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    Aversive view memories and risk perception in navigating ants

    Wehner, R., Michel, B. & Antonsen, P. Visual navigation in insects: Coupling of egocentric and geocentric information. J. Exp. Biol. 199(1), 129–140 (1996).CAS 
    PubMed 

    Google Scholar 
    Collett, M., Chittka, L. & Collett, T. S. Spatial memory in insect navigation. Curr. Biol. 23(17), R789–R800 (2013).CAS 
    PubMed 

    Google Scholar 
    Cheng, K., Schultheiss, P., Schwarz, S., Wystrach, A. & Wehner, R. Beginnings of a synthetic approach to desert ant navigation. Behav. Proc. 102, 51–61 (2014).
    Google Scholar 
    Freas, C. A. & Schultheiss, P. How to navigate in different environments and situations: Lessons from ants. Front. Psych. 9, 841 (2018).
    Google Scholar 
    Wehner, R. Desert ant navigation: how miniature brains solve complex tasks. J. Comp. Physiol. A 189(8), 579–588 (2003).ADS 
    CAS 

    Google Scholar 
    Wehner, R. The desert ant’s navigational toolkit: Procedural rather than positional knowledge. Navigation 55(2), 101–114 (2008).
    Google Scholar 
    Wehner, R. Desert Navigator (The Belknap Press of Harvard University Press, 2020).
    Google Scholar 
    Kohler, M. & Wehner, R. Idiosyncratic route-based memories in desert ants, Melophorus bagoti: How do they interact with path-integration vectors?. Neurobiol. Learn. Mem. 83(1), 1–12 (2005).PubMed 

    Google Scholar 
    Müller, M. & Wehner, R. Path integration provides a scaffold for landmark learning in desert ants. Curr. Biol. 20(15), 1368–1371 (2010).PubMed 

    Google Scholar 
    Mangan, M. & Webb, B. Spontaneous formation of multiple routes in individual desert ants (Cataglyphis velox). Behav. Ecol. 23(5), 944–954 (2012).
    Google Scholar 
    Schwarz, S., Wystrach, A. & Cheng, K. Ants’ navigation in an unfamiliar environment is influenced by their experience of a familiar route. Sci. Rep. 7(1), 1–10 (2017).
    Google Scholar 
    Graham, P. & Cheng, K. Ants use the panoramic skyline as a visual cue during navigation. Curr. Biol. 19, R935–R937 (2009).CAS 
    PubMed 

    Google Scholar 
    Wystrach, A., Beugnon, G. & Cheng, K. Landmarks or panoramas: What do navigating ants attend to for guidance?. Front. Zool. 8(1), 21 (2011).PubMed 
    PubMed Central 

    Google Scholar 
    Wehner, R., Meier, C. & Zollikofer, C. The ontogeny of foraging behaviour in desertants, Cataglyphis bicolor. Ecol. Entom. 29, 240–250 (2004).
    Google Scholar 
    Zeil, J. & Fleischmann, P. N. The learning walks of ants (Hymenoptera: Formicidae). Myrmecol. News. 29, 93–110 (2019).
    Google Scholar 
    Schultheiss, P. et al. Crucial role of ultraviolet light for desert ants in determining direction from the terrestrial panorama. Anim. Behav. 115, 19–28 (2016).
    Google Scholar 
    Freas, C. A., Wystrach, A., Narendra, A. & Cheng, K. The view from the trees: Nocturnal bull ants, Myrmecia midas, use the surrounding panorama while descending from trees. Front. Psych. 9, 1–10 (2018).
    Google Scholar 
    Freas, C. A. & Cheng, K. Landmark learning, cue conflict, and outbound view sequence in navigating desert ants. J. Exp. Psych. Anim. Learn. Cogn. 44(4), 409–421 (2018).
    Google Scholar 
    Freas, C. A. & Spetch, M. L. Terrestrial cue learning and retention during the outbound and inbound foraging trip in the desert ant, Cataglyphis bicolor. J. Comp. Physiol. A. 205(2), 177–189 (2019).
    Google Scholar 
    Narendra, A., Si, A., Sulikowski, D. & Cheng, K. Learning, retention and coding of nest-associated visual cues by the Australian desert ant, Myrmecia midas. Behav. Ecol. Sociobiol. 61(10), 1543–1553 (2007).
    Google Scholar 
    Zeil, J. Visual homing: an insect perspective. Curr. Opin. Neurobiol. 22(2), 285–293 (2012).CAS 
    PubMed 

    Google Scholar 
    Zeil, J., Hofmann, M. I. & Chahl, J. S. Catchment areas of panoramic snapshots in outdoor scenes. J. Optic. Soc. Am. A. 20(3), 450 (2003).ADS 

