{{{{{rm{ln}}}}}}}{{{mbox{p}}}}_{{ij}}{{mbox{)}}}$$
(2)
$${H}_{2}{prime} =frac{{H}_{2{max }}{-}{H}_{2}}{{H}_{2{max }}{-}{H}_{2{min }}}$$
(3)
where ({{{mbox{p}}}}_{{ij}}{{mbox{=}}}{{{mbox{a}}}}_{{ij}}{{mbox{/}}}m), represents the proportion of interactions in a i × j matrix. ({{{mbox{a}}}}_{{ij}}) is the number of interactions between DOM molecule i and bacterial genus j, which is also referred as “link weight”. m is the total number of interactions between all DOM molecules and bacterial genera. H2′ is the standardised H2 against the minimum (H2min) and maximum (H2max) possible for the same distribution of interaction totals. For the molecular level analysis, we calculated the specialization index Kullback–Leibler distance (d′) for DOM molecules (di′) and bacterial genera (dj′), which describes the levels of “vulnerability” of DOM molecules and “generality” of bacterial genera, respectively:$${d}_{i}=mathop{sum }limits_{j=1}^{j}left(frac{{{{mbox{a}}}}_{{ij}}}{{{{mbox{A}}}}_{i}}{{{mbox{ln}}}}frac{{{{mbox{a}}}}_{{ij}}m}{{{{mbox{A}}}}_{i}{{{mbox{A}}}}_{j}}right)$$
(4)
$${d}_{i}{prime} =frac{{d}_{i}-{d}_{{min }}}{{d}_{{max }}-{d}_{{min }}}$$
(5)
where ({A}_{i}) = (mathop{sum }limits_{j{{mbox{=}}}1}^{j}{{{mbox{a}}}}_{{ij}}) and ({A}_{j}) = (mathop{sum }limits_{i{{mbox{=}}}1}^{i}{{{mbox{a}}}}_{{ij}}), are the total number of interactions of DOM molecule i and bacterial genus j, respectively. di′ is the standardised di against the minimum (dmin) and maximum (dmax) possible for the same distribution of interaction totals. The equations of dj′ are analogous to di′, replacing j by i. Weighted means of d′ for DOM were calculated for each network as the sum of the product of d′ for each individual molecule i (di′) and relative intensity Ii divided by the sum of all intensities d′  = Ʃ(di′ × Ii)/Ʃ(Ii). Weighted means of d′ for bacteria were calculated as the sum of the d′ of each individual bacterial genus j (dj′) and relative abundance of bacterial genus Ij divided by the sum of all abundance. All calculations were performed using the R package FD V1.0.12. The observed H2′ and d′ values ranged from 0 (complete generalization) to 1 (complete specialization)28 (Fig. S21). Specifically, elevated H2′ or d′ values indicate a high degree of specialization, while lower values suggest increased generalization, that is, higher vulnerability of DOM and/or higher generality of microbes. To directly compare the network indices across the elevations or nutrient enrichment levels, we used a null modelling approach. We standardised the three observed specialization indices (Sobserved; that is, H2′, d′ of DOM, and d′ of bacteria) by calculating their z-scores63 using the equation:$${z}_{S}=({S}_{{{{{{rm{observed}}}}}}}-overline{{{S}}_{{{{{{rm{null}}}}}}}})/({sigma }_{S_{{{{{rm{null}}}}}}})$$
(6)
where (overline{{{S}}_{{{{{{rm{null}}}}}}}}) and ({sigma }_{S_{{{{{rm{null}}}}}}}) were, respectively, the mean and standard deviation of the null distribution of S (Snull). One hundred randomised null networks were generated for each bipartite network to derive Snull using the swap.web algorithm, which keeps species richness and the number of interactions per species constant along with network connectance. This null model analysis indicates that interactions between DOM and bacteria were non-random as the observed network specialization indices were generally significantly lower than expected by chance (P  0.05), which tests whether the model structure differs from the observed data, high comparative fit index (CFI  > 0.95) and low standardised root mean squared residual (SRMR  More

Geography and climatology of study areaThe area of study, Ghana, is on the coastal edge of tropical West African, bounded in latitude 4.5° N and 11.5° N and longitude 3.5° W and 1.5° E, and characterized by a tropical monsoon climate system23,24. Figure 1 shows map of the study area indicating the selected twenty two (22) sunshine measurement stations distributed across the four main climatological zones and Table 1 summarizes the geographical positions of selected stations.Figure 1Adapted from Asilevi27.Map of the study area showing all twenty two (22) synoptic stations distributed in four main climatological zones countrywide.Full size imageTable 1 Geographical position and elevation for study sites.Full size tableAtmospheric clarity over the area is closely connected to cloud amount distribution and rainfall activities, largely determined by the