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    Strength-mass scaling law governs mass distribution inside honey bee swarms

    Our experimental data reveals a scaling law between the mass of a layer along the vertical coordinate, M(z), and the weight that it supports, W(z), namely: (W(z) sim M(z)^a) with (a approx 1.5). To better understand the physical mechanism that yields this scaling law, we derive the force balance equation of a layer of the swarm and solve for W(z). We then equate the analytical expression for W(z) with the experimentally determined scaling law, (W(z) sim M(z)^a), to connect the swarm mass distribution to the exponent a and formulate the expressions for M(z) and W(z) in terms of a. We then consider a dimensional analysis of the strength of each layer of the swarm, S, or the maximum weight that it can support before the grip of the bees on one another breaks. As will be described in detail below, we find that (S sim M^{1.5}), which is close to the experimentally determined (a = 1.53). Deviation from this value increases the fraction of maximum strength exerted by different parts of the swarm.Force balance model of the weight distribution in the swarmWe assume that the swarm is at quasi-equilibrium (the shape does not change although individual bees may move), that all of the bees in each layer contribute equally to supporting the weight of the bees underneath that layer, that the layer thickness is very small, and that the swarm is radially symmetrical about the z-axis. We use a cylindrical coordinate system with a vertical coordinate z, as shown in Fig. 1e, and we consider layers of the swarm along the z-axis of thickness dz. Variables labeled with a tilde, as in (tilde{W}(z)), represent analytically derived expressions; variables without a tilde, as in W(z), represent values determined with power law fits to experimental data.We begin our analysis by applying the force balance principle to each layer of a swarm. As shown by the free body diagram in Fig. 1f, the force with which each layer of bees has to grasp the layer above it is equal to the weight of that layer and all of the layers underneath it: (tilde{F} = tilde{W}(z)). We express (tilde{W}(z)) using the force balance equation (a continuous version of the discrete definition in Eq. (5).):$$begin{aligned} tilde{W}(z) = g int _z^L tilde{M}(z) dz, end{aligned}$$
    (8)
    where the mass of bees per layer is (tilde{M}(z)), the swarm length is L, and g is the gravitational constant. Inspired by our experimental observation that the mass of the layers near the base is highest and the mass of the layers at the tip of the swarm is lowest in Fig. 3a, we model (tilde{M}(z)) as a monotonically decreasing function of z. To keep the units consistent, we normalize the z coordiante by the length of the swarm:$$begin{aligned} tilde{M}(z) = c left( 1-frac{z}{L}right) ^{tilde{b}}, end{aligned}$$
    (9)
    where the c factor in this expression ensures that the units of the mass per layer are mass/length, and (tilde{b}) is an unknown exponent. Choosing this function form allows us to easily integrate the expression for (tilde{W}(z)) when we substitute (tilde{M}(z)) into it, set this force balance derivation for (tilde{W}(z)) equal to the experimentally determined expression (W(z) = C M(z)^a), and compare the exponents a and (tilde{b}).To solve the expression for (tilde{W}(z)), we substitute the expression for (tilde{M}(z)), Eq. (9), into Eq. (8) and integrate. We then express (tilde{b}) in terms of the experimentally determined a by equating this expression for (tilde{W}(z)) to the scaling law we observe in our experiments, Eq. (7), (W(z) = C tilde{M}(z)^a). The exponent in the expression for (tilde{M(z)}), Eq. (9), is$$begin{aligned} tilde{b} = frac{1}{a-1}. end{aligned}$$
    (10)
    The weight supported by each layer is then:$$begin{aligned} tilde{W}(z) = cLg left( 1 – frac{1}{a}right) left( 1-frac{z}{L}right) ^{frac{a}{a-1}}. end{aligned}$$
    (11)
    Next, we test how well our force balance model predicts the data by comparing the predicted value of (tilde{b}) using the force balance to the value of b calculated using experimental fits. We first separate the expression for the layer mass, Eq. (9) into the product of the layer area, (tilde{A}(z)) and the layer density, (tilde{rho }(z)):$$begin{aligned} tilde{M}(z) sim tilde{A}(z) tilde{rho }(z). end{aligned}$$
    (12)
    To simplify our analysis, we model (tilde{A}(z)) and (tilde{rho }(z)) with a similar monotonically decreasing function to that in Eq. (9):$$begin{aligned} tilde{A}(z) = c_1 left( 1-frac{z}{L}right) ^{tilde{b}_1}, end{aligned}$$
    (13)
    and$$begin{aligned} tilde{rho }(z) =c_2 left( 1-frac{z}{L}right) ^{tilde{b}_2} end{aligned}$$
    (14)
    we can then separately measure the effect of the changes in area and density on the exponent in the mass per layer expression in Eq. (9), (tilde{b} = tilde{b}_1 + tilde{b}_2).We first calculate (tilde{b}) using the expression derived from the force balance, Eq. (10), and our experimental result for a, which yields (tilde{b} = 2 pm 0.47). Second, we calculate b by separately calculating power law fits to the data for A(z) in Fig. 2e according to Eq. (13) and (rho (z)) in Fig. 2d according to Eq. (14), which yields (b_1 = 1.38 pm 0.2) and (b_2 = 0.51 pm 0.09). Thus, (b = b_1 + b_2 = 1.89 pm 0.25). See Supplementary Fig. S5(a–c) for log-log plots of M(z), A(z) and (rho (z)), and Supplementary Fig. S5(d–f) for plots of the resulting b, (b_1), and (b_2).We calculate the deviation of (tilde{b}) from b, (frac{tilde{b} – b}{tilde{b}} = 0.03 pm 0.11), and plot the deviation of b from (tilde{b}) in Supplementary Fig. S5(g) as a comparison for the individual CT scans. The values of b and (tilde{b}) being on the same order of magnitude validates the model and allows us to compare (tilde{W}(z)) to a maximum strength of each layer, which we find with dimensional analysis in the following section.Strength of a swarm layer and individual beesThe strength of the layer, (tilde{S}(z)), or the maximum weight that it could support, can be greater than or equal to (tilde{W}(z)): (tilde{S}(z) ge tilde{W}(z)). If the weight of the bees underneath a layer were to exceed its strength (tilde{S}(z)), the layer would not be able to support the weight of those bees, and the swarm would break apart. We perform a dimensional analysis on the strength of each layer to find the relationship between the mass of a layer and its maximum strength, (tilde{S}(z) sim tilde{M}(z)^{alpha }). Force is proportional to mass, which is proprtional to volume, or a length cubed, so a layer’s strength scales with length cubed, (tilde{S}(z) propto L^3). The mass of each layer, with units of mass/length, is proportional to an area, or a length squared, so (tilde{M}(z)) scales with length squared, (tilde{M}(z) propto L^2). Thus, (alpha) must be 1.5 for (tilde{S}(z) sim tilde{M}(z)^{alpha }) to be dimensionally correct. This is similar to the relationship between weightifting capacity and body weight in Ref.16.Estimating (tilde{W}(z)/tilde{S}(z)) gives a measure of how much of its maximum strength each layer uses to hold up the rest of the swarm:$$begin{aligned} frac{tilde{W}(z)}{tilde{S}(z)} sim left( 1-frac{1}{a}right) left( 1-frac{z}{L}right) ^frac{2a-3}{2a-2} end{aligned}$$
    (15)
    The average number of bees that a bee in a swarm layer supports, (tilde{F}_{bee}(z)), is equal to the mass of bees supported by a layer divided by the sum of the mass of bees in a layer of bees that has the thickness of the length of a bee, (l approx 1.5), as a continuous version of the discrete equation in Eq. (6):$$begin{aligned} tilde{F}_{bee}(z) =frac{int _z^L tilde{M}(z) dz}{int _z^{z+l} tilde{M}(z) dz}. end{aligned}$$
    (16)
    After integrating, we get an expression for (tilde{F}_{bee} (z)):$$begin{aligned} tilde{F}_{bee}(z)= frac{left( 1-frac{z}{L}right) ^{frac{a}{a-1}}}{left( 1-frac{z}{L}right) ^{frac{a}{a-1}} – left( 1-frac{z + l}{L}right) ^{frac{a}{a-1}}}. end{aligned}$$
    (17)
    We use the expression for (frac{tilde{W}(z)}{tilde{S}(z)}), Eq. (15), and (tilde{F}_{bee}(z)), Eq. (17), in the next section to evaluate how the force distribution in the swarm would change for swarms with different values of a.Effect of a on the mass of each layer, the fraction of its maximum stregnth it uses, and the average force per beeWe now consider the effect of varying a on the mass and force distribution inside the swarm. To visualize the effect of a on the distribution of bees, we plot the mass per layer of a 1000-g, 12.5 cm long swarm, (tilde{M}(z)) vs. z/L, with (a = 1.5, 1.01, 1000), and (-0.2) in Fig. 3c and the corresponding average force per bee, (F_{bee}(z)) vs. z/L in Fig. 3d. These values of a are example values for the four possible cases of mass distribution in the swarm. We then evaluate how these values of a affect the fraction of maximum strength each layer uses to support the layers underneath it using Eq. (15).If (a approx alpha), as we found in our experiments, layers with higher mass near the attachment surface support the less massive layers under them, as in the solid black line in Fig. 3c. Correspondingly, Fig. 3d shows (tilde{F}_{bee}(z=0) approx 3) at the top of the swarm, and decreases towards the tip. The strength of each layer and the weight it supports are proportional to one another, (tilde{W}(z)/tilde{S}(z) sim 1/3), meaning that the fraction of maximum strength used by a layer is the same for all z. If (1< a < alpha), the swarm approaches one massive layer of bees, as in the dashed purple line in Fig. 3c. The dimensional analysis results in a very small fraction of the total strength used by this layer, (tilde{W}(z)/tilde{S}(z) rightarrow 0 (1-frac{z}{L})^{-infty }). The force supported by each bee in Fig. 3d shows (tilde{F}_{bee}(z) = 1) for the entire swarm, meaning that each bee only supports its own weight. This configuration would either require packing a large number of bees into one very dense or one very wide layer. A swarm with one very dense layer at the top would compress all of the bees; a swarm with one very wide layer would require a large surface area, which would put the swarm in danger from predators and changes in weather. Thus, despite a potentially lower fraction of strength used by the largest layer of bees, this configuration would put the swarm in danger by requiring a large surface area.For values of (a > alpha), as (a rightarrow infty), all the layers of the swarm have the same mass, as in the dash-dot red line in Fig. 3c. The force per bee in Fig. 3d shows (tilde{F}_{bee}(z=0) approx 8) at the top of the swarm, 2.5 times that of the (a = alpha) configuration. In this configuration, the top layers use a higher percentage of their available strength than the lower layers, (tilde{W}(z)/tilde{S}(z) rightarrow (1-frac{z}{L})). Thus, for large swarms, the bees that support the swarm would be under more strain, and the swarm would be more likely to break under external perturbation.Finally, (a < 0) ((0 le a le 1) results in negative values for (tilde{W}(z))) would suggest that the top layers of the swarm have a lower mass than the bottom layers, as in the dotted orange line in Fig. 3c. This is not a realistic range of values for a, but we include it here as a demonstration of a potential mass distribution with the largest layers being on the bottom of the swarm. This configuration would put even more strain on the layers of bees at the top of the swarm, as smaller layers near the attachment surface have a smaller maximum strength. As (a rightarrow 0) on the (a < 0) side, (tilde{W}(z)/tilde{S}(z) rightarrow infty (1-z/L)^{1.5}), and bees in the top layers use a much greater fraction of their strength than bees in the bottom layers. Accordingly, the mean force per bee in Fig. 3d exceeds the maximum bee grip strength of 35 bee weights, and the swarm could not support itself in this configuration.The swarm configuration with (a approx 1.5) uses the full strength of each layer and puts a lower strain on the bees than most other values of a, and avoids weight distributions that could expose a large number of bees to external danger. More

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    Interconnected marine habitats form a single continental-scale reef system in South America

    Roelfsema, C., Phinn, S., Jupiter, S., Comley, J. & Albert, S. Mapping coral reefs at reef to reef-system scales, 10s–1000s km2, using object-based image analysis. Int. J. Remote Sens. 34, 6367–6388 (2013).Article 

    Google Scholar 
    Soares, M. O., Tavares, T. C. L. & Carneiro, P. Mesophotic ecosystems: Distribution, impacts and conservation in the South Atlantic. Divers. Distrib. 25(2), 255–268 (2019).
    Google Scholar 
    Leão, Z. M. A. N. et al. Brazilian coral reefs in a period of global change: A synthesis. Braz. J. Oceanogr. 64, 97–116 (2016).Article 

    Google Scholar 
    Leão, Z. M. A. N., Kikuchi, R. K. P. & Oliveira, M. D. M. The coral reef province of Brazil. World Seas: An Environmental Evaluation Volume I: Europe, the Americas and West Africa vol. 1 (Elsevier Ltd., 2018).Collette, B. B. & Rützler, K. Reef fishes over sponge bottoms off the mouth of the Amazon River. in Proceedings of Third International Coral Reef Symposium (ed. Taylor, D. L.) vol. 1 305–310 (Rosenstiel School of Marine and Atmospheric Science, 1977).Cordeiro, R. T. S., Neves, B. M., Rosa-Filho, J. S. & Pérez, C. D. Mesophotic coral ecosystems occur offshore and north of the Amazon River. Bull. Mar. Sci. 91, 491–510 (2015).Article 

    Google Scholar 
    Moura, R. L. et al. An extensive reef system at the Amazon River mouth. Sci. Adv. 2, e1501252 (2016).ADS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Francini-Filho, R. B. et al. Perspectives on the Great Amazon Reef: Extension, biodiversity, and threats. Front Mar Sci 5, 1–5 (2018).ADS 
    Article 

    Google Scholar 
    de Mahiques, M. M. et al. Insights on the evolution of the living Great Amazon Reef System, equatorial West Atlantic. Sci. Rep. 9, 1–8 (2019).Article 

    Google Scholar 
    Vale, N. F. et al. Distribution, morphology and composition of mesophotic ‘reefs’ on the Amazon Continental Margin. Mar. Geol. 447, 106779 (2022).ADS 
    Article 

    Google Scholar 
    Moura, R. L. et al. Tropical rhodolith beds are a major and belittled reef fish habitat. Sci. Rep. 11, 1–10 (2021).Article 

    Google Scholar 
    Rocha, L. A. Patterns of distribution and processes of speciation in Brazilian reef fishes. J. Biogeogr. 30, 1161–1171 (2003).Article 

    Google Scholar 
    Floeter, S. R. et al. Atlantic reef fish biogeography and evolution. J. Biogeogr. 31, 22–47 (2008).
    Google Scholar 
    Vale, N. F. et al. Structure and composition of rhodoliths from the Amazon River mouth, Brazil. J. S. Am. Earth Sci. 84, 149–159 (2018).Article 