    Google Scholar 
    Wystrach, A., Cheng, K., Sosa, S. & Beugnon, G. Geometry, features, and panoramic views: Ants in rectangular arenas. J. Exp. Psychol. 37(4), 420–435 (2011).
    Google Scholar 
    Baddeley, B., Graham, P., Husbands, P. & Philippides, A. A model of ant route navigation driven by scene familiarity. PLoS Comp. Biol. 8(1), e1002336 (2012).ADS 
    CAS 

    Google Scholar 
    Kodzhabashev, A. & Mangan, M. Route Following Without Scanning In Biomimetic and Biohybrid Systems 199–210 (Springer, 2015).
    Google Scholar 
    Möller, R. A model of ant navigation based on visual prediction. J. Theo. Biol. 305, 118–130 (2012).ADS 
    MathSciNet 
    MATH 

    Google Scholar 
    Le Möel, F. & Wystrach, A. Opponent processes in visual memories: A model of attraction and repulsion in navigating insects’ mushroom bodies. PLoS Comp. Biol. 16, e1007631 (2020).
    Google Scholar 
    Murray, T. et al. The role of attractive and repellent scene memories in ant homing (Myrmecia croslandi). J. Exp. Biol. 223, 21002 (2020).
    Google Scholar 
    Jayatilaka, P., Murray, T., Narendra, A. & Zeil, J. The choreography of learning walks in the Australian jack jumper ant Myrmecia croslandi. J. Exp. Biol. 221(20), 185306 (2018).
    Google Scholar 
    Schwarz, S., Mangan, M., Webb, B. & Wystrach, A. Route-following ants respond to alterations of the view sequence. J. Exp. Biol. 223, 218701 (2020).
    Google Scholar 
    Wystrach, A., Buehlmann, C., Schwarz, S., Cheng, K. & Graham, P. Rapid aversive and memory trace learning during route navigation in desert ants. Curr. Biol. 30(100), 1927–1933 (2020).CAS 
    PubMed 

    Google Scholar 
    Wystrach, A., Philippides, A., Aurejac, A., Cheng, K. & Graham, P. Visual scanning behaviours and their role in the navigation of the Australian desert ant Melophorus bagoti. J. Comp. Physiol. A 200(7), 615–626 (2014).
    Google Scholar 
    Wystrach, A., Schwarz, S., Graham, P. & Cheng, K. Running paths to nowhere: Repetition of routes shows how navigating ants modulate online the weights accorded to cues. Anim. Cogn. 2, 213–222 (2019).
    Google Scholar 
    MacArthur, R. H. & Pianka, E. R. On optimal use of a patchy environment. Am. Nat. 100(916), 603–609 (1966).
    Google Scholar 
    Krebs, J. R. Foraging Theory (Princeton University Press, 1986).
    Google Scholar 
    Kacelnik, A. & Bateson, M. Risky theories: The effects of variance on foraging decisions. Am. Zool. 36(4), 402–434 (1996).
    Google Scholar 
    Kacelnik, A. & Abreu, F. B. Risky choice and Weber’s law. J. Theor. Biol. 194(2), 289–298 (1998).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Fechner, G. T. Elemente der Psychophysik Vol. 2 (Breitkopf u Härtel, 1860).
    Google Scholar 
    Bruce, A. C. & Johnson, J. E. V. Decision-making under risk: Effect of complexity on performance. Psychol. Rep. 79(1), 67–76 (1996).
    Google Scholar 
    Stevens, S. S. & Marks, L. E. Psychophysics: Introduction to its Perceptual, Neural, and Social Prospects (Routledge, 2017).
    Google Scholar 
    Kacelnik, A. & El Mouden, C. Triumphs and trials of the risk paradigm. Anim. Behav. 86(6), 1117–1129 (2013).
    Google Scholar 
    Hübner, C. & Czaczkes, T. J. Risk preference during collective decision making: Ant colonies make risk-indifferent collective choices. Anim. Behav. 132, 21–28 (2017).
    Google Scholar 
    De Agrò, M., Grimwade, D., Bach, R. & Czaczkes, T. J. Irrational risk aversion in an ant. Anim. Cogn. 1, 1–9 (2021).
    Google Scholar 
    Waddington, K. D., Allen, T. & Heinrich, B. Floral preferences of bumblebees (Bombus edwardsii) in relation to intermittent versus continuous rewards. Anim. Behav. 29(3), 779–784 (1981).
    Google Scholar 
    Cartar, R. V. A test of risk-sensitive foraging in wild bumble bees. Ecology 72(3), 888–895 (1991).
    Google Scholar 
    Perez, S. M. & Waddington, K. D. Carpenter bee (Xylocopa micans) risk indifference and a review of nectarivore risk-sensitivity studies. Am. Zool. 36(4), 435–446 (1996).
    Google Scholar 
    Fülöp, A. & Menzel, R. Risk-indifferent foraging behaviour in honeybees. Anim. Behav. 60(5), 657–666 (2000).PubMed 