oscillatory migration of the Inter-Tropical Discontinuity (ITD), accounting for the West African Monsoon (WAM)25,26.Owing to the highly variable spatiotemporal distribution of cloud amount vis-à-vis rainfall activities, resulting in contrasting climatic conditions in different parts of the region, the country is partitioned by the Ghana Meteorological Agency (GMet) into four main agro-ecological zones namely, the Savannah, Transition, Forest and Coastal zones as shown in Fig. 123. As a result, the region experiences an estimated Global solar radiation (GSR) intensity peaks in April–May and then in October–November, with the highest monthly average of 22 MJm−2 day−1 over the savannah climatic zone and the lowest monthly average of 13 MJm−2 day−1 over the forest climatic zone27.Research datasetsGround-based measurement dataDaily sunshine duration measurement datasets (n) spanning 1983–2018 where derived for estimating Global solar radiation (GSR). The measurements were taken by the Campbell-Stokes sunshine recorder, mounted at the 22 stations shown in Fig. 1, under unshaded conditions to ensure optimum sunlight exposure. The device concentrates sunlight onto a thin strip of sunshine card, which causes a burnt line representing the total period in hours during which sunshine intensity exceeds 120.0 Wm−2 according to World Meteorological Organization (WMO) recommendations27. The as-received daily records were quality control checked by ensuring 0 ≤ n ≤ N, where N is the astronomical day length representing the possible maximum duration of sunshine in hours determined by Eq. 1 from the latitude (ϕ) of the site of interest and the solar declination (δ) computed by Eq. 227:$$ {text{N}} = frac{2}{15}cos^{ – 1} left[ { – tan phi tan {updelta }} right] $$
(1)
$$ {updelta } = 23.45sin left[ {360^{{text{o}}} times frac{{284 + {text{J}}}}{365}} right] $$
(2)
where J represents the number for the Julian day of the year (first January is 1 and second January is 2).NASA-POWER Global solar radiation (GSR) reanalysis dataThe satellite-based Global solar radiation (GSR) dataset for specific longitudes and latitudes of all 22 stations, assessed in the study, were retrieved from the National Aeronautics and Space Administration-Prediction of Worldwide Energy Resources (NASA-POWER) reanalysis repository based on the Modern Era Retrospective-Analysis for Research and Applications (MERRA-2) assimilation model products, developed from Surface Radiation Budget, and spanning equal study period (1983–2018). The datasets are accessible on a daily and monthly temporal resolution scales at 0.5° × 0.5° spatial coverage via a user friendly web-based mapping portal: https://power.larc.nasa.gov/data-access-viewer/17. The advantage of the NASA-POWER reanalysis GSR, is the wide spatial coverage, and thus can be used to develop a high spatial resolution of solar radiation across the study area.The POWER Project analyzes, synthesizes and makes available surface radiation related parameters on a global scale, primarily from the World Climate Research Programme (WCRP), Global Energy and Water cycle Experiment (GEWEX), Surface Radiation Budget (SRB) project (Version 2.9), the Clouds and the Earth’s Radiant Energy System (CERES), FLASHFlux (Fast Longwave and Shortwave Radiative Fluxes from CERES and MODIS), and the Global Modeling and Assimilation Office (GMAO)17. Table 2 shows the source satellites and the corresponding temporal coverage used in the development of NASA-POWER GSR products.Table 2 Satellites providing the NASA-POWER GSR datasets20.Full size tableThe monthly average NASA-POWER all-sky shortwave surface radiation reanalysis products are statistically validated, showing reasonable biases of − 6.6–13%, against a global network of surface radiation measurement metadata in an integrated database from the Baseline Surface Radiation Network (BSRN) of the World Radiation Monitoring Center (WRMC)20,22. The datasets are widely used in renewable energy application16,22, agricultural modelling of crop yields28, crop simulation exercises29, and plant disease modelling30.Furthermore, in order to assess the suitability of the NASA-POWER surface solar radiation products for the study area, a synthetic sunshine duration based Global solar radiation (GSR) is developed from the Angstrom-Prescott sunshine duration model by Eq. 3 for comparisons27.$$ {text{GSR}} = left[ {{text{a}} + {text{b}}frac{{text{n}}}{{text{N}}}} right]{text{H}}_{{text{o}}} $$