    Google Scholar 
    IMaRS/USF, IRD, UNEP/WCMC, The WorldFish Center & WRI. Global Coral Reefs composite dataset compiled from multiple sources for use in the Reefs at Risk Revisited project incorporating products from the Millennium Coral Reef Mapping Project. Preprint at (2011).Soares, M. O. et al. Challenges and perspectives for the Brazilian semi-arid coast under global environmental changes. Perspect. Ecol. Conserv. 19, 267–278 (2021).
    Google Scholar 
    Castro, C. B. & Pires, D. O. Brazilian coral reefs: What we already know and what is still missing. Bull. Mar. Sci. 69, 357–371 (2001).
    Google Scholar 
    Leão, Z., Kikuchi, R. & Testa, V. Corals and coral reefs of Brazil. in Latin American Coral Reefs (ed. Cortés, J.) 9–52 (Elsevier Science Inc., 2003). https://doi.org/10.1016/B978-044451388-5/50003-5.Laborel-Deguen, F., Castro, C. B., Nunes, F. D. & Pires, D. O. Recifes brasileiros: o legado de Laborel. (Museu Nacional, 2019).Carneiro, P. et al. Marine hardbottom environments in the beaches of Ceará state, equatorial coast of Brazil. Arquivos de Ciências do Mar 54, 120–153 (2021).Carneiro, P. B. M. et al. Structure, growth and CaCO3 production in a shallow rhodolith bed from a highly energetic siliciclastic-carbonate coast in the equatorial SW Atlantic Ocean. Mar. Environ. Res. 166, 105280 (2021).CAS 
    PubMed 
    Article 

    Google Scholar 
    Testa, V., Bosence, D. W. J. & Universita, C. Physical and biological controls on the formation of carbonate and siliciclastic bedforms on the north-east Brazilian shelf. Sedimentology 46, 279–301 (1999).ADS 
    Article 

    Google Scholar 
    Carneiro, P. & Morais, J. O. de. Carbonate sediment production in the equatorial continental shelf of South America: Quantifying Halimeda incrassata (Chlorophyta) contributions. J. S. Am. Earth Sci. 72, 1–6 (2016).Milliman, J. D. Role of Calcareous Algae in Atlantic Continental Margin Sedimentation. in Fossil algae: recent results and developments (ed. Flügel, E.) 232–247 (Springer, 1977). https://doi.org/10.1007/978-3-642-66516-5_26.Knoppers, B., Ekau, W. & Figueiredo, A. G. The coast and shelf of east and northeast Brazil and material transport. Geo-Mar. Lett. 19, 171–178 (1999).ADS 
    Article 

    Google Scholar 
    Vital, H. The north and northeast Brazilian tropical shelves. in Continental shelves of the world: their evolution during the lasta glacio-eustatic cycle (eds. Chiocci, F. L. & Chivas, A. R.) 35–46 (Geological Society, 2014).Soares, M. de O. et al. Brazilian marine animal forests: A new world to discover in the southwestern Atlantic. Mar. Anim. For. 1–38. https://doi.org/10.1007/978-3-319-17001-5_51-1 (2016).Soares, M. O. et al. Impacts of a changing environment on marginal coral reefs in the Tropical Southwestern Atlantic Ocean. Coast. Manag. 210, 105692 (2021).
    Google Scholar 
    Santos, C. L. A., Vital, H., Amaro, V. E. & de Kikuchi, R. K. P. Mapping of the submerged reefs in the coast of the Rio Grande do Norte, near Brazil: Macau to Maracajau. Revista Brasileira de Geofisica 25, 27–36 (2007).Article 

    Google Scholar 
    Neto, I. C., Córdoba, V. C. & Vital, H. Morfologia, microfaciologia e diagênese de beachrocks costa-afora adjacentes à costa norte do Rio Grande do Norte, brasil. Geociências 32, 471–490 (2013).
    Google Scholar 
    Gomes, M. P. et al. The investigation of a mixed carbonate-siliciclastic shelf, NE Brazil: Side-scan sonar imagery, underwater photography, and surface-sediment data. Ital. J. Geosci. 134, 9–22 (2015).Article 

    Google Scholar 
    Soares, M. O., Rossi, S., Martins, F. A. S. & Carneiro, P. The forgotten reefs: Benthic assemblage coverage on a sandstone reef (Tropical South-western Atlantic). J. Mar. Biol. Assoc. U.K. 97(8), 1585–1592. https://doi.org/10.1017/S0025315416000965 (2017).Article 

    Google Scholar 
    Morais, J. O., Ximenes Neto, A. R., Pessoa, P. R. S. & Souza, L. P. Morphological and sedimentary patterns of a semi-arid shelf, Northeast Brazil. Geo-Ma. Lett. 40, 835–842. https://doi.org/10.1007/s00367-019-00587-x (2019).Cordeiro, R. T., Neves, B. M., Kitahara, M. v., Arantes, R. C. & Perez, C. D. First assessment on Southwestern Atlantic equatorial deep-sea coral communities. Deep-Sea Res. Part I Oceanogr. Res. Papers 163, 103344 (2020).Freitas, J. E. P. & Lotufo, T. M. C. Reef fish assemblage and zoogeographic affinities of a scarcely known region of the western equatorial Atlantic. J. Mar. Biol. Assoc. U.K. 95, 623–633 (2015).Article 

    Google Scholar 
    Soares, M. O., Davis, M., Paiva, C. C. de & Carneiro, P. Mesophotic ecosystems: Coral and fish assemblages in a tropical marginal reef (northeastern Brazil). Mar. Biodivers. 1–6 (2016). https://doi.org/10.1007/s12526-016-0615-x.Carneiro, P. B. M., Sátiro, I., COE, C. M. & Mendonça, K. V. Valoração ambiental do Parque Estadual Marinho da Pedra da Risca do Meio, Ceará, Brasil. Arquivo de Ciências do Mar 50, 25–41 (2017).Gomes, M. P., Vital, H. & Droxler, A. W. Terraces, reefs, and valleys along the Brazil northeast outer shelf: Deglacial sea-level archives?. Geo-Mar. Lett. 40, 699–711. https://doi.org/10.1007/s00367-020-00666-4 (2020).ADS 
    CAS 
    Article 

    Google Scholar 
    Cowen, R. K. & Sponaugle, S. Larval dispersal and marine population connectivity. Ann. Rev. Mar. Sci. 1, 443–466 (2009).PubMed 
    Article 

    Google Scholar 
    Raitsos, D. E. et al. Sensing coral reef connectivity pathways from space. Sci. Rep. 7, 1–10 (2017).CAS 
    Article 

    Google Scholar 
    Silveira, I. C. A., Miranda, L. B. & Brown, W. S. On the origins of the North Brazil Current. J. Geophys. Res. 99, 22501–22512 (1994).ADS 
    Article 

    Google Scholar 
    Dias, F. J. da S., Castro, B. M. & Lacerda, L. D. Tidal and low-frequency currents off the Jaguaribe River estuary (4° S, 37° 4′ W), northeastern Brazil. Ocean Dynamics 68, 967–985 (2018).Wellington, G. M. & Victor, B. C. Planktonic larval duration of one hundred species of Pacific and Atlantic damselfishes (Pomacentridae). Mar. Biol. 101, 557–567 (1989).Article 

    Google Scholar 
    Victor, B. C. Duration of the planktonic larval stage of one hundred species of Pacific and Atlantic wrasses (family Labridae). Mar. Biol. 90, 317–326 (1986).Article 

    Google Scholar 
    Endo, C. A. K., Gherardi, D. F. M., Pezzi, L. P. & Lima, L. N. Low connectivity compromises the conservation of reef fishes by marine protected areas in the tropical South Atlantic. Sci. Rep. 9, 1–11 (2019).Article 

    Google Scholar 
    Gomes, M. P. et al. Nature and condition of outer shelf habitats on the drowned Açu Reef, Northeast Brazil. in Seafloor Geomorphology as Benthic Habitat 571–585 (Elsevier, 2020). https://doi.org/10.1016/b978-0-12-814960-7.00034-8.Neto, I. C., Córdoba, V. C. & Vital, H. Petrografia de beachrock em zona costa afora adjacente ao litoral norte do Rio Grande do Norte Brasil. Quat. Environ. Geosci. 2, 12–18 (2010).
    Google Scholar 
    Gomes, M. P., Vital, H., Bezerra, F. H. R., de Castro, D. L. & Macedo, J. W. de P. The interplay between structural inheritance and morphology in the Equatorial Continental Shelf of Brazil. Mar. Geol. 355, 150–161 (2014).Rovira, D. P. T., Gomes, M. P. & Longo, G. O. Underwater valley at the continental shelf structures benthic and fish assemblages of biogenic reefs. Estuar. Coast. Shelf Sci. 224, 245–252 (2019).ADS 
    Article 

    Google Scholar 
    Tosetto, E. G., Bertrand, A., Neumann-Leitão, S. & Nogueira Júnior, M. The Amazon River plume, a barrier to animal dispersal in the Western Tropical Atlantic. Sci. Rep. 12, 537 (2022).ADS 
    Article 

    Google Scholar 
    Cord, I. et al. Brazilian marine biogeography: A multi-taxa approach for outlining sectorization. Mar. Biol. 169, 61 (2022).Article 

    Google Scholar 
    Moalic, Y. et al. Biogeography revisited with network theory: Retracing the history of hydrothermal vent communities. Syst. Biol. 61, 127 (2012).PubMed 
    Article 

    Google Scholar 
    López-Pérez, A. et al. The coral communities of the Islas Marias archipelago, Mexico: Structure and biogeographic relevance to the Eastern Pacific. Mar. Ecol. 37, 679–690 (2016).ADS 
    Article 

    Google Scholar 
    Cordeiro, C. A. M. M. et al. Conservation status of the southernmost reef of the Amazon Reef System: The Parcel de Manuel Luís. Coral Reefs 40, 165–185 (2021).Article 

    Google Scholar 
    Segal, B. & Castro, C. B. Coral community structure and sedimentation at different distances from the coast of the Abrolhos Bank Brazil. Braz. J. Oceanogr. 59, 119–129 (2011).Article 

    Google Scholar 
    Aued, A. W. et al. Large-scale patterns of benthic marine communities in the Brazilian Province. PLoS ONE 13, e0198452 (2018).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Soares, M. O. et al. Marginal Reefs in the Anthropocene: They Are Not Noah’s Ark. in Perspectives on the Marine Animal Forests of the World (eds. Rossi, S. & Bramanti, L.) 87–128 (Springer International Publishing, 2020). https://doi.org/10.1007/978-3-030-57054-5_4.Perry, C. T. & Larcombe, P. Marginal and non-reef-building coral environments. Coral Reefs 22, 427–432 (2003).Article 

    Google Scholar 
    Riegl, B. & Piller, W. E. Coral frameworks revisited – reefs and coral carpets in the northern Red Sea. Coral Reefs 18, 241–253 (1999).Article 

    Google Scholar 
    Rodríguez-Martínez, R. E., Jordán-Garza, A. G., Maldonado, M. A. & Blanchon, P. Controls on coral-ground development along the Northern Mesoamerican Reef Tract. PLoS ONE 6, e28461 (2011).ADS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Lotufo, T. M. et al. Sessile epifauna of Ceará´s shelf – high dominance of sponges. in 7th International Sponge Symposium – Biodiversity, Innovation, Sustainability 123–123 (Museu Nacional – UFRJ, 2006).Fonseca, V. P., Pennino, M. G., de Nóbrega, M. F., Oliveira, J. E. L. & de Figueiredo Mendes, L. Identifying fish diversity hot-spots in data-poor situations. Mar. Environ. Res. 129, 365–373 (2017).Olavo, G., Costa, P. A. S., Martins, A. S. & Ferreira, B. P. Shelf-edge reefs as priority areas for conservation of reef fish diversity in the tropical Atlantic. Aquat. Conserv. Mar. Freshwat. Ecosyst. 21, 199–209 (2011).Article 

    Google Scholar 
    Eduardo, L. N. et al. Identifying key habitat and spatial patterns of fish biodiversity in the tropical Brazilian continental shelf. Cont. Shelf Res. 166, 108–118 (2018).ADS 
    Article 

    Google Scholar 
    Carneiro, P. B. de M. et al. Structure, growth and CaCO3 production in a shallow rhodolith bed from a highly energetic siliciclastic-carbonate coast in the equatorial SW Atlantic Ocean. Mar. Environ. Res. 166, 105280 (2021).Costa, A. C. P., Garcia, T. M., Paiva, B. P., Ximenes Neto, A. R. & Soares, M. de O. Seagrass and rhodolith beds are important seascapes for the development of fish eggs and larvae in tropical coastal areas. Mar. Environ. Res. 161, 105064 (2020).Testa, V. & Bosence, D. W. J. Carbonate-siliciclastic sedimentation on a high-energy, ocean-facing, tropical ramp, NE Brazil. in Carbonate Ramps (eds. Wright, V. P. & Burchette, T. P.) 55–71 (The Geological Society, 1998).Ximenes Neto, A. R., de Morais, J. O. & Ciarlini, C. Modern and relict sedimentary systems of the semi-arid continental shelf in NE Brazil. J. S. Am. Earth Sci. 84, 56–68 (2018).CAS 
    Article 

    Google Scholar 
    Ximenes Neto, A. R., Morais, J. O. de, Paula, L. F. S. de & Pinheiro, L. de S. Transgressive deposits and morphological patterns in the equatorial Atlantic shallow shelf (Northeast Brazil). Region. Stud. Mar. Sci. 24, 212–224 (2018).Sponaugle, S., Lee, T., Kourafalou, V. & Pinkard, D. Florida Current frontal eddies and the settlement of coral reef fishes. Limnol. Oceanogr. 50, 1033–1048 (2005).ADS 
    Article 

    Google Scholar 
    Cruz, R. et al. Large-scale oceanic circulation and larval recruitment of the spiny lobster Panulirus argus (Latreille, 1804). Crustaceana 88, 298–323 (2015).Article 

    Google Scholar 
    Luiz, O. J. et al. Ecological traits influencing range expansion across large oceanic dispersal barriers: Insights from tropical Atlantic reef fishes. Proc. R. Soc. B Biol. Sci. 279, 1033–1040 (2012).Article 

    Google Scholar 
    Romero-Torres, M., Treml, E. A., Blanchon, P., Acosta, A. & Paz-García, D. A. The Eastern Tropical Pacific coral population connectivity and the role of the Eastern Pacific Barrier. Sci. Rep. 8, 1–13 (2018).CAS 
    Article 

    Google Scholar 
    Leal, C. v. et al. Integrative taxonomy of Amazon Reefs’ Arenosclera spp.: A new clade in the Haplosclerida (Demospongiae). Front. Mar. Sci. 4, 291 (2017).Peluso, L. et al. Contemporary and historical oceanographic processes explain genetic connectivity in a Southwestern Atlantic coral. Sci. Rep. 8, 1–12 (2018).CAS 
    Article 

    Google Scholar 
    Targino, A. K. G. & Gomes, P. B. Distribution of sea anemones in the Southwest Atlantic: Biogeographical patterns and environmental drivers. Mar. Biodivers. 50, 1–17 (2020).Article 