    Google Scholar 
    Burns, D. D., Sendova-Franks, A. B. & Franks, N. R. The effect of social information on the collective choices of ant colonies. Behav. Ecol. 27(4), 1033–1040 (2016).
    Google Scholar 
    Sasaki, T., Pratt, S. C. & Kacelnik, A. Parallel vs. comparative evaluation of alternative options by colonies and individuals of the ant Temnothorax rugatulus. Sci. Rep. 8(1), 1–8 (2018).
    Google Scholar 
    Sasaki, T., Stott, B. & Pratt, S. C. Rational time investment during collective decision making in Temnothorax ants. Biol. Lett. 15(10), 20190542 (2019).PubMed 
    PubMed Central 

    Google Scholar 
    Freas, C. A., Fleischmann, P. N. & Cheng, K. Experimental ethology of learning in desert ants: Becoming expert navigators. Behav. Proc. 158, 181–191 (2019).
    Google Scholar 
    Le Moël, F. & Wystrach, A. Towards a multi-level understanding in insect navigation. Curr. Opin. Inst. Sci. 42, 110–117 (2020).
    Google Scholar 
    Heinze, S. Visual navigation: Ants lose track without mushroom bodies. Curr. Biol. 30(17), R984–R986 (2020).CAS 
    PubMed 

    Google Scholar 
    Ardin, P., Peng, F., Mangan, M., Lagogiannis, K. & Webb, B. Using an insect mushroom body circuit to encode route memory in complex natural environments. PLOS Comp. Biol. 12(2), e1004683 (2016).ADS 

    Google Scholar 
    Buehlmann, C. et al. Mushroom bodies are required for learned visual navigation, but not for innate visual behavior, in ants. Curr. Biol. 30(17), 3438–3443 (2020).CAS 
    PubMed 

    Google Scholar 
    Kamhi, J. F., Barron, A. B. & Narendra, A. Vertical lobes of the mushroom bodies are essential for view-based navigation in Australian Myrmecia ants. Curr. Biol. 30(17), 3432–3437 (2020).CAS 
    PubMed 

    Google Scholar 
    Heisenberg, M. Mushroom body memoir: From maps to models. Nat. Rev. Neurosci. 4(4), 266–275 (2003).CAS 
    PubMed 

    Google Scholar 
    Webb, B. & Wystrach, A. Neural mechanisms of insect navigation. Curr. Opin. Inst. Sci. 15, 27–39 (2016).
    Google Scholar 
    Habenstein, J., Amini, E., Grübel, K., El Jundi, B. & Rössler, W. The brain of Cataglyphis ants: Neuronal organization and visual projections. J. Comp. Neurol. 528(18), 3479–3506 (2020).PubMed 

    Google Scholar 
    Cohn, R., Morantte, I. & Ruta, V. Coordinated and compartmentalized neuromodulation shapes sensory processing in Drosophila. Cell 163(7), 1742–1755 (2015).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Aso, Y. & Rubin, G. M. Dopaminergic neurons write and update memories with cell-type-specific rules. Elife 5, e16135 (2015).
    Google Scholar 
    Beck, C. D. O., Schroeder, B. & Davis, R. L. Learning performance of normal and mutant Drosophila after repeated conditioning trials with discrete stimuli. J. Neurosci. 20(8), 2944–2953 (2000).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Boto, T. & Ramaswami, M. Learning and memory: Clashing engrams in the fly brain. Curr. Biol. 31(16), R1009–R1011 (2021).CAS 
    PubMed 

    Google Scholar 
    Bennett, J. E. M., Philippides, A. & Nowotny, T. Learning with reinforcement prediction errors in a model of the Drosophila mushroom body. Nat. Commun. 12, 22595 (2021).
    Google Scholar 
    Rescorla, R. A. & Wagner, A. R. A theory of Pavlovian conditioning: Variations in the effectiveness of reinforcement and nonreinforcement. In Classical Conditioning Ii: Current Theory and Research (eds Black, A. & Prokasy, W.) (Appleton-Century-Crofts, 1972).
    Google Scholar  More

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    Drivers of migrant passerine composition at stopover islands in the western Mediterranean