(3)
were Ho (kWhm−2 day−1) is the daily extraterrestrial solar radiation on an horizontal surface, n is the daily sunshine duration measurements obtained from the Ghana Meteorological Agency (GMet), and N is the maximum possible daily sunshine duration or the day length in hours determined by Eq. 1. Generalized regression constants a = 0.25 and b = 0.5 for the study area were determined by Asilevi27 from experimental radiometric data based on correlation regression analysis between atmospheric clarity index (GSR/Ho) and atmospheric cloudlessness index (n/N), for estimating solar radiation over the study area, and compared with other satellite data retrieved from the National Renewable Energy Laboratory (NREL) and the German Aerospace Centre (DLR)27. Ho was calculated from astronomical parameters by Eq. 4:$$ {text{H}}_{0} = frac{{24{ } cdot { }60}}{pi } cdot {text{G}}_{{{text{sc}}}} cdot {text{d}}_{{text{r}}} left[ {omega_{{text{s}}} sin varphi sin delta + cos varphi cos delta sin omega_{{text{s}}} } right] $$
(4)
where Gsc is the Solar constant in MJm−2 min−1, dr is the relative Earth–Sun distance in meters (m), (omega_{s}) is the sunset hour angle (angular distance between the meridian of the observer and the meridian whose plane contains the sun), (delta) is the angle of declination in degrees (°) and (varphi) is the local latitude. A detailed presentation of the calculation was published in a previous work27.Statistical assessment analysisFor the purpose of assessing the NASA-POWER derived monthly mean GSR (GSRn) datasets in comparison with the estimated Global Solar Radiation (GSRe) datasets used in this paper, the following deviation and correlation methods in Eqs. 5–11, each showing a complimentary result were used: Standard deviation (({upsigma })), residual error (RE), Root mean square error (RMSE), Mean bias error (MBE), Mean percentage error (MPE), Pearson’s correlation coefficient (r), and Willmott index of agreement (d) for n observations31,32,33,34,35. GSRe, GSRn, and RE represent the estimated GSR, NASA-POWER GSR, and the residual error between GSRe and GSRn respectively. A positive RE indicates that sunshine-based estimated GSR is larger than the NASA-POWER reanalysis dataset, while a negative RE indicates that sunshine-based estimated GSR is smaller than the NASA-POWER reanalysis dataset. The arithmetic mean of any dataset is µ.The standard deviation (({upsigma })) was used to check the upper and lower limits of distribution around the mean deviations between GSRe and GSRn in order to ascertain violations between both datasets33. The RMSE is a standard statistical metric to quantify error margins in meteorology and climate research studies, and by definition is always positive, representing zero in the ideal case, plus a smaller value signifying a good marginal deviation31. The MBE is a good indicator for under-or overestimation in observations, with MBE values closest to zero being desirable. The MPE further indicates the percentage deviation between the GSRe and GSRn individual datasets35.$$ {upsigma } = sqrt {frac{1}{{{text{n}} – 1}}mathop sum limits_{{{text{i}} = 1}}^{{text{n}}} left( {{text{GSR}} – {upmu }} right)^{2} } $$
(5)
$$ {text{RE}} = {text{GSR}}_{{text{e}}} – {text{GSR}}_{{text{n}}} $$
(6)
$$ {text{RMSE}} = sqrt {frac{1}{{text{n}}}mathop sum limits_{{{text{i}} = 1}}^{{text{n}}} left( {{text{RE}}} right)^{2} } $$
(7)
$$ {text{MBE}} = frac{1}{{text{n}}}mathop sum limits_{{{text{i}} = 1}}^{{text{n}}} left( {{text{RE}}} right) $$
(8)
$$ {text{MPE}} = frac{1}{{text{n}}}mathop sum limits_{{{text{i}} = 1}}^{{text{n}}} left( {frac{{{text{RE}}}}{{{text{GSR}}_{{text{e}}} }} times 100{text{% }}} right) $$
(9)
$$ {text{r}} = frac{{mathop sum nolimits_{{{text{i}} = 1}}^{{text{n}}} left( {{text{GSR}}_{{text{e}}} – {upsigma }_{{text{e}}} } right)left( {{text{GSR}}_{{text{n}}} – {upsigma }_{{text{n}}} } right)}}{{left( {{text{n}} – 1} right){upsigma }_{{text{e}}} {upsigma }_{{text{n}}} }} $$
(10)
$$ {text{d}} = 1 – left[ {frac{{mathop sum nolimits_{{{text{i}} = 1}}^{{text{n}}} left( {{text{GSR}}_{{text{e}}} – {text{GSR}}_{{text{n}}} } right)^{2} }}{{mathop sum nolimits_{{{text{i}} = 1}}^{{text{n}}} left( {left| {{text{GSR}}_{{text{e}}} – {text{GSR}}_{{{text{nave}}}} left| + right|{text{GSR}}_{{text{n}}} – {text{GSR}}_{{{text{nave}}}} } right|} right)^{2} }}} right] $$
(11)