    Google Scholar 
    Barroso, C. X., Lotufo, T. M. da C. & Matthews-Cascon, H. Biogeography of Brazilian prosobranch gastropods and their Atlantic relationships. J. Biogeogr. 43, 2477–2488 (2016).Pinheiro, H. T. et al. South-western Atlantic reef fishes: Zoogeographical patterns and ecological drivers reveal a secondary biodiversity centre in the Atlantic Ocean. Divers. Distrib. 24, 951–965 (2018).Article 

    Google Scholar 
    Medeiros, A. P. M. et al. Deep reefs are not refugium for shallow-water fish communities in the southwestern Atlantic. Ecol. Evol. 11, 4413–4427 (2021).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Sammon, J. W. A nonlinear mapping for data structure analysis. IEEE Trans. Comput. C–18, 401–409 (1969).Prim, R. C. Shortest connection networks and some generalizations. Bell Syst. Tech. J. 36, 1389–1401 (1957).ADS 
    Article 

    Google Scholar  More

  • in

    Ecological sensitivity and vulnerability of fishing fleet landings to climate change across regions

    Sumaila, U. R. & Tai, T. C. End overfishing and increase the resilience of the ocean to climate change. Front. Mar. Sci. 7, 1–8 (2020).Article 

    Google Scholar 
    Sumaila, U. R. et al. Benefits of the paris agreement to ocean life, economies, and people. Sci. Adv. 5, 1–10 (2019).Article 

    Google Scholar 
    Beaudreau, A. H. et al. Thirty years of change and the future of Alaskan fisheries: Shifts in fishing participation and diversification in response to environmental, regulatory and economic pressures. Fish Fish. 20, 601–619 (2019).
    Google Scholar 
    Finkbeiner, E. M. The role of diversification in dynamic small-scale fisheries: Lessons from Baja California Sur. Mexico. Glob. Environ. Chang. 32, 139–152 (2015).Article 

    Google Scholar 
    Johnson, J. E. et al. Assessing and reducing vulnerability to climate change: Moving from theory to practical decision-support. Mar. Policy 74, 220–229 (2016).Article 

    Google Scholar 
    IPCC. Climate Change 2007: Synthesis Report. Contribution of working groups I, II and III to the fourth assessment report of the intergovernmental panel on climate change. (2007).Johnson, J. E. & Welch, D. J. Climate change implications for Torres Strait fisheries: Assessing vulnerability to inform adaptation. Clim. Change 135, 611–624 (2016).ADS 
    Article 

    Google Scholar 
    IPCC. Annex I: Glossary. in IPCC special report on the ocean and cryosphere in a changing climate e [H.-O. Pörtner, D.C. Roberts, V. Masson-Delmotte, P. Zhai, M. Tignor, E. Poloczanska, K. Mintenbeck, A. Alegría, M. Nicolai, A. Okem, J. Petzold, B. Rama, N.M. Weyer (eds.)] 677–702 (Cambridge University Press, 2019). https://doi.org/10.1017/9781009157964.010Cheung, W. W. L., Watson, R., Morato, T., Pitcher, T. J. & Pauly, D. Intrinsic vulnerability in the global fish catch. Mar. Ecol. Prog. Ser. 333, 1–12 (2007).ADS 
    Article 

    Google Scholar 
    Pauly, D., Christensen, V., Dalsgaard, J., Froese, R. & Torres, F. Fishing down marine food webs. Science 80(279), 860 (1998).ADS 
    Article 

    Google Scholar 
    Lam, V. W. Y., Cheung, W. W. L., Reygondeau, G. & Rashid Sumaila, U. Projected change in global fisheries revenues under climate change. Sci. Rep. 6(6), 13 (2016).
    Google Scholar 
    Heck, N. et al. Fisheries at risk: Vulnerability of fisheries to climate change (Nat. Conserv. Tech. Rep, 2020).
    Google Scholar 
    Allison, E. H. et al. Vulnerability of national economies to the impacts of climate change on fisheries. Fish Fish. 10, 173–196 (2009).Article 

    Google Scholar 
    DuFour, M. R. et al. Portfolio theory as a management tool to guide conservation and restoration of multi-stock fish populations. Ecosphere 6(12), 1 (2015).Article 

    Google Scholar 
    Kasperski, S. & Holland, D. S. Income diversification and risk for fishermen. Proc. Natl. Acad. Sci. U. S. A. 110, 2076–2081 (2013).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Bahri, T. et al. Adaptive management of fisheries in response to climate change. FAO Fisheries and Aquaculture Technical Paper 667, (FAO, 2021).Barker, M. J. & Schluessel, V. Managing global shark fisheries: Suggestions for prioritizing management strategies. Aquat. Conserv. Mar. Freshw. Ecosyst. 15, 325–347 (2005).Article 

    Google Scholar 
    Fletcher, W. J. F. & Fletcher, W. J. The application of qualitative risk assessment methodology to prioritize issues for fisheries management. ICES J. Mar. Sci. 62, 1576–1587 (2005).Article 

    Google Scholar 
    Cheung, W. W. L. The future of fishes and fisheries in the changing oceans. J. Fish Biol. 92, 790–803 (2018).CAS 
    PubMed 
    Article 

    Google Scholar 
    Cinner, J. E. et al. Evaluating social and ecological vulnerability of coral reef fisheries to climate change. PLoS ONE 8(9), e74321 (2013).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Colburn, L. L. et al. Indicators of climate change and social vulnerability in fishing dependent communities along the Eastern and Gulf Coasts of the United States. Mar. Policy 74, 323–333 (2016).Article 

    Google Scholar 
    Pinnegar, J. K. et al. Assessing vulnerability and adaptive capacity of the fisheries sector in Dominica: Long-term climate change and catastrophic hurricanes. ICES J. Mar. Sci. 76, 1353–1367 (2019).
    Google Scholar 
    Aragão, G. M. et al. The importance of regional differences in vulnerability to climate change for demersal fisheries. ICES J. Mar. Sci. 1, 1–13 (2021).
    Google Scholar 
    Payne, M. R., Kudahl, M., Engelhard, G. H., Peck, M. A. & Pinnegar, J. K. Climate risk to European fisheries and coastal communities. Proc. Natl. Acad. Sci. U. S. A. 118, e2018086118 (2021).CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Baptista, V., Silva, P. L., Relvas, P., Teodósio, M. A. & Leitão, F. Sea surface temperature variability along the Portuguese coast since 1950. Int. J. Climatol. 38, 1145–1160 (2018).Article 

    Google Scholar 
    Leitão, F. et al. (2019) A 60-year time series analyses of the upwelling along the Portuguese coast. Water 11(11), 1285 (2019).Article 

    Google Scholar 
    Leitão, F., Relvas, P., Cánovas, F., Baptista, V. & Teodósio, A. Northerly wind trends along the Portuguese marine coast since 1950. Theor. Appl. Climatol. 137(1), 19 (2018).
    Google Scholar 
    Bueno-Pardo, J. et al. Trends and drivers of marine fish landings in Portugal since its entrance in the European Union. ICES J. Mar. Sci. 77, 988–1001 (2020).Article 

    Google Scholar 
    Leitão, F., Maharaj, R. R., Vieira, V. M. N. C. S., Teodósio, A. & Cheung, W. W. L. The effect of regional sea surface temperature rise on fisheries along the Portuguese Iberian Atlantic coast. Aquat. Conserv. Mar. Freshw. Ecosyst. 28, 1351–1359 (2018).Article 

    Google Scholar 
    Leitão, F., Alms, V. & Erzini, K. A multi-model approach to evaluate the role of environmental variability and fishing pressure in sardine fisheries. J. Mar. Syst. 139, 128–138 (2014).Article 

    Google Scholar 
    Ullah, H., Leitão, F., Baptista, V. & Chícharo, L. An analysis of the impacts of climatic variability and hydrology on the coastal fisheries, Engraulis encrasicolus and Sepia officinalis, of Portugal. Ecohydrol. Hydrobiol. 12, 337–352 (2012).Article 

    Google Scholar 
    EUMOFA. The EU Fish Market – Highlights the EU in the world market supply consumption import-export landings in the EU aquaculture (2021) https://doi.org/10.2771/563899DGPM. Relatório de Monitorização da Estratégia Nacional para o Mar 2013–2020, Documento de Suporte às Políticas do Mar. (2020).Almeida, C., Karadzic, V. & Vaz, S. The seafood market in Portugal: Driving forces and consequences. Mar. Policy 61, 87–94 (2015).Article 

    Google Scholar 
    Pita, C. & Gaspar, M. (2020) Small-Scale Fisheries in Portugal: Current Situation, Challenges and Opportunities for the Future. In Small-Scale Fisheries in Europe: Status, Resilience and Governance. Springer, Cham 283–305https://doi.org/10.1007/978-3-030-37371-9_14Baeta, F., José Costa, M. & Cabral, H. Changes in the trophic level of Portuguese landings and fish market price variation in the last decades. Fish. Res. 97, 216–222 (2009).Article 

    Google Scholar 
    Leitão, F. Landing profiles of Portuguese fisheries: Assessing the state of stocks. Fish. Manag. Ecol. 22, 152–163 (2015).Article 

    Google Scholar 
    Quentin Grafton, R. Adaptation to climate change in marine capture fisheries. Mar. Policy 34, 606–615 (2010).Article 

    Google Scholar 
    Bueno-Pardo, J. et al. Climate change vulnerability assessment of the main marine commercial fish and invertebrates of Portugal. Sci. Rep. 11, 2958 (2021).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Szynaka, M. J., Erzini, K., Gonçalves, J. M. S. & Campos, A. Identifying métiers using landings profiles: An octopus-driven multi-gear coastal fleet. J. Mar. Sci. Eng. 9, 1022 (2021).Article 

    Google Scholar 
    Gamito, R., Teixeira, C. M., Costa, M. J. & Cabral, H. N. Climate-induced changes in fish landings of different fleet components of Portuguese fisheries. Reg. Environ. Chang. 13, 413–421 (2013).Article 

    Google Scholar 
    Leitão, F., Baptista, V., Zeller, D. & Erzini, K. Reconstructed catches and trends for mainland Portugal fisheries between 1938 and 2009: Implications for sustainability, domestic fish supply and imports. Fish. Res. 155, 33–50 (2014).Article 

    Google Scholar 
    Teixeira, C. M. et al. Trends in landings of fish species potentially affected by climate change in Portuguese fisheries. Reg. Environ. Chang. 14, 657–669 (2014).Article 

    Google Scholar 
    Wickham, H. ggplot2: Elegant graphics for data analysis (Springer-Verlag, 2016).MATH 
    Book 

    Google Scholar 
    R Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria 3–900051–07–0 (2020).Zuur, A. F., Fryer, R. J., Jolliffe, I. T., Dekker, R. & Beukema, J. J. Estimating common trends in multivariate time series using dynamic factor analysis. Environmetrics 14, 665–685 (2003).Article 

    Google Scholar 
    Zuur, A. F., Ieno, E. N. & Smith, G. M. (2007) Analysing Ecological Data. https://doi.org/10.1007/978-0-387-45972-1Anderson, M., Gorley, R. & Clarke, K. PERMANOVA for PRIMER: Guide to software and statistical methods. (PRIMER-E Ltd., 2008).Heppell, S. S., Heppell, S. a, Read, A. J. & Crowder, L. B. Effects of fishing on long-lived marine organisms. In Marine conservation biology: The science of maintaining the sea’s biodiversity (eds. Norse, E. & Crowder, L.) 211–231 (Island Press, 2005).Maynou, F. et al. Estimating trends of population decline in long-lived marine species in the Mediterranean sea based on fishers’ perceptions. PLoS ONE 6, e21818 (2011).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Rolland, V., Barbraud, C. & Weimerskirch, H. Combined effects of fisheries and climate on a migratory long-lived marine predator. J. Appl. Ecol. 45, 4–13 (2008).Article 

    Google Scholar 
    Alves, L. M. F., Correia, J. P. S., Lemos, M. F. L., Novais, S. C. & Cabral, H. Assessment of trends in the Portuguese elasmobranch commercial landings over three decades (1986–2017). Fish. Res. 230, 105648 (2020).Article 

    Google Scholar 
    Correia, J. P., Morgado, F., Erzini, K. & Soares, A. M. V. M. Elasmobranch landings for the Portuguese commercial fishery from 1986 to 2009. Arquipel. Life Mar. Sci. 33, 81–109 (2016).
    Google Scholar 
    Pauly, D. Anecdotes and the shifting baseline syndrome of fisheries. Trends Ecol. Evol. 10, 430 (1995).CAS 
    PubMed 
    Article 

    Google Scholar 
    Pinnegar, J. K. & Engelhard, G. H. The ‘shifting baseline’ phenomenon: A global perspective. Rev. Fish Biol. Fish. 18, 1–16 (2008).Article 

    Google Scholar 
    Moura, T. et al. Assessing spatio-temporal changes in marine communities along the Portuguese continental shelf and upper slope based on 25 years of bottom trawl surveys. Mar. Environ. Res. 160, 105044 (2020).ADS 
    CAS 
    PubMed 
    Article 

    Google Scholar 
    Martins, M. M., Skagen, D., Marques, V., Zwolinski, J. & Silva, A. Changes in the abundance and spatial distribution of the Atlantic chub mackerel (Scomber colias) in the pelagic ecosystem and fisheries off Portugal. Sci. Mar. 77, 551–563 (2013).Article 

    Google Scholar 
    Bordalo-Machado, P. & Figueiredo, I. The fishery for black scabbardfish (Aphanopus carbo Lowe, 1839) in the Portuguese continental slope. Rev. Fish Biol. Fish. 19, 49–67 (2009).Article 

    Google Scholar 
    Gordo, L. S. Black scabbardfish (Aphanopus carbo Lowe, 1839) in the southern Northeast Atlantic: Considerations on its fishery. Sci. Mar. 73, 11–16 (2009).Article 

    Google Scholar 
    Campos, A., Fonseca, P., Fonseca, T. & Parente, J. Definition of fleet components in the Portuguese bottom trawl fishery. Fish. Res. 83, 185–191 (2007).Article 

    Google Scholar 
    Bueno-Pardo, J. et al. Deep-sea crustacean trawling fisheries in Portugal: Quantification of effort and assessment of landings per unit effort using a Vessel Monitoring System (VMS). Sci. Rep. 7, 1–10 (2017).ADS 
    Article 

    Google Scholar 
    Gamito, R., Pita, C., Teixeira, C., Costa, M. J. & Cabral, H. N. Trends in landings and vulnerability to climate change in different fleet components in the Portuguese coast. Fish. Res. 181, 93–101 (2016).Article 

    Google Scholar 
    García-Seoane, E., Marques, V., Silva, A. & Angélico, M. M. Spatial and temporal variation in pelagic community of the western and southern Iberian Atlantic waters. Estuar. Coast. Shelf Sci. 221, 147–155 (2019).ADS 
    Article 

    Google Scholar 
    Vinagre, C., Duarte, F., Cabral, H. & Jose, M. Impact of climate warming upon the fish assemblages of the Portuguese coast under different scenarios. Reg. Environ. Change 11(4), 779. https://doi.org/10.1007/s10113-011-0215-z (2011).Article 

    Google Scholar 
    Goulart, P., Veiga, F. J. & Grilo, C. The evolution of fisheries in Portugal: A methodological reappraisal with insights from economics. Fish. Res. 199, 76–80 (2018).Article 

    Google Scholar 
    Pita, C., Pereira, J., Lourenço, S., Sonderblohm, C. & Pierce, G. J. (2015) The Traditional Small-Scale Octopus Fishery in Portugal: Framing Its Governability. 117–132. https://doi.org/10.1007/978-3-319-17034-3_7Pita, C. et al. Fisheries for common octopus in Europe: Socioeconomic importance and management. Fish. Res. 235, 105820 (2021).Article 

    Google Scholar 
    Moreno, A. et al. Essential habitats for pre-recruit Octopus vulgaris along the Portuguese coast. Fish. Res. 152, 74–85 (2014).ADS 
    Article 

    Google Scholar 
    Sbrana, M. et al. Spatiotemporal abundance pattern of deep-water rose shrimp, parapenaeus longirostris, and Norway lobster, nephrops norvegicus, in european mediterranean waters. Sci. Mar. 83, 71–80 (2019).Article 

    Google Scholar 
    Quattrocchi, F., Fiorentino, F., Lauria, V. & Garofalo, G. The increasing temperature as driving force for spatial distribution patterns of Parapenaeus longirostris (Lucas 1846) in the Strait of Sicily (Central Mediterranean Sea). J. Sea Res. 158, 101871 (2020).Article 

    Google Scholar 
    Colloca, F., Mastrantonio, G., Lasinio, G. J., Ligas, A. & Sartor, P. Parapenaeus longirostris (Lucas, 1846) an early warning indicator species of global warming in the central Mediterranean Sea. J. Mar. Syst. 138, 29–39 (2014).Article 

    Google Scholar 
    Woods, P. J. et al. (2021) A review of adaptation options in fisheries management to support resilience and transition under socio-ecological change. ICES J. Mar. Sci. fsab146Gonzalez-Mon, B. et al. Spatial diversification as a mechanism to adapt to environmental changes in small-scale fisheries. Environ. Sci. Policy 116, 246–257 (2021).Article 

    Google Scholar 
    Garza-Gil, M. D., Torralba-Cano, J. & Varela-Lafuente, M. M. Evaluating the economic effects of climate change on the European sardine fishery. Reg. Environ. Chang. 11, 87–95 (2011).Article 

    Google Scholar 
    Borges, M. F., Santos, A. M. P., Crato, N., Mendes, H. & Mota, B. Sardine regime shifts off Portugal: A time series analysis of catches and wind conditions. Sci. Mar. 67, 235–244 (2003).Article 

    Google Scholar 
    Garrido, S. et al. Temperature and food-mediated variability of European Atlantic sardine recruitment. Prog. Oceanogr. 159, 267–275 (2017).ADS 
    Article 

    Google Scholar 
    ICES. Report of the working group on southern horse mackerel, anchovy and sardine (WGHANSA). (2018).Szalaj, D. et al. Food-web dynamics in the Portuguese continental shelf ecosystem between 1986 and 2017: Unravelling drivers of sardine decline. Estuar. Coast. Shelf Sci. 251, 107259 (2021).Article 

    Google Scholar 
    Feijó, D. et al. Catch and yield trends of the Portuguese purse seine fishery (2006–2018). Front. Mar. Sci. https://doi.org/10.3389/conf.fmars.2019.08.00013 (2019).Article 

    Google Scholar 
    Schickele, A., Francour, P. & Raybaud, V. European cephalopods distribution under climate-change scenarios. Sci. Rep. 11, 3930 (2021).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Purcell, S. W., Crona, B. I., Lalavanua, W. & Eriksson, H. Distribution of economic returns in small-scale fisheries for international markets: A value-chain analysis. Mar. Policy 86, 9–16 (2017).Article 

    Google Scholar 
    Thiao, D., Leport, J., Ndiaye, B. & Mbaye, A. Need for adaptive solutions to food vulnerability induced by fish scarcity and unaffordability in Senegal. Aquat. Living Resour. 31, 25 (2018).Article 

    Google Scholar 
    Education, A. & Variability, H. Cardoso, C., Lourenço, H., Costa, S., Gonçalves, S. & Leonor Nunes, M. Survey Into the Seafood Consumption Preferences and Patterns in the Portuguese Population. J. Food Prod. Mark. 22, 421–435 (2016).Article 

    Google Scholar 
    Holsten, A. & Kropp, J. P. An integrated and transferable climate change vulnerability assessment for regional application. Nat. Hazards 64, 1977–1999 (2012).Article 

    Google Scholar 
    Umweltbundesamt guidelines for climate impact and vulnerability assessments recommendations of the interministerial working group on adaptation to climate change of the German federal government for our environment. More

  • in

    The effect of putrescine on space use and activity in sea lamprey (Petromyzon marinus)

    Hume, J. B. et al. Managing native and non-native sea lamprey (Petromyzon marinus) through anthropogenic change: A prospective assessment of key threats and uncertainties. J. Great Lakes Res. 47, S704–S722 (2021).Article 

    Google Scholar 
    Siefkes, M. J. Use of physiological knowledge to control the invasive sea lamprey (Petromyzon marinus) in the Laurentian Great Lakes. Conserv. Physiol. 5, 1–18 (2017).Article 

    Google Scholar 
    Hunn, J. B. & Youngs, W. D. Role of physical barriers in the control of Sea Lamprey (Petrorn yzon marinus). Can. J. Fish. Aquat. Sci. 37, 2118–2122 (1980).Article 

    Google Scholar 
    Christie, M. R., Sepúlveda, M. S. & Dunlop, E. S. Rapid resistance to pesticide control is predicted to evolve in an invasive fish. Sci. Rep. 9, 18157. https://doi.org/10.1038/s41598-019-54260-5 (2019).ADS 
    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Cline, T. J. et al. Climate impacts on landlocked sea lamprey: Implications for host-parasite interactions and invasive species management. Ecosphere 5(6), 68. https://doi.org/10.1890/ES14-00059.1 (2014).Article 

    Google Scholar 
    Lennox, R. J. et al. Potential changes to the biology and challenges to the management of invasive sea lamprey Petromyzon marinus in the Laurentian Great Lakes due to climate change. Glob. Change Biol. 26, 1118–1137. https://doi.org/10.1111/gcb.14957 (2020).ADS 
    Article 

    Google Scholar 
    Siefkes, M. J., Johnson, N. S. & Muir, A. M. A renewed philosophy about supplemental sea lamprey controls. J. Great Lakes Res. 47, S742–S752 (2021).Article 

    Google Scholar 
    Fissette, S. D. et al. Progress towards integrating an understanding of chemical ecology into sea lamprey control. J. Great Lakes Res. 47, S660–S672 (2021).CAS 
    Article 

    Google Scholar 
    Miehls, S. et al. The future of barriers and trapping methods in the sea lamprey (Petromyzon marinus) control program in the Laurentian Great Lakes. Rev. Fish Biol. Fish. 30, 1–24 (2020).Article 

    Google Scholar 
    Imre, I., Di Rocco, R. T., Belanger, C. F., Brown, G. E. & Johnson, N. S. The behavioural response of adult Petromyzon marinus to damage-released alarm and predator cues. J. Fish Biol. 84, 1490–1502 (2014).CAS 
    PubMed 
    Article 

    Google Scholar 
    Kats, L. B. & Dill, L. M. The scent of death: chemosensory assessment of predation risk by prey animals. Ecoscience 5, 361–394 (1998).Article 

    Google Scholar 
    Wisenden, B. D. Olfactory assessment of predation risk in the aquatic environment. Philos. Trans. R. Soc. B Biol. Sci. 355, 1205–1208 (2000).Wisenden, B. D., Chivers, D. P., Brown, G. E. & Smith, R. J. The role of experience in risk assessment: Avoidance of areas chemically labelled with fathead minnow alarm pheromone by conspecifics and heterospecifics. Ecoscience 2, 116–122 (1995).Article 

    Google Scholar 
    Bairos-Novak, K. R., Ferrari, M. C. O. & Chivers, D. P. A novel alarm signal in aquatic prey: Familiar minnows coordinate group defences against predators through chemical disturbance cues. J. Anim. Ecol. 88, 1281–1290 (2019).PubMed 
    Article 

    Google Scholar 
    Chivers, D. P. & Smith, R. J. F. Chemical alarm signalling in aquatic predator-prey systems: A review and prospectus. Ecoscience 5, 338–352 (1998).Article 

    Google Scholar 
    Ferrari, M. C. O., Wisenden, B. D. & Chivers, D. P. Chemical ecology of predator–prey interactions in aquatic ecosystems: A review and prospectus. Can. J. Zool. 88, 698–724 (2010).Article 

    Google Scholar 
    Lawrence, B. J. & Smith, R. J. F. Behavioral response of solitary fathead minnows, Pimephales promelas, to alarm substance. J. Chem. Ecol. 3, 209–219 (1989).Article 

    Google Scholar 
    Bals, J. D. & Wagner, C. M. Behavioral responses of sea lamprey (Petromyzon marinus) to a putative alarm cue derived from conspecific and heterospecific sources. Behaviour 149, 901–923 (2012).Article 

    Google Scholar 
    Hume, J. B. & Wagner, C. M. A death in the family: Sea lamprey (Petromyzon marinus) avoidance of confamilial alarm cues diminishes with phylogenetic distance. Ecol. Evol. 8, 3751–3762 (2018).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Wagner, C. M., Stroud, E. M. & Meckley, T. D. A deathly odor suggests a new sustainable tool for controlling a costly invasive species. Can. J. Fish. Aquat. Sci. 68, 1157–1160 (2011).Article 

    Google Scholar 
    Byford, G. J., Wagner, C. M., Hume, J. B. & Moser, M. L. Do native pacific lamprey and invasive sea lamprey share an alarm cue? Implications for use of a natural repellent to guide imperiled pacific lamprey into fishways. North Am. J. Fish. Manag. 36, 1090–1096 (2016).Article 

    Google Scholar 
    Wagner, C. M., Kierczynski, K. E., Hume, J. B. & Luhring, T. M. Exposure to a putative alarm cue reduces downstream drift in larval sea lamprey Petromyzon marinus in the laboratory. J. Fish Biol. 89, 1897–1904 (2016).CAS 
    PubMed 
    Article 

    Google Scholar 
    Di Rocco, R. T., Johnson, N. S., Brege, L., Imre, I. & Brown, G. E. Sea lamprey avoid areas scented with conspecific tissue extract in Michigan streams. Fish. Manag. Ecol. 23, 548–560 (2016).Article 

    Google Scholar 
    Hume, J. B., Luhring, T. M. & Wagner, C. M. Push, pull, or push–pull? An alarm cue better guides sea lamprey towards capture devices than a mating pheromone during the reproductive migration. Biol. Invasions 22, 2129–2142 (2020).Article 

    Google Scholar 
    Hume, J. B. et al. Application of a putative alarm cue hastens the arrival of invasive sea lamprey (Petromyzon marinus) at a trapping location. Can. J. Fish. Aquat. Sci. 72, 1799–1806 (2015).CAS 
    Article 

    Google Scholar 
    Blumstein, D. T. Habituation and sensitization: New thoughts about old ideas. Anim. Behav. 120, 255–262 (2016).Article 

    Google Scholar 
    Greggor, A. L., Berger-Tal, O. & Blumstein, D. T. the rules of attraction: The necessary role of animal cognition in explaining conservation failures and successes. Ann. Rev. Ecol. Evol. Syst. 51, 483–503 (2020).Article 

    Google Scholar 
    Imre, I., Di Rocco, R. T., McClure, H., Johnson, N. S. & Brown, G. E. Migratory-stage sea lamprey Petromyzon marinus stop responding to conspecific damage-released alarm cues after 4 h of continuous exposure in laboratory conditions. J. Fish Biol. 90, 1297–1304 (2017).CAS 
    PubMed 
    Article 

    Google Scholar 
    Wagner, C. M., Bals, J. D., Hanson, M. E. & Scott, A. M. Attenuation and recovery of an avoidance response to a chemical antipredator cue in an invasive fish: implications for use as a repellent in conservation. Cons. Phys. 10, 1–12 (2022).CAS 

    Google Scholar 
    Hussain, A. et al. High-affinity olfactory receptor for the death-associated odor cadaverine. Proc. Natl. Acad. Sci. U. S. A. 110, 19579–19584 (2013).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Yao, M. et al. The ancient chemistry of avoiding risks of predation and disease. Evol. Biol. 36, 267–281 (2009).Article 

    Google Scholar 
    Wisman, A. & Shrira, I. The smell of death: Evidence that putrescine elicits threat management. Front. Psychol. 6, 1–11 (2015).Article 

    Google Scholar 
    Oliveira, T. A. et al. Death-associated odors induce stress in zebrafish. Horm. Behav. 65, 340–344 (2014).PubMed 
    Article 

    Google Scholar 
    Pinel, J. P. J., Gorzalka, B. B. & Ladak, F. Cadaverine and Putrescine Initiate the Burial of Dead Conspecifics by Rats. Physiol. Behav. 27, 819–824 (1981).CAS 
    PubMed 
    Article 

    Google Scholar 
    Prounis, G. S. & Shields, W. M. Necrophobic behavior in small mammals. Behav. Processes 94, 41–44 (2013).PubMed 
    Article 

    Google Scholar 
    Sun, Q., Haynes, K. F. & Zhou, X. Dynamic changes in death cues modulate risks and rewards of corpse management in a social insect. Funct. Ecol. 31, 697–706 (2017).Article 

    Google Scholar 
    Heale, V. R., Petersen, K. & Vanderwolf, C. H. Effect of colchicine-induced cell loss in the dentate gyms and Ammon’s horn on the olfactory control of feeding in rats. Brain. Res. J. 712, 213–220 (1996).CAS 
    Article 

    Google Scholar 
    Rolen, S. H., Sorensen, P. W., Mattson, D. & Caprio, J. Polyamines as olfactory stimuli in the goldfish Carassius auratus. J. Exp. Biol. 206, 1683–1696 (2003).CAS 
    PubMed 
    Article 

    Google Scholar 
    Dissanayake, A. A., Wagner, C. M. & Nair, M. G. Nitrogenous compounds characterized in the deterrent skin extract of migratory adult sea lamprey from the Great Lakes region. PLoS ONE 14(5), e0217417. https://doi.org/10.1371/journal.pone.0168609 (2019).CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Cooke, M., Leeves, N. & White, C. Time profile of putrescine, cadaverine, indole and skatole in human saliva. Arch. Oral Biol. 9969, 323–327 (2003).Article 