Further, as with other statistical studies in meteorology36, the Pearson’s correlation coefficient (r) was used to quantify the strength of correlation between GSRe and GSRn. Finally, the Willmott index of agreement (d) commonly used in meteorological literature computed from Eq. 7 is used to assess the degree of GSRe/GSRn agreement34. More

Soil sample collectionSoil samples were collected from three different crude oil reservoirs et al. Faisaliyyah, Al Sina’iyah, and Ghubairah located in Riyadh, Saudi Arabia. Briefly, 400 g of soil samples were collected at 0–10 cm depth, under aseptic conditions. Samples were sieved by 2.5 mm pore size sieves, homogenized, and stored at 4ºC until use.Sources of different hydrocarbonsDifferent samples of crude oil, kerosene, diesel, and used oil were collected in sterile flasks from the tankers of Saudi Aramco Company (Dammam, Saudi Arabia). Additionally, another flask was prepared by mixing 1% of each oil in MSM liquid media to make up the mixed oil. The oil samples were sterilized by Millex® Syringe Filters (Merck Millipore co., Burlington, MA, United States) and stored at 4 °C for further usage.Isolation and identification of fungal speciesThe fungal species in the soil contaminated by crude oil were identified using the dilution method. Briefly, 10% of each soil sample was dissolved in distilled water and vortexed thoroughly. Then, 0.2 ml of each sample was cultured on a sterile PDA plate incubated at 28 °C for three days until the growth of different fungal colonies. Carefully, each colony was isolated, re-cultured on new PDA McCartney bottles of PDA slant, and incubated at 28 °C for three days. The fungi were identified microscopically using standard taxonomic keys based on typical mycelia growth and morphological characteristics provided in the mycological keys54. Besides, the taxonomy of the isolated yeast strains was confirmed by the API 20 C AUX kit (Biomerieux Corp., Marcy-l’Étoile, France) (data not shown). The morphology of pure cultures was tested and identified under a light microscope as described before55.The incidence of each strain was calculated as follows:$$ Incidence ;(% ) = frac{{{text{Number }};{text{of }};{text{samples }};{text{showed }};{text{microbial }};{text{growth}}}}{{{text{Total }};{text{samples}}}} times 100 $$Hydrocarbon tolerance testThe growth rate of isolated strains was tested in a liquid medium of MSM mixed with 1% of either crude oil, used oil, diesel, kerosene, or mixed oil. Furthermore, a control sample of MSM liquid medium without any of the oils tested and all culture media were autoclaved at 121 °C for 30 min. After cooling, 1 ml of each isolate was inoculated with one of the above mixtures and incubated at 25 °C on an orbital shaker. The growth rate was measured every three days for a month for each treatment versus the control. All experiments were performed in triplicates.Scanning electron microscopy (SEM)The morphology of different strains of the isolated fungi was tested by SEM, as previously described56, with some modifications. Briefly, 1 ml of each growing strain, in the liquid media, was centrifuged at the maximum speed (14,000 rpm) for 1 min, followed by fixation with 2.5% glutaraldehyde, and overnight incubation at 5 °C. Later, the sample was pelleted, washed with distilled water, then dehydrated with different ascending concentrations of ethanol (30, 50, 70, 90, 100 (v/v)) for 15 min at room temperature. Finally, samples were examined in the Prince Naif Research Centre (King Saud University, Riyadh, Saudi Arabia) by the JEOL JEM-2100 microscope (JEOL, Peabody, MA, United States), according to the manufacturer instructions.Crude oil degradation assayA modified version of the DCPIP assay57 was employed to assess the oil-degrading ability of the fungal isolates. For each strain, 100 ml of the autoclaved MSM was mixed with 1% (V/V) of one of the hydrocarbons (crude oil, used oil, diesel, kerosene, or mixed oil), 0.1% (v/v) of Tween 80, and 0.6 mg/mL of the redox indicator (DCPIP). Then, 1–2 ml of different fungi growing in liquid media (24–48 h) add to the Crude Oil Degradation media, prepared previously, and incubated for two weeks in a shaking incubator at 25 °C. All flasks were covered and protected from light, aeration, or temperature exchanges to reduce the effects of oil weathering (evaporation, photooxidation). The surfactant Tween 80 was used for bio-stimulation and acceleration of the biosurfactant production by increasing metabolism58. A non-inoculated Crude Oil Degradation media was used as the negative