    Google Scholar 
    Tilden, J. An account of a singular property of lamprey eels. Mem. Amer. Acad. Sci. 46, 335–336 (1809).
    Google Scholar 
    Di Rocco, R. T., Belanger, C. F., Imre, I., Brown, G. E. & Johnson, N. S. Daytime avoidance of chemosensory alarm cues by adult sea lamprey (Petromyzon marinus). Can. J. Fish. Aquat. Sci. 830, 824–830 (2014).Article 

    Google Scholar 
    Imre, I., Di Rocco, R. T., Brown, G. E. & Johnson, N. S. Habituation of adult sea lamprey repeatedly exposed to damage-released alarm and predator cues. Environ. Biol. Fishes 99, 613–620 (2016).Article 

    Google Scholar 
    Ferrari, M. C. O., Messier, F. & Chivers, D. P. Degradation of chemical alarm cues under natural conditions: Risk assessment by larval woodfrogs. Chemoecology 17, 263–266 (2008).Article 

    Google Scholar 
    Brown, G. E., Rive, A. C., Ferrari, M. C. O. & Chivers, D. P. The dynamic nature of antipredator behavior: Prey fish integrate threat-sensitive antipredator responses within background levels of predation risk. Behav. Ecol. Sociobiol. 61, 9–16 (2006).Article 

    Google Scholar 
    McCann, E. L., Johnson, N. S., Hrodey, P. J. & Pangle, K. L. Characterization of sea lamprey stream entry using dual-frequency identification sonar. Trans. Am. Fish. Soc. 147, 514–524 (2018).Article 

    Google Scholar 
    Binder, T. R. & McDonald, D. G. Is there a role for vision in the behaviour of sea lampreys (Petromyzon marinus) during their upstream spawning migration?. Can. J. Fish. Aquat. Sci. 64, 1403–1412 (2007).Article 

    Google Scholar 
    Wagner, C. M., Jones, M. L., Twohey, M. B. & Sorensen, P. W. A field test verifies that pheromones can be useful for sea lamprey (Petromyzon marinus) control in the Great Lakes. Can. J. Fish. Aquat. Sci. 63, 475–479 (2006).CAS 
    Article 

    Google Scholar 
    Wagner, C. M., Twohey, M. B. & Fine, J. M. Conspecific cueing in the sea lamprey: Do reproductive migrations consistently follow the most intense larval odour?. Anim. Behav. 78, 593–599 (2009).Article 

    Google Scholar 
    Boulêtreau, S. et al. High predation of native sea lamprey during spawning migration. Sci. Rep. 10, 6122. https://doi.org/10.1038/s41598-020-62916-w (2020).ADS 
    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Sjöberg, K. Time-related predator/prey interactions between birds and fish in a northern Swedish river. Oecologia 80, 1–10 (1989).ADS 
    PubMed 
    Article 

    Google Scholar 
    Fanselow, M. S., Hoffman, A. N. & Zhuravka, I. Timing and the transition between modes in the defensive behavior system. Behav. Processes 166, 103890. https://doi.org/10.1016/j.beproc.2019.103890 (2019).Fanselow, M. S. & Lester, L. S. A functional behavioristic approach to aversively motivated behavior: Predatory imminence as a determinant of the topography of defensive behavior. In Evolution and Learning (ed. Bolles, R.C. & Beecher, M.D.) 185–211 (Earlbaum, 1988).Dissanayake, A. A., Wagner, C. M. & Nair, M. G. Chemical characterization of lipophilic constituents in the skin of migratory adult sea lamprey from the Great Lakes Region. PLoS ONE 11(12), e0168609. https://doi.org/10.1371/journal.pone.0168609 (2016).CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Dissanayake, A. A., Wagner, C. M. & Nair, M. G. Evaluation of health benefits of sea lamprey (Petromyzon marinus) isolates using in vitro antiinflammatory and antioxidant assays. PLoS ONE 16(11), e0259587. https://doi.org/10.1371/journal.pone.0259587 (2021).CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    UFR-Committee. Guidelines for the use of fishes in research. Am. Fish. Soc. Symp., Bethesday, Maryland (2013).Association, A. V. M. Guidelines for the Euthanasia of. Animals https://doi.org/10.1016/B978-012088449-0.50009-1 (2013).Article 

    Google Scholar 
    du Sert, N. P. et al. Reporting animal research: Explanation and elaboration for the arrive guidelines 2.0. PLoS Biol. 18, 1–65 (2020).Friard, O. & Gamba, M. BORIS: A free versatile open-source event-logging software for video/ audio coding and live observations. Methods Ecol. Evol. 7, 1325–1330 (2016).Article 

    Google Scholar 
    Domenici, P. Context-dependent variability in the components of fish escape response: Integrating locomotor performance and behavior. J. Exp. Biol. 313, 59–79 (2010).
    Google Scholar 
    Perrault, K., Imre, I. & Brown, G. E. Behavioural response of larval sea lamprey (Petromyzon marinus) in a laboratory environment to potential damage-released chemical alarm cues. Can. J. Zool. 92, 443–447 (2014).Article 

    Google Scholar 
    Curtis, V., de Barra, M. & Aunger, R. Disgust as an adaptive system for disease avoidance behaviour. Philos. Trans. R. Soc. B Biol. Sci. 366, 389–401 (2011).Fanselow, M. S. The role of learning in threat imminence and defensive behaviors. Curr. Opin. Behav. Sci. 24, 44–49 (2018).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Helfman, G. S. Threat-sensitive predator avoidance in damselfish-trumpetfish interactions. Behav. Ecol. Sociobiol. 24, 47–58 (1989).Article 

    Google Scholar 
    Stephenson, J. F., Perkins, S. E. & Cable, J. Transmission risk predicts avoidance of infected conspecifics in Trinidadian guppies. J. Anim. Ecol. 87, 1525–1533 (2018).PubMed 
    Article 

    Google Scholar 
    Sepahi, A. et al. Olfactory sensory neurons mediate ultrarapid antiviral immune responses in a TrkA-dependent manner. Proc. Natl. Acad. Sci. U.S.A. 116, 12428–12436 (2019).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Croft, D. P., Edenbrow, M., Darden, S. K. & Cable, J. Effect of gyrodactylid ectoparasites on host behaviour and social network structure in guppies Poecilia reticulata. Behav. Ecol. Sociobiol. 65, 2219–2227 (2011).Article 

    Google Scholar 
    Luhring, T. M. et al. A semelparous fi sh continues upstream migration when exposed to alarm cue, but adjusts movement speed and timing. Anim. Behav. 121, 41–51 (2016).Article 

    Google Scholar 
    Laframboise, A. J., Ren, X., Chang, S., Dubuc, R. & Zielinski, B. S. Olfactory sensory neurons in the sea lamprey display polymorphisms. Neurosci. Lett. 414, 277–281 (2007).CAS 
    PubMed 
    Article 

    Google Scholar 
    Buchinger, T. J., Siefkes, M. J., Zielinski, B. S., Brant, C. O. & Li, W. Chemical cues and pheromones in the sea lamprey (Petromyzon marinus). Front. Zool. 12, 1–11 (2015).Article 

    Google Scholar 
    Halgand, F. et al. Defining intact protein primary structures from saliva: A step toward the human proteome project. Anal. Chem. 84, 4383–4395 (2012).CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Mackay, R. N., Wood, T. C. & Moore, P. A. Running away or running to? Do prey make decisions solely based on the landscape of fear or do they also include stimuli from a landscape of safety? J. Exp. Biol. 224, jeb242687. https://doi.org/10.1242/jeb.242687 (2021).Meckley, T. D., Gurarie, E., Miller, J. R. & Michaelwagner, C. How fishes find the shore: Evidence for orientation to bathymetry from the non-homing sea lamprey. Can. J. Fish. Aquat. Sci. 74, 2045–2058 (2017).Article 

    Google Scholar 
    Hume, J. B., Lucas, M. C., Reinhardt, U., Hrodey, P. J. & Wagner, C. M. Sea lamprey (Petromyzon marinus) transit of a ramp equipped with studded substrate: Implications for fish passage and invasive species control. Ecol. Eng. 155, 1–11 (2020).Article 

    Google Scholar 
    Ioannou, C. C., Ramnarine, I. W. & Torney, C. J. High-predation habitats affect the social dynamics of collective exploration in a shoaling fish. Sci. Adv. 3, e1602682. https://doi.org/10.1126/sciadv.1602682 (2017).Schaerf, T. M., Dillingham, P. W. & Ward, A. J. W. The effects of external cues on individual and collective behavior of shoaling fish. Sci. Adv. 3, e1603201. https://doi.org/10.1126/SCIADV.ABN2232 (2017).Hoare, D. J., Couzin, I. D., Godin, J. G. J. & Krause, J. Context-dependent group size choice in fish. Anim. Behav. 67, 155–164 (2004).Article 

    Google Scholar 
    Siefkes, M. J., Winterstein, S. R. & Li, W. Evidence that 3-keto petromyzonol sulphate specifically attracts ovulating female sea lamprey Petromyzon marinus. Anim. Behav. 70, 1037–1045 (2005).Article 

    Google Scholar 
    Wisenden, B. D. Evidence for incipient alarm signalling in fish. J. Anim. Ecol. 88, 1278–1280 (2019).PubMed 
    Article 

    Google Scholar 
    Petersen, R. S. The role of traditional ecological knowledge in understanding a species and river system at risk: Pacific Lamprey in the Lower Klamath Basin (Oregon State University, 2006).
    Google Scholar 
    Barton, B. A. Stress in fishes: A diversity of responses with particular reference to changes in. Integ. Comp. Biol. 525, 517–525 (2002).Article 

    Google Scholar 
    Lawrence, M. J., Godin, J. J. & Cooke, S. J. Comparative Biochemistry and Physiology, Part A Does experimental cortisol elevation mediate risk-taking and antipredator behaviour in a wild teleost fish?. Comp. Biochem. Physiol. Part A 226, 75–82 (2018).CAS 
    Article 

    Google Scholar 
    Conrad, J. L., Weinersmith, K. L., Brodin, T. & Saltz, J. B. Behavioural syndromes in fishes: A review with implications for ecology and fisheries management. J. Fish Biol. 78, 395–435 (2011).CAS 
    PubMed 
    Article 

    Google Scholar 
    Sanches, F. H. C., Miyai, C. A., Pinho-Neto, C. F. & Barreto, R. E. Stress responses to chemical alarm cues in Nile tilapia. Physiol. Behav. 149, 8–13 (2015).CAS 
    PubMed 
    Article 

    Google Scholar 
    Rehnberg, B. G. & Schreck, C. B. Chemosensory detection of predators by coho salmon (Oncorhynchus kisutch): Behavioral reaction and the physiological stress response1. Can. J. Zool. 65, 481–485 (1987).CAS 
    Article 

    Google Scholar 
    Rehnberg, B. G., Smith, R. J. F. & Sloley, B. D. The reaction of pearl dace (Pisces, Cyprinidae) to alarm substance: Time-course of behavior, brain amines, and stress physiology. Can. J. Zool. 65, 2916–2921 (1987).CAS 
    Article 

    Google Scholar 
    Close, D. A., Yun, S. S., McCormick, S. D., Wildbill, A. J. & Li, W. 11-Deoxycortisol is a corticosteroid hormone in the lamprey. Proc. Natl. Acad. Sci. U. S. A. 107, 13942–13947 (2010).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Shaughnessy, C. A. & Mccormick, S. D. 11-Deoxycortisol is a stress responsive and gluconeogenic hormone in a jawless vertebrate, the sea lamprey (Petromyzon marinus). J. Exp. Biol. 224, jeb241943. https://doi.org/10.1242/jeb.241943 (2021).Cull, F. et al. Consequences of experimental cortisol manipulations on the thermal biology of the checkered puffer (Sphoeroides testudineus) in laboratory and field environments. J. Therm. Biol. 47, 63–74 (2015).CAS 
    PubMed 
    Article 

    Google Scholar 
    Pleizier, N., Wilson, A. D. M., Shultz, A. D. & Cooke, S. J. Puffed and bothered: Personality, performance, and the effects of stress on checkered puffer fish. Physiol. Behav. 152, 68–78 (2015).CAS 
    PubMed 
    Article 

    Google Scholar 
    Lawrence, M. J. et al. An experimental evaluation of the role of the stress axis in mediating predator-prey interactions in wild marine fish. Comp. Biochem. Physiol. Part A 207, 21–29 (2017).CAS 
    Article 

    Google Scholar 
    Atema, J., Kingsford, M. J. & Gerlach, G. Larval reef fish could use odour for detection, retention and orientation to reefs. Mar. Ecol. Prog. Ser. 241, 151–160 (2002).ADS 
    Article 

    Google Scholar 
    Gardiner, J. M. & Atema, J. Sharks need the lateral line to locate odor sources: rheotaxis and eddy chemotaxis. J. Exp. Biol. 210, 1925–1934 (2007).PubMed 
    Article 

    Google Scholar 
    Jutfelt, F., Sundin, J., Raby, G. D., Krång, A. S. & Clark, T. D. Two-current choice flumes for testing avoidance and preference in aquatic animals. Methods Ecol. Evol. 8, 379–390 (2017).Article 

    Google Scholar 
    Moser, M. L., Almeida, P. R., Kemp, P. S. & Sorensen, P. W. Lamprey Spawning Migration in Lampreys: Biology, Conservation and Control. (ed. Docker, M. F.) 215–263 (Springer, 2015).Imre, I., Brown, G. E., Bergstedt, R. A. & Mcdonald, R. Use of chemosensory cues as repellents for sea lamprey: Potential directions for population management. J. Great Lakes Res. 36, 790–793 (2010).CAS 
    Article 

    Google Scholar 
    Merrick, M. J. & Koprowski, J. L. Should we consider individual behavior differences in applied wildlife conservation studies?. Biol. Conserv. 209, 34–44 (2017).Article 

    Google Scholar  More

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    Contrasting life-history responses to climate variability in eastern and western North Pacific sardine populations

    All procedures accorded to administrative provision of animal welfare of the Fisheries Research Education Agency Japan. All statistical tests used in this study are two-sided.Otolith samplesFrom the western North Pacific, age-0 JP sardine were collected from samples taken during acoustic and sub-surface trawl surveys in the offshore Oyashio region conducted during 2006–2010 and 2014–2015. The surveys were conducted by Japan Fisheries Research and Education Agency every autumn since 2005 which aim to estimate the abundance of small pelagic species. The abundance of young-of-the-year sardine in the region in the season, approximately 10–15 cm in standard length (SL), is considered a proxy for the abundance of recruits of the Pacific stock and used to tune the cohort analysis in stock assessment4. As representatives of the young-of-the-year population in the region, 2–6 trawl stations each year that had relatively larger catch-per-unit-effort were selected (Supplementary Fig. 1), and 9–20 individuals were randomly selected from each station for otolith analyses (Supplementary Table 1). Age of fish was initially judged by SL (10–15 cm) and later confirmed by the counts of otolith daily increments.From the eastern North Pacific, archived otoliths of CA sardine captured in cruise surveys and in the pelagic fishery of the Southern California Bight during 1987, 1991–1998, and 2005–2007 were collected. Fish in the size range of 10–16 cm SL were regarded as age-1 individuals born in the previous year, following Takahashi and Checkley56. The number of individuals varied between year classes in the range of 4–20 (Supplementary Table 2).Otolith processing, microstructure and somatic growth analysisSagittal otoliths were cleaned to remove the attached tissue in freshwater and then air-dried. Otoliths of JP sardine were embedded in epoxy resin (Petropoxy 154, Burnham Petrographics LLC) on slide-glass, while those of CA were glued to slide-glass using enamel resin and then ground and polished with sandpaper to expose the core. For some otoliths of CA sardine, the polished surface was coated with additional resin to facilitate identification of the daily increment width. Using an otolith measurement system (RATOC System Engineering Co. Ltd.), the number and location of daily increments were examined along the axis in the postrostrum from the core. Although daily increments were clearly observed until the otolith edge for JP sardine, it was difficult to do this for CA sardine probably because they had experienced winter when otolith growth slowed down. Therefore, the rings were counted as far as possible for CA sardine, which typically resulted in more than 150 counts. The first daily increment was assumed to form after 3 days post hatch (dph) for JP and 8 dph for CA sardine following Takahashi et al.26 and Takahashi and Checkley56. The otolith radius at each age was calculated by adding all the increment widths up to that age. Standard lengths at each age were back-calculated assuming a linear relationship between otolith radius and standard length using the biological intercept method34 as follows:$${SL}_{n}=left({{SL}}_{{catch}}-{{SL}}_{{first}}right)times left({{OR}}_{n}-{{OR}}_{{first}}right)/left({OR}_{catch}-{{OR}}_{{first}}right)+{{SL}}_{{first}}$$
    (1)
    where SLn is the standard length at age n, SLcatch is the standard length at catch, SLfirst is the standard length at the age of first daily increment deposition fixed at 5.9 mm for JP sardine and 5.5 mm for CA sardine following the previous studies26,56, ORn is the otolith radius at age n, ORfirst is the otolith radius at the age of first daily increment deposition, and ORcatch is the otolith radius at catch. Based on rearing experiments of field collected eggs, Lasker57 showed the SL of CA sardine at 6–8 dph ranged between 3.8 to 6.5 mm, and Matsuoka and Mitani58 showed the total length at 2–4 dph ranged between 4.8 to 6.2 mm, corresponding to 4.7 to 6.1 mm in SL. To deal with these uncertainties regarding the size at the age of first daily increment deposition, we conducted Monte Carlo simulations (10,000 times) to estimate the uncertainties of back-calculated SL, assuming that the initial SLs fall between 3.8 to 6.5 mm for both sardines. Standard deviations of the temporal back-calculated SL at each age were presented as the uncertainty of each SLn estimation, which varied between 0.51 and 0.73 at the end of larval stage (JP: 45 dph, CA: 60 dph), between 0.34 and 0.64 at the end of early juvenile stage (JP: 75 dph, CA: 90 dph) and between 0.20 and 0.53 at the end of late juvenile stage (JP: 105 dph, CA: 120 dph). These values were significantly smaller than the variability of estimated SL among individuals assuming initial sizes of 5.9 and 5.5 mm for JP and CA sardine, respectively (standard deviations: 4.2, 8.1 and 8.3 in JP sardine and 5.5, 9.1 and 10.3 in CA sardine for the end of larval, early juvenile and late juvenile stages, respectively), suggesting that the back-calculated SL is robust to variations of initial size. Nevertheless, the biological intercept method assumes a constant linear relationship between fish and otolith size within individual59, which can vary depending on physiological or environmental conditions60,61. Therefore, to examine the relationships between temperature and growth, we used both otolith growth, which contains fewer assumptions, and back-calculated somatic growth as growth proxies. Since the use of the two proxies did not show remarkable differences in the relationships between temperature and growth (Supplementary Figs. 11, 12), we mainly used the back-calculated SL in the discussion, which has a more direct ecological implication.To more generally test whether growth trajectories are different between the western and eastern boundary current systems, otolith growth data of JP and CA sardines were compared with those of sardines in the east to south and west coasts of South Africa. The biological intercept method to back-calculate standard length could not be used in sardine from South Africa because the size at catch was large, some over 20 cm, and otolith radius and standard length were not linearly correlated for fish of this size. Therefore, the otolith radius and increment width were directly used as proxy for size and growth in this comparison, respectively. For visualisation (Fig. 2a), the means of year class mean otolith radii were estimated for JP and CA sardines. For CA sardine, otolith radii at ages were simply averaged within each year class. For JP sardine, to account for the variation in the number of individuals captured at the same station, otolith radii were first averaged within each station, and the station means were averaged within each year, weighted by catch-per-unit-effort. For South African sardine, data of otolith daily increment widths from hatch to 100 dph of 67 adults captured at six stations on the east to south coast ( >22oE), and 51 individuals captured at six stations on the west coast ( 0.05). Theoretically, the relationship between metabolism and temperature tends to show a linear trend after the metabolic rate is log-transformed79. Thus, we applied “identity (data without transformed)” and “log (data transformed)” links to evaluate if model shows a better linearity with data transformation. Based on AIC, however, the result showed Moto have a better linearity without data transformation (Supplementary Table 7). We, therefore, used “identity” links for the further model selection. Model selection base on AIC was performed for models including temperature, region (JP and CA sardines), life history stages (larvae, early juvenile and late juvenile) and interactions of these factors. The full model including all the interactions had the lowest AIC (Supplementary Table 7). As the diagnostic for the full model showed normality and homogeneity of residuals (Supplementary Fig. 9), we selected this model for interpretation. The CA sardine at the larval stage as the baseline, we found only JP sardine at early and late juvenile stages has relatively higher Moto values, and the temperature-dependent slope is significantly gentler in JP sardine at early and late juvenile stages (Supplementary Table 8).Next, the diversity of Moto across temperature range was assessed to estimate the optimal temperature in each stage. The relationship between the maximum metabolic rate and temperature is known to be parabolic, while that between the standard metabolic rate and temperature is logarithmic28,79. As the highest field metabolic rate would be constrained by maximum metabolic rate and the lowest field metabolic rate would be close to resting metabolic rate43, fish would have the most diverse metabolic performance at the optimal temperature with the widest aerobic scope. Thus, we modelled the highest and lowest Moto values in each 1 °C bin using a polynomial regression and a generalised linear model with Gaussian distribution and a log link for the 95th and 5th percentile values of each bin, respectively (Supplementary Fig. 10). The values of the bin that included less than four values were excluded from the regression analyses to reduce the uncertainty caused by under-sampled temperature bins. The gap between the two regression lines was considered as a proxy for the aerobic scope, and the temperature at which the gap reached the maximum was regarded as the optimal temperature.Statistical analyses for the relationships between temperature and growthTo understand how variation in ambient water temperature affects early life growth of sardines, we compared back-calculated standard length at around the end of the larval stage (hatch–35 mm; JP: 45 dph, CA: 60 dph), the end of the early juvenile stage (35–60 mm; JP: 75 dph, CA: 90 dph), and the end of the late juvenile stage (60–85 mm; JP: 105 dph, CA: 120 dph) and the mean seawater temperature from hatch to the ages. Median of each sampling batch were used as minimal data unit. Pearson’s r and p-values were first calculated for each comparison (Supplementary Table 9). As the relationship between mean temperature and standard length of JP at 75 dph seemed to be dome-shaped rather than linear, we introduced quadratic term of temperature and tested whether the term increased explanatory power using a linear model and stepwise model selection based on AIC. The model selection showed that the full model (Standard length ∼ Temperature2 + Temperature) was the best model, and the coefficients of the quadratic and linear terms were both significant (Supplementary Table 10). To account for these multiple tests, we corrected the p-values of the coefficients of the quadratic term in the linear model for JP sardine at 75 dph and of the Pearson’s r for the rest using the Benjamini-Hochberg procedure with α = 0.05, and selected the null hypotheses that could be rejected (Supplementary Table 9). To compare the temperature that allow maximisation of growth rate and optimal temperature derived from the analysis of Moto for each stage, median somatic growth rate and otolith increment width in each 1 °C bin was calculated together with its 3-window running mean (Supplementary Figs. 11, 12).Statistical analyses for the relationships between sea surface temperature and survival indexTo test whether habitat temperatures during the first 4 months after hatch affect the survival of sardines in the first year of life on a multidecadal scale, satellite-derived sea surface temperature (SST) since 1982 and survival of JP and CA sardines were compared. The log recruitment residuals from Ricker recruitment models (LNRR)13, representing early life survivals taking into account the effect of population density, were calculated based on the stock assessment data for JP and CA sardines as follows:$${LNR}{R}_{t}={ln}({R}_{t}/{S}_{t}) , – , (a+btimes {S}_{t})$$
    (6)
    where LNRRt is the LNRR at year t, Rt is the recruitment of year-class t, St is the spawning stock biomass in year t, and a and b are the coefficients of linear regression of ln(Rt/St) on St. Pearson’s r between the LNRR and the mean SST values from March to June for JP and from April to July for CA sardine was calculated for each grid points in the western and eastern boundaries of the North Pacific basin, derived from a SST product based on satellite and in situ observations80 (Global Ocean OSTIA Sea Surface Temperature and Sea Ice Reprocessed (https://resources.marine.copernicus.eu/product-detail/SST_GLO_SST_L4_REP_OBSERVATIONS_010_011/INFORMATION), accessed on 11th August and 28th October 2021). The correlations were generally negative and positive in the western and eastern regions, respectively (Supplementary Fig 13a, b). In particular, mean SST values in the area where eggs, larvae and juveniles of JP or CA sardines are mainly found in the months26,39,49,56,78,81,82 (dotted areas in Supplementary Fig 13a, b) were compared with LNRR values to test the relationship between habitat temperature and survival in the early life stages (Supplementary Fig 13c). It should be noted that the mean SST values were not significantly correlated with otolith-derived year-class mean temperatures of JP and CA sardines during the larval to late juvenile stages (JP: r = 0.01, p = 0.98, n = 7, CA: r = 0.29, p = 0.38, n = 11), likely due to the short periods analysed, patchy distribution and inter annual variation in larval and juvenile dispersal and migration patterns. Nevertheless, the regions included areas where SST showed weak to significant (p  More

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    GABB: A global dataset of alpine breeding birds and their ecological traits