control. Afterward, the colorimetric analysis for the change in DCPIP color was estimated, spectrophotometrically, at 420 nm. All experiments were performed in triplicates.Preparation of cell-free supernatant (CFS)To prepare the Cell-Free Supernatant (CFS), all isolates were grown in MSM broth medium with 1% of either crude oil, used oil, diesel, kerosene, or mixed oil for 30 days in a shaking incubator at 25 °C. After incubation, the cells were removed by centrifugation at 10,000 rpm for 30 min at 4 °C. The supernatant (CFS) was collected and filter-sterilized with a 0.45 μm pore size sterile membrane. CFS was screened for the production of different biosurfactants. All the experiments were carried out in triplicates, and the average values were calculated.Drop-Collapse assayThe Drop-Collapse assay was performed as previously described9, with some modifications. 100 µl of crude oil was applied on glass slides, then 10 µl of each CFS was added to the center of the slide surface and incubated for a minute at room temperature. The slides were imaged by a light microscope using the 10X objective lenses. The spreading on the soil surface was scored by either « + » to indicate the level of positive spreading, biosurfactant production, or «—» for negative spreading. Biosurfactant production was considered positive at the drop diameter ≥ 0.5 mm, compared to the negative control (treated with distilled water).Oil spreading assayAn amount of 20 ml of water was added to the Petri plate (size of 100 mm) and mixed with 20 µl of crude oil or mixed oil, which created a thin layer on the water surface. Then, 10 µl of CFS was delivered onto the surface of the oil, and the clear zone surrounding the CFS drop was observed. The results were compared to the negative control (without CFS) and positive control of 1% SDS41. We have measured the clear zones diameter from images and calculate the actual values in regards to the diameter of the Petri dish (10 cm). The assay was performed in triplicates.Emulsification activity assayThe emulsification activity of each isolate was assessed by mixing equal volumes of MSM broth medium of each isolate with different oils in separate tubes. The samples were homogenized by vortex at high speed for two minutes at room temperature (25 °C) and allowed to settle for 24 h. The tests were performed in duplicate. Then, the emulsification index was calculated as follows59:$$ Emulsification; activity; left( % right) = frac{{{text{Height }};{text{of }};{text{emulsion }};{text{layer}}}}{{{text{Total }};{text{height}}}} times 100 $$Recovery of biosurfactantsThe recovery of biosurfactants from CFS was tested through different assays:Acid precipitation assay3 ml of each CFS was adjusted by 6 N HCl to pH 2 and incubated for 24 h at 4 °C. Later, equal volumes of chloroform/methanol mixture (2:1 v/v) were added to each tube, vortexed, and incubated overnight at room temperature. Afterward, the samples were centrifuged for 30 min at 10,000 rpm (4 °C), the precipitate (Light brown colored paste) was air-dried in a fume hood, and weighed53.Solvent extraction assayThe CFS containing biosurfactant was treated with a mixture of extraction solvents (equal volumes of methanol, chloroform, and acetone). Then, the new mixture was incubated in a shaking incubator at 200 rpm, 30 °C for 5 h. The precipitate was separated into two layers, in which the lower layer (White) was isolated, dried, weighed, and stored60.Ammonium sulfate precipitation assayThe CFS containing biosurfactant was precipitated with 40% (w/v) ammonium sulfate and incubated overnight at 4 °C. The samples were centrifuged at 10,000 rpm for 30 min (4 °C). The precipitate was collected and extracted with an amount of acetone equal to the volume of the supernatant. After centrifugation, the precipitate (Creamy-white) was isolated, air-dried in a fume hood, and weighed53.Zinc sulfate precipitation methodSimilarly, 40% (w/v) zinc sulfate was mixed with the CFS containing biosurfactant. Then, the mixture was incubated at 4 °C, overnight. The precipitate (Light Brown) was collected by centrifugation at 10,000 rpm for 30 min (4 °C), air-dried in a fume hood, and weighed53.Statistical analysisAll experiments were performed in triplicate, and the results were expressed as the mean values ± standard deviation (SD). One-way ANOVA and Dunnett’s tests were used to estimate the significance levels at P  More

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