    Defining alpine habitat and mountain regionsWe defined alpine habitat as the area above climatic treeline, including the nival belt, where temperature, wind, drought, snow, or nightly frost limit vegetation growth to shrubs, krummholz, or fragmented tree patches less than 3 m in height3,23,24. Realized treeline can be markedly lower than the climatic treeline due to the absence of continuous forest at lower elevations, or human activities such as logging, burning, and livestock grazing25. While anthropogenically influenced treeline produces habitat reminiscent of alpine meadows, these habitats are not climatically representative of alpine ecosystems and thus they were not included when assembling this dataset. Climatic treeline elevation varies globally based on latitude, topography, aspect, and proximity to the coast (i.e., oceanic influence)11. Therefore, we defined alpine habitat separately for each mountain region based on local climate and published accounts of alpine vegetation. While alpine habitats usually occur above at least 1,500 m elevation globally, at high latitudes ( >55°N or 41°S) this elevation can be as low as ~400 m26 (Fig. 2).Fig. 2The median (triangular points) and range (error bars) of treeline elevation for each of the main mountain regions covered in the dataset (Fig. 1). The mountain regions are arranged from north to south (left to right) and the grey dashed line represents the relative position of the equator. Treeline elevation was derived from different sources depending on the region (see ‘Data sources’ in the dataset). The abbreviation ‘NA’, such as in ‘Northwestern NA’, refers to North America.Full size imageThe alpine habitats we identified broadly align with the ‘lower alpine’, ‘upper alpine’, and ‘nival’ belts mapped by Korner et al.9 and made available by the Global Mountain Biodiversity Assessment project (http://www.mountainbiodiversity.org/explore)27,28. However, certain areas, such as the Sierras de Córdoba, Argentina or the Isthmian Páramo on volcanoes in Central America were classified as ‘upper montane’ by Korner et al.9 based on thermal belts alone. For the purposes of this dataset, we considered these regions alpine habitat based on published measurements of treeline and distinct alpine plant communities facilitated by a mixture of temperature, precipitation, nightly frost, and wind constraints. For example, the Drakensberg range in South Africa was identified as ‘upper montane’ only, but botanical studies have characterized the region as Themeda-Festuca grassland from 1,900–2,800 m and alpine heathlands above 2,800 m13, representing extensive habitat above treeline. As a result, our definition of alpine habitat expands on the thermal belts mapped by Korner et al.9. In this way, the avian communities we identified retain species lineages that are confined to cooler high elevation habitats, representing remnants of more extensive alpine ecosystems from the last glaciation event.We grouped mountain ranges into 12 global regions and 38 subregions based on similar climates and alpine vegetation stemming from shared geographic position (Tables 2, 3; Fig. 1). The ‘Islands’ category represents very limited alpine habitat on four disparate islands that do not easily fit within any other major region, but nevertheless occur in subtropical or tropical realms: Hawaii, Sumatra, Borneo, and the Canary Islands. Alpine breeding birds and life-history traits were identified for each individual region so that future analyses can either include or remove mountain ranges depending on their definition of alpine habitat. This approach also promotes comparisons of avian communities at a finer scale across the full diversity of alpine habitats.Table 2 Description of the major regions and specific mountain ranges in the Americas that are included in the dataset.Full size tableTable 3 Description of the major regions and specific mountain ranges from Eurasia, Africa, and Oceania, plus the miscellaneous mountain ‘Islands’ region.Full size tableAlpine breeding bird speciesFor each region described in Tables 2 and 3, we assembled a list of alpine breeding species from published literature, environmental assessment reports, regional monitoring schemes, bird atlases, and expert knowledge following the most recent International Ornithology Committee taxonomy, version 12.129. An alpine breeding bird is any species that nests above treeline, regardless of how frequently, such that all or a certain proportion of a species is dependent on alpine habitat during the breeding season. Due to certain data-deficiencies underlying existing species range estimates above treeline, using knowledge from regional experts was the most accurate method to assemble a global list of alpine breeding birds for most mountain regions. See the Technical Validation section for specifics on how we validated the use of expert knowledge when assembling species and their traits for the Global Alpine Breeding Bird list.Species traitsWe included species traits that fall under three general topics: 1) alpine breeding propensity, 2) ecological traits, and 3) conservation value. Alpine breeding propensity includes breeding habitat specialization and alpine breeding status, ecological traits include migration behaviour and nest traits, while conservation value encompasses mountain endemism and conservation status. Together, these variables broadly reflect alpine habitat use during the breeding season globally, as well as provide the basis for evaluating the conservation potential and risks for alpine bird communities. We recorded general trait specifications for each species using available resources such as Birds of the World30, the IUCN Red List31, and AVONET21. We then solicited region-specific traits from regional experts and the same review process was conducted for these traits as for alpine breeding evidence (see Technical Validation). All traits were specific to alpine breeding birds whenever possible. The global distribution of each species trait can be visualized in Fig. 3.Fig. 3The global distribution for each trait included in the dataset, including (a–c) alpine breeding propensity, (d–f) ecological traits, and (g–i) traits relevant to conservation status and data uncertainty. In all cases except panel c the y-axis is the proportion of all 1,310 alpine breeding species identified in the dataset. Panel c depicts the elevational breeding distribution expected from the different combinations of breeding specialization and alpine breeding status to visualize the probability of breeding above treeline. In Panel e, ‘BP’ refers to brood parasite. See Table 4 or the metadata for full descriptions of each trait.Full size imageSpecialization for breeding in alpine habitats (hereafter ‘breeding specialization’) and the propensity to breed in alpine habitats (hereafter ‘breeding status’) form a tiered estimate of alpine breeding behaviour. First, we classified each species into one of three breeding specialization categories to differentiate among species that predominantly breed above treeline (alpine specialists), breed both above and below treeline (elevational generalists) or are limited to high latitude tundra habitats (tundra specialists). The latter includes alpine-Arctic or alpine-Antarctic transition zones, where species nest in higher, drier tundra (approximately >400 m elevation) but may also breed in wet tundra at lower or coastal elevations. In this way, we clearly identified species that breed in alpine tundra habitat, but where tundra is the primary driver of breeding presence, not necessarily selection for high elevation. Under breeding status, we quantified the likelihood of breeding above treeline relative to below treeline as common, uncommon, or rare. Alpine specialists are always common alpine breeders (regardless of their density and distribution), but generalists or tundra specialists can be common, uncommon, or rare breeders in alpine habitats depending on whether they are found breeding consistently above treeline, more often breeding below treeline, or only incidentally breeding in the alpine, respectively. Together, these variables identify a species’ relative probability of breeding along the elevational gradient and with respect to the treeline (Fig. 3).We used two nest traits to identify the general breeding niche of each species: nest type and nest site. Nest type included three primary category levels (open cup, cavity, domed nest), while nest site was subdivided into seven levels (ground, bank, shrub, tree, rock, cliff, and glacier). Brood parasite species, which will use a range of nest types and sites depending on the host species, were placed in an additional ‘brood parasite’ category for each nest trait. A species with an open cup or domed nest is limited to placing the nest on the ground, in vegetation (e.g., a shrub or stunted tree), or on a cliff, while cavity nesters may be in a bank (i.e., burrow/tunnel), in a rock (e.g., crevice), or in a tree (e.g., natural or excavated cavity). If nest traits were undescribed for a certain species, we inferred nest traits from the most closely related species in similar high elevation habitats (see Data uncertainty).Species were assigned to three migration categories based on their predominant behaviour: resident, short-distance, and long-distance migrants. Resident species remain near their breeding habitat year-round, allowing for occasional, short-term movements in response to extreme weather events. Short-distance migrants conduct seasonal altitudinal migrations, short latitudinal migrations, or nomadic movements where the species remains within the general breeding region (e.g., within the temperate zone). Long-distance migrants travel extensive distances to winter in an entirely different region than their breeding habitat (e.g., temperate breeders to tropical habitats). A general threshold of 3,000 km was used to distinguish between short- and long-distance migrants because it approximates the distance traveled from the Himalayas to the southern coast of India, Northern Europe to the Mediterranean coast, or Alaska to California. In other words, this distance represents a relatively consistent reference across global regions. While there are finer-scale migration designations that could be made, such as partial or altitudinal migration, we lack detailed movement data for most species and regions. Although a global list of potential altitudinal migrants exists that can be incorporated with this alpine breeding bird dataset if desired32, altitudinal migration often co-occurs with short-distance latitudinal movements and there are considerable differences in migration behaviour among subspecies, populations, and even individuals33. We therefore chose to use established migration categories that align with other global trait databases. In fact, our migration designations were largely congruent with those in AVONET21, with the primary difference being between resident and short-distance migrants. We identified ~200 short-distance migrants that were considered sedentary (resident) under the AVONET classification. This difference is to be expected given that we defined migration behaviour for alpine breeding populations compared to global trait values for all populations. For many species, alpine breeding birds will depart higher elevations during winter to avoid severe weather conditions, even though low elevation populations of the same species may be predominantly resident34. Therefore, the three broad categories chosen here are intended to balance available information with sufficient accuracy to provide data useful for large-scale life-history and biogeographic analyses of alpine breeding birds.Mountain endemism refers to a species whose breeding range is restricted by physical, environmental, or biological barriers to a general mountain region and the surrounding low elevation habitat. For example, a species breeding only on the Tibetan Plateau was classified as an endemic species, but a species that breeds across the Tibetan Plateau, the Himalayas, and the Altai Mountains was classified as non-endemic. When possible, we also classified endemism for defined subspecies. Species endemism is a more conservative metric, while subspecies endemism attempts to estimate additional cryptic endemism given that species differentiation is not well-defined for many high elevation birds. For example, the Caucasus Mountains support several distinct subspecies isolated from their primary distributions, including the Great rosefinch (Carpodacus rubicilla rubicilla), Dunnock (Prunella modularis obscura), and Güldenstädt’s redstart (Phoenicurus erythrogastrus erythrogastrus).Finally, conservation status refers to the IUCN Red List designations, version 2022-131. In addition to the traditional IUCN categories (e.g., Least Concern, Near Threatened, Vulnerable, etc.), we also included a Not Assessed (NA) category that generally occurred when a species was recently split. See Table 4 for complete definitions of all traits.Table 4 Definitions of species traits included in the Global Alpine Breeding Bird dataset.Full size tableData uncertaintyGlobally, there is significant variation in accessibility to alpine habitats and funding for alpine research. As a result, uncertainty in alpine breeding status may differ among regions and species. For example, in New Guinea, mist-net surveys and point counts across elevation have identified species that frequently use alpine habitat, but a dearth of breeding biology studies means that there are few nest records above treeline. It is thus necessary to codify this level of uncertainty for each species.To this effect, we included a variable termed ‘Data reliability’, which is a four-level categorical variable from 0 to 3 that is based on the number of reported nests that have been found and described for each species. We used the presence of nest descriptions to evaluate uncertainty because active nests are the must fundamental form of evidence for breeding above treeline, and therefore it is reasonable that a species with less existing knowledge about nest traits or nesting behaviours will have considerably more uncertainty around its designation as an alpine breeding species. For this variable, 0 indicates that nest traits are undescribed for a given species, 1 means less than five nests have been described, 2 indicates more than five nests have been described, but all from a single population, and therefore there is limited understanding of geographic variation, while 3 occurs when nests have been described from multiple populations or regions. If nest traits were undescribed for a species (data reliability = 0), then nest type and site were inferred from the most closely related species with available data, and whenever possible, a congener was selected that also breeds at high elevations or in alpine habitats. While the nest traits of most species have been sufficiently described, there is a significant proportion of alpine breeding birds with less available data (27.0%; Fig. 3i). The relative number of described nests was derived from Birds of the World30. We recognize that these data may not reflect true knowledge of nest traits given that not all species accounts have been recently updated. However, it does represent a consistent data source that allowed us to approximate data reliability sufficiently for our purposes.In combination, data reliability and alpine breeding status fully characterize alpine breeding uncertainty. For example, a species considered a rare alpine breeder with a data reliability of 3, means that there is strong evidence for breeding above treeline, but only incidentally under very specific circumstances. However, a rare alpine breeder with a data reliability of zero (i.e., nest undescribed), means that the likelihood of breeding above treeline may be probable based on behavioural observations, but further confirmation is required. When using this dataset for analyses, one must decide whether to use a conservative approach or consider all potential alpine breeding species with the appropriate caveats (see Usage Notes). More

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    Ecological factors are likely drivers of eye shape and colour pattern variations across anthropoid primates

    Kobayashi, H. & Kohshima, S. Unique morphology of the human eye. Nature 387(6635), 767–768 (1997).ADS 
    CAS 
    PubMed 
    Article 

    Google Scholar 
    Kobayashi, H. & Kohshima, S. Unique morphology of the human eye and its adaptive meaning: Comparative studies on external morphology of the primate eye. J. Hum. Evol. 40(5), 419–435 (2001).CAS 
    PubMed 
    Article 

    Google Scholar 
    Mayhew, J. A. & Gómez, J. C. Gorillas with white sclera: A naturally occurring variation in a morphological trait linked to social cognitive functions. Am. J. Primatol. 77, 869–877 (2015).PubMed 
    Article 

    Google Scholar 
    Perea-García, J. O. Quantifying ocular morphologies in extant primates for reliable interspecific comparisons. J. Lang. Evol. 1(2), 151–158 (2016).Article 

    Google Scholar 
    Perea-García, J. O., Kret, M. E., Monteiro, A. & Hobaiter, C. Scleral pigmentation leads to conspicuous, not cryptic, eye morphology in chimpanzees. Proc. Natl. Acad. Sci. 116(39), 19248–19250 (2019).ADS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Caspar, K., Biggemann, M., Geissmann, T. & Begall, S. Ocular pigmentation in humans, great apes, and gibbons is not suggestive of communicative functions. Sci. Rep. 11, 1–14 (2021).Article 

    Google Scholar 
    Mearing, A. S. & Koops, K. Quantifying gaze conspicuousness: Are humans distinct from chimpanzees and bonobos?. J. Hum. Evol. 157, 103043. https://doi.org/10.1016/J.JHEVOL.2021.103043 (2021).Article 
    PubMed 

    Google Scholar 
    Perea-García, J. O., Danel, D. P. & Monteiro, A. Diversity in primate external eye morphology: Previously undescribed traits and their potential adaptive value. Symmetry 13, 1270 (2021).ADS 
    Article 

    Google Scholar 
    Banks, M. S., Sprague, W. W., Schmoll, J., Parnell, J. A. & Love, G. D. Why do animal eyes have pupils of different shapes?. Sci. Adv. 1(7), e1500391 (2015).ADS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Corfield, J. R. et al. Anatomical specializations for nocturnality in a critically endangered parrot, the kakapo (Strigops habroptilus). PLoS ONE 6(8), e22945 (2011).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Lisney, T. J. et al. Ecomorphology of eye shape and retinal topography in waterfowl (Aves: Anseriformes: Anatidae) with different foraging modes. J. Comp. Physiol. A. 199(5), 385–402 (2013).Article 

    Google Scholar 
    Lisney, T. J., Iwaniuk, A. N., Bandet, M. V. & Wylie, D. R. Eye shape and retinal topography in owls (Aves: Strigiformes). Brain Behav. Evol. 79(4), 218–236 (2012).PubMed 
    Article 

    Google Scholar 
    Duke-Elder, S. S. The eye in evolution. In System of Ophthalmology (ed. Duke-Elder, S. S.) 453 (Henry Kimpton, 1985).
    Google Scholar 
    -Miller, D., & Sanghvi, S. (1990). Contrast sensitivity and glare testing in corneal disease. In Glare and Contrast Sensitivity for Clinicians (pp. 45–52). Springer.De Broff, B. M. & Pahk, P. J. The ability of periorbitally applied antiglare products to improve contrast sensitivity in conditions of sunlight exposure. Arch. Ophthalmol. 121(7), 997–1001 (2003).Article 

    Google Scholar 
    Caspar, K. R., Mader, L., Pallasdies, F., Lindenmeier, M. & Begall, S. Captive gibbons (Hylobatidae) use different referential cues in an object-choice task: Insights into lesser ape cognition and manual laterality. PeerJ 6, e5348 (2018).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Kaplan, G. & Rogers, L. J. Patterns of gazing in orangutans (Pongo pygmaeus). Int. J. Primatol. 23(3), 501–526 (2002).Article 

    Google Scholar 
    Kamilar, J. M. & Bradley, B. J. Interspecific variation in primate coat colour supports Gloger’s rule. J. Biogeogr. 38(12), 2270–2277 (2011).Article 

    Google Scholar 
    Santana, S. E., Lynch Alfaro, J. & Alfaro, M. E. Adaptive evolution of facial colour patterns in Neotropical primates. Proc. R. Soc. B Biol. Sci. 279(1736), 2204–2211 (2012).Article 

    Google Scholar 
    Santana, S. E., Alfaro, J. L., Noonan, A. & Alfaro, M. E. Adaptive response to sociality and ecology drives the diversification of facial colour patterns in catarrhines. Nat. Commun. 4(1), 1–7 (2013).Article 

    Google Scholar 
    Delhey, K. A review of Gloger’s rule, an ecogeographical rule of colour: Definitions, interpretations and evidence. Biol. Rev. 94(4), 1294–1316 (2019).PubMed 

    Google Scholar 
    Zhang, P. & Watanabe, K. Preliminary study on eye colour in Japanese macaques (Macaca fuscata) in their natural habitat. Primates 48(2), 122–129 (2007).PubMed 
    Article 

    Google Scholar 
    Bradley, B. J., Pedersen, A. & Mundy, N. I. Brief communication: blue eyes in lemurs and humans: Same phenotype, different genetic mechanism. Am. J. Phys. Anthropol. 139(2), 269–273 (2009).PubMed 
    Article 

    Google Scholar 
    Meyer, W. K., Zhang, S., Hayakawa, S., Imai, H. & Przeworski, M. The convergent evolution of blue iris pigmentation in primates took distinct molecular paths. Am. J. Phys. Anthropol. 151(3), 398–407 (2013).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Negro, J. J., Blázquez, M. C. & Galván, I. Intraspecific eye color variability in birds and mammals: A recent evolutionary event exclusive to humans and domestic animals. Front. Zool. 14(1), 1–6 (2017).Article 

    Google Scholar 
    van den Berg, T. J. T. P., IJspeert, J. K. & De Waard, P. W. T. Dependence of intraocular straylight on pigmentation and light transmission through the ocular wall. Vis. Res. 31(7–8), 1361–1367 (1991).PubMed 
    Article 

    Google Scholar 
    Mure, L. S. Intrinsically photosensitive retinal ganglion cells of the human retina. Front. Neurol. 12, 636330 (2021).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Wald, L. (2018). Basics in solar radiation at earth surface. ffhal-01676634ff.Workman, L. Blue eyes keep away the winter blues: Is blue eye pigmentation an evolved feature to provide resilience to seasonal affective disorder. OA J. Behav. Sci. Psychol. 1(1), 180002 (2018).MathSciNet 

    Google Scholar 
    Smith, A. R. Color gamut transform pairs. ACM Siggraph Comput. Graph. 12(3), 12–19 (1978).CAS 
    Article 

    Google Scholar 
    Kamilar, J. M. & Cooper, N. Phylogenetic signal in primate behaviour, ecology and life history. Philos. Trans. R. Soc. B: Biol. Sci. 368(1618), 20120341 (2013).Article 

    Google Scholar 
    Leutenegger, W. & Kelly, J. T. Relationship of sexual dimorphism in canine size and body size to social, behavioral, and ecological correlates in anthropoid primates. Primates 18(1), 117–136. https://doi.org/10.1007/bf02382954 (1977).Article 

    Google Scholar 
    Gómez, J. C. (1996). Ostensive behavior in great apes: The role of eye contact. Reaching into thought: The minds of the great apes, 131–151.Dovidio, J. F., & Ellyson, S. L. (1985). Pattern of visual dominance behavior in humans. In Power, Dominance, and Nonverbal Behavior (pp. 129–149). Springer.Nakatsukasa, M. Locomotor differentiation and different skeletal morphologies in mangabeys (Lophocebus and Cercocebus). Folia Primatol. 66(1–4), 15–24 (1996).CAS 
    Article 

    Google Scholar 
    Smith, R. J. & Jungers, W. L. Body mass in comparative primatology. J. Hum. Evol. 32(6), 523–559 (1997).CAS 
    PubMed 
    Article 

    Google Scholar 
    Fioletov, V., Kerr, J. B. & Fergusson, A. The UV index: Definition, distribution and factors affecting it. Can. J. Public Health 101(4), I5–I9 (2010).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Jablonski, N. G. & Chaplin, G. Human skin pigmentation as an adaptation to UV radiation. Proc. Natl. Acad. Sci. 107(Supplement 2), 8962–8968 (2010).ADS 
    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Do, M. T. H. & Yau, K. W. Intrinsically photosensitive retinal ganglion cells. Physiol. Rev. (2010).Pickard, G. E. & Sollars, P. J. Intrinsically photosensitive retinal ganglion cells. Rev. Physiol. Bioch. Pharmacol. 162, 59–90 (2012).Goel, N., Terman, M. & Terman, J. S. Depressive symptomatology differentiates subgroups of patients with seasonal affective disorder. Depress. Anxiety 15(1), 34–41 (2002).PubMed 
    Article 

    Google Scholar 
    Münch, M. et al. Blue-enriched morning light as a countermeasure to light at the wrong time: Effects on cognition, sleepiness, sleep, and circadian phase. Neuropsychobiology 74(4), 207–218 (2016).PubMed 
    Article 

    Google Scholar 
    Davidson, G. L., Thornton, A. & Clayton, N. S. Evolution of iris colour in relation to cavity nesting and parental care in passerine birds. Biol. Let. 13(1), 20160783 (2017).Article 

    Google Scholar 
    Volpato, G. L., Luchiari, A. C., Duarte, C. R. A., Barreto, R. E. & Ramanzini, G. C. Eye color as an indicator of social rank in the fish Nile tilapia. Braz. J. Med. Biol. Res. 36, 1659–1663 (2003).CAS 
    PubMed 
    Article 

    Google Scholar 
    Fosbury, R. A. & Jeffery, G. Reindeer eyes seasonally adapt to ozone-blue Arctic twilight by tuning a photonic tapetum lucidum. Proc. R. Soc. B 289(1977), 20221002 (2022).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Allen, W. L., Stevens, M. & Higham, J. P. Character displacement of Cercopithecini primate visual signals. Nat. Commun. 5(1), 1–10 (2014).Article 

    Google Scholar 
    Frost, P. European hair and eye color: A case of frequency-dependent sexual selection?. Evol. Hum. Behav. 27(2), 85–103 (2006).Article 

    Google Scholar 
    Hart, D. (2000). Primates as prey: Ecological, morphological and behavioral relationships between primate species and their predators.Liebal, K., Waller, B. M., Slocombe, K. E. & Burrows, A. M. Primate communication: a multimodal approach. (Cambridge University Press, 2014).
    Google Scholar 
    Whitham, W., Schapiro, S. J., Troscianko, J. & Yorzinski, J. L. Chimpanzee (Pan troglodytes) gaze is conspicuous at ecologically-relevant distances. Sci. Rep. 12(1), 1–7 (2022).Article 

    Google Scholar 
    Kano, F., Kawaguchi, Y. & Hanling, Y. Experimental evidence that uniformly white sclera enhances the visibility of eye-gaze direction in humans and chimpanzees. Elife 11, e74086 (2022).CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Emery, N. J. The eyes have it: The neuroethology, function and evolution of social gaze. Neurosci. Biobehav. Rev. 24, 581–604 (2000).CAS 
    PubMed 
    Article 

    Google Scholar 
    -Bourjade, M. (2016). Social attention. Int. Encycl. Primatol. 1–2.Petersen, R. M., Dubuc, C. & Higham, J. P. Facial displays of dominance in non-human primates. In The facial displays of leaders (pp. 123–143) (Palgrave Macmillan, Cham, 2018).Laitly, A., Callaghan, C. T., Delhey, K. & Cornwell, W. K. Is color data from citizen science photographs reliable for biodiversity research?. Ecol. Evol. 11(9), 4071–4083 (2021).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Chan, I. Z., Stevens, M. & Todd, P. A. PAT-GEOM: A software package for the analysis of animal patterns. Methods Ecol. Evol. 10(4), 591–600 (2019).Article 

    Google Scholar 
    Felsenstein, J. Phylogenies and the comparative method. Am. Nat. 125(1), 1–15 (1985).Article 

    Google Scholar 
    Revell, L. J. phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol. 3(2), 217–223 (2012).Article 

    Google Scholar 
    Pagel, M. Inferring the historical patterns of biological evolution. Nature 401, 877–884 (1999).ADS 
    CAS 
    PubMed 
    Article 

    Google Scholar 
    Orme, D. et al. The caper package: Comparative analysis of phylogenetics and evolution in R. R Pack. Vers. 5(2), 1–36 (2013).
    Google Scholar 
    Wickham, H. ggplot2: Elegant Graphics for Data Analysis (Springer, 2016).MATH 
    Book 

    Google Scholar 
    -Williamson, E. A., Maisels, F. G., Groves, C. P., Fruth, B. I., Humle, T., & Morton, F. B. (2013). Handbook of the Mammals of the World Volume 3: Primates. More

  • in

    Marine heatwaves of different magnitudes have contrasting effects on herbivore behaviour

    Abram, P. K., Boivin, G., Moiroux, J. & Brodeur, J. Behavioural effects of temperature on ectothermic animals: Unifying thermal physiology and behavioural plasticity. Biol. Rev. 92, 1859–1876 (2017).Article 

    Google Scholar 
    Horwitz, R. et al. Near-future ocean warming and acidification alter foraging behaviour, locomotion, and metabolic rate in a keystone marine mollusc. Sci. Rep. 10, 5461 (2020).ADS 
    Article 

    Google Scholar 
    Minuti, J. J., Byrne, M., Hemraj, D. A. & Russell, B. D. Capacity of an ecologically key urchin to recover from extreme events: Physiological impacts of heatwaves and the road to recovery. Sci. Total Environ. 785, 147281 (2021).ADS 
    CAS 
    Article 

    Google Scholar 
    Angilletta, M. J., Niewiarowski, P. H. & Navas, C. A. The evolution of thermal physiology in ectotherms. J. Therm. Biol. 27, 249–268 (2002).Article 

    Google Scholar 
    Brown, J. H., Gillooly, J. F., Allen, A. P., Savage, V. M. & West, G. B. Toward a metabolic theory of ecology. Ecology 85, 1771–1789 (2004).Article 

    Google Scholar 
    Angilletta Jr., M. J. Thermal Adaptation: A Theoretical and Empirical Synthesis. (Oxford University Press, 2009). https://doi.org/10.1093/acprof:oso/9780198570875.001.1.Mertens, N. L., Russell, B. D. & Connell, S. D. Escaping herbivory: Ocean warming as a refuge for primary producers where consumer metabolism and consumption cannot pursue. Oecologia 179, 1223–1229 (2015).ADS 
    Article 

    Google Scholar 
    Hobday, A. J. et al. A hierarchical approach to defining marine heatwaves. Prog. Oceanogr. 141, 227–238 (2016).ADS 
    Article 

    Google Scholar 
    Oliver, E. C. J. et al. Longer and more frequent marine heatwaves over the past century. Nat. Commun. 9, 1324 (2018).ADS 
    Article 

    Google Scholar 
    Oliver, E. C. J. et al. Projected marine heatwaves in the 21st century and the potential for ecological impact. Front. Mar. Sci. 6, 734 (2019).Article 

    Google Scholar 
    Smale, D. A. & Wernberg, T. Extreme climatic event drives range contraction of a habitat-forming species. Proc. R. Soc. B Biol. Sci. 280, 20122829 (2013).Article 

    Google Scholar 
    Wernberg, T. et al. Climate-driven regime shift of a temperate marine ecosystem. Science 353, 169–172 (2016).ADS 
    CAS 
    Article 

    Google Scholar 
    Atkinson, J., King, N. G., Wilmes, S. B. & Moore, P. J. Summer and winter marine heatwaves favor an invasive over native seaweeds. J. Phycol. 56, 1591–1600 (2020).CAS 
    Article 

    Google Scholar 
    Hemraj, D. A., Posnett, N. C., Minuti, J. J., Firth, L. B. & Russell, B. D. Survived but not safe: Marine heatwave hinders metabolism in two gastropod survivors. Mar. Environ. Res. 162, 105117 (2020).CAS 
    Article 

    Google Scholar 
    Vinagre, C. et al. Vulnerability to climate warming and acclimation capacity of tropical and temperate coastal organisms. Ecol. Indic. 62, 317–327 (2016).Article 

    Google Scholar 
    Vinagre, C. et al. Ecological traps in shallow coastal waters—Potential effect of heat-waves in tropical and temperate organisms. PLoS ONE 13, e0192700 (2018).Article 

    Google Scholar 
    Falkenberg, L. J., Russell, B. D. & Connell, S. D. Future herbivory: The indirect effects of enriched CO2 may rival its direct effects. Mar. Ecol. Prog. Ser. 492, 85–95 (2013).ADS 
    CAS 
    Article 

    Google Scholar 
    Lorda, J., Hechinger, R. F., Cooper, S. D., Kuris, A. M. & Lafferty, K. D. Intraguild predation by shore crabs affects mortality, behavior, growth, and densities of California horn snails. Ecosphere 7, e01262 (2016).Article 

    Google Scholar 
    Falkenberg, L. J., Connell, S. D. & Russell, B. D. Herbivory mediates the expansion of an algal habitat under nutrient and CO2 enrichment. Mar. Ecol. Prog. Ser. 497, 87–92 (2014).ADS 
    CAS 
    Article 

    Google Scholar 
    Vergés, A. et al. The tropicalization of temperate marine ecosystems: Climate-mediated changes in herbivory and community phase shifts. Proc. R. Soc. B Biol. Sci. 281, 20140846 (2014).Article 

    Google Scholar 
    Brothers, C. J. & McClintock, J. B. The effects of climate-induced elevated seawater temperature on the covering behavior, righting response, and Aristotle’s lantern reflex of the sea urchin Lytechinus variegatus. J. Exp. Mar. Biol. Ecol. 467, 33–38 (2015).Article 

    Google Scholar 
    DeWhatley, M. C. & Alexander, J. E. Impacts of elevated water temperatures on righting behavior and survival of two freshwater caenogastropod snails. Mar. Freshw. Behav. Physiol. 51, 251–262 (2018).Article 

    Google Scholar 
    Sokolova, I. M. & Pörtner, H.-O. Metabolic plasticity and critical temperatures for aerobic scope in a eurythermal marine invertebrate (Littorina saxatilis, Gastropoda: Littorinidae) from different latitudes. J. Exp. Biol. 206, 195–207 (2003).Article 

    Google Scholar 
    Sokolova, I. M., Frederich, M., Bagwe, R., Lannig, G. & Sukhotin, A. A. Energy homeostasis as an integrative tool for assessing limits of environmental stress tolerance in aquatic invertebrates. Mar. Environ. Res. 79, 1–15 (2012).CAS 
    Article 

    Google Scholar 
    Monaco, C. J., McQuaid, C. D. & Marshall, D. J. Decoupling of behavioural and physiological thermal performance curves in ectothermic animals: a critical adaptive trait. Oecologia 185, 583–593 (2017).ADS 
    Article 

    Google Scholar 
    Anderson, K. M. & Falkenberg, L. J. Variation in thermal performance curves for oxygen consumption and loss of critical behaviors in co-occurring species indicate the potential for ecosystem stability under ocean warming. Mar. Environ. Res. 172, 105487 (2021).CAS 
    Article 

    Google Scholar 
    Lemmnitz, G., Schuppe, H. & Wolff, H. G. Neuromotor bases of the escape behaviour of Nassa Mutabilis. J. Exp. Biol. 143, 493–507 (1989).Article 

    Google Scholar 
    Poore, A. G. B. et al. Global patterns in the impact of marine herbivores on benthic primary producers. Ecol. Lett. 15, 912–922 (2012).Article 

    Google Scholar 
    Britton, D. et al. Adjustments in fatty acid composition is a mechanism that can explain resilience to marine heatwaves and future ocean conditions in the habitat-forming seaweed Phyllospora comosa (Labillardière) C. Agardh. Glob. Change Biol. 26, 3512–3524 (2020).ADS 
    Article 

    Google Scholar 
    Suryan, R. M. et al. Ecosystem response persists after a prolonged marine heatwave. Sci. Rep. 11, 6235 (2021).ADS 
    CAS 
    Article 

    Google Scholar 
    Sunday, J. M. et al. Thermal-safety margins and the necessity of thermoregulatory behavior across latitude and elevation. Proc. Natl. Acad. Sci. 111, 5610–5615 (2014).ADS 
    CAS 
    Article 

    Google Scholar 
    Pansch, C. et al. Heat waves and their significance for a temperate benthic community: A near-natural experimental approach. Glob. Change Biol. 24, 4357–4367 (2018).ADS 
    Article 

    Google Scholar 
    Nguyen, H. M. et al. Stress memory in seagrasses: First insight into the effects of thermal priming and the role of epigenetic modifications. Front. Plant Sci. 11, 494 (2020).Article 

    Google Scholar 
    Xu, Y. et al. Impacts of marine heatwaves on pearl oysters are alleviated following repeated exposure. Mar. Pollut. Bull. 173, 112932 (2021).CAS 
    Article 

    Google Scholar 
    Schram, J. B., Schoenrock, K. M., McClintock, J. B., Amsler, C. D. & Angus, R. A. Multiple stressor effects of near-future elevated seawater temperature and decreased pH on righting and escape behaviors of two common Antarctic gastropods. J. Exp. Mar. Biol. Ecol. 457, 90–96 (2014).Article 

    Google Scholar 
    R Core Team. R: A language and environment for statistical computing. R Found. Stat. Comput. Vienne Austria (2020).Bates, D., Mächler, M., Bolker, B. & Walker, S. Fitting linear mixed-effects models using lme4. J. Stat. Softw. 67, 1–48 (2015).Article 

    Google Scholar 
    Therneau, T. M. coxme: Mixed Effects Cox Models. R package version 2.2-16. (2020).Therneau, T. M. & Grambsch, P. M. The cox model. In Modeling Survival Data: Extending the Cox Model 39–77 (Springer, 2000).Fox, J. & Weisburg, S. An R Companion to Applied Regression. (Sage, 2011).Lenth, R. V. emmeans: Estimated Marginal Means, aka Least-Squares Means. R package version 1.5.3. (2020). More