    Study islands and bird dataSystematic ringing in spring on Mediterranean islands has been promoted by the Piccole Isole project since 198826. Standard methods of the project involve ringing between 16th April and 15th May attempting to include the peak of the spring passage of long-distance migrants. Ringing is performed from dawn to nightfall using a constant number of nets within ringing stations placed at stable sites located at representative habitats in each island (Supplementary Table S1). The use of tape-lures is not allowed. We have compiled ringing data for all the Spanish Mediterranean islands that have been applying this methodology, with the exception of Mallorca and Menorca where the ringing stations were located in wetlands and captured a large percentage of local birds (Fig. 2, Table 1). The nine study islands are spread along a south-west to north-east gradient and, with the exception of Columbrets, they are distributed in pairs of similar longitude but different latitudes (Fig. 2). Ringing stations have been operating over a variable number of years (5–27 years), with the maximum number of ringing stations operating at the same time occurring between 2003 and 2010. To include between-year variation on islands that started ringing campaigns more recently we used data from the years 2003–2018.Figure 2Image source: Google Earth. Data SIO, NOAA, US Navy, NGA, GEBCO. Image Landsat/Copernicus.Geographical location of studied islands in the western Mediterranean.Full size imageTable 1 Period of activity of the ringing stations located on each island between the years 1992 and 2018.Full size tableThe ringing period within each spring also varied in most islands, owing to funding or logistic limitations; thus, to reduce the possible effects on migrant composition we only used data from the standard period of the Piccole Isole project and from years that included at least one week of ringing in the fortnight of each month within this interval. This procedure excluded the use of some years for several islands, and the final number of data years for islands ranged between 5 and 16 (Table 1).We used only data for trans-Saharan nocturnal migrant passerines, which form the bulk of species ringed on Mediterranean islands during the standard period. The standard ringing period only covers the tail end of the short-distance migrants’ passage; thus, these species were excluded as their contribution to composition of migrants could vary mainly due to between-year variation in migration phenology. Diurnal migrants, like hirundinids and fringillids, also represent a small fraction of birds ringed and may use different cues to select stopover islands. In addition, some of these species nest in some of the islands studied and birds ringed could include breeding birds. To avoid the distorting effect of species that are captured accidentally in very small numbers, we considered only the species that were ringed in at least five separate years, or on five different islands, which limited the species considered to 35 (Supplementary Table S2). This led to the exclusion of just two species (Ficedula semitorquata with three individuals ringed in two islands and Locustella luscinioides with one individual ringed in Aire island). In addition, we only considered the number of ringed birds, since the proportion of recaptures varies among islands, likely reflecting variation in the duration of stopovers21, which could bias the comparison of the patterns of migrant species composition.Island descriptorsWe obtained two groups of variables describing the characteristics of the study islands (Tables 2, 3): (1) Variables related to geographical location: latitude, longitude, straight distance and minimum distance to the North African coast, minimum distance to the closest large body of land (continent or large island) in any direction and to the closest large body of land situated in a southerly angle between SW and SE. (2) Variables related to the habitat characteristics of the islands: area, maximum altitude and Normalized Difference Vegetation Index (NDVI). We estimated NDVI from Landsat 8 Images taken during the standard ringing period in the years 2015 and 2016. Pixels containing shoreline were excluded and the average NDVI was calculated for the rest of the pixels.Table 2 Variables describing the characteristics of the islands that included the ringing stations studied.Full size tableTable 3 Values of the island descriptors (see Table 2) and two measures of temporal variability of migrant composition in each island: average local contribution of each island to beta diversity (LCBD) and beta diversity for each island (BDTi).Full size tableContinental abundance dataAbundance estimates for western Europe were obtained from the European Red List of Birds27. We used the mean of the minimum and maximum number of pairs estimated for the 27 EU Member States as a measure of continental abundance (Supplementary Table S2).Data analysisAll analyses were done using R 3.6.128. We built a matrix of island-year x species containing the number of individuals of each selected species ringed in the study period in each island and year. Average number of individuals of each species ringed at each island was calculated and was used (log-transformed) as a dependent variable in a linear model with continental abundance (log-transformed), island and their interaction as predictors. This model was simplified using AICc as criteria to identify the best model.To analyze variation of species composition, the matrix of island-year x species was transformed using the chord transformation29 with the function decostand in the vegan package30.Using the function beta.div of the adespatial package31 we calculated beta diversity, including temporal and between-island variability (BDI,T), as the total variance of the aforementioned transformed matrix (BDTotal in29), which varies between 0 and 1 when chord distance is used. Considering that yijk is the chord transformed abundance of the species j in the island i and year k and (overline{{y }_{j}}) is the mean for species j in all islands and years altogether, then:$${SS}_{Total}=sum_{i=1}^{n}sum_{j=1}^{p}{sum_{k=1}^{q}{({y}_{ijk}-{overline{y} }_{j})}^{2}}$$$$BD_{I,T} = , SS_{Total} /left( {N – 1} right)$$where N is the total number of samples. The function beta.div also provides an estimation of contribution of localities (LCBD) and species (SCBD) to beta diversity (Table 3). Yearly LCBD (log transformed because of skewed distribution) of each island were averaged and compared between islands using ANOVA and a post-hoc Tukey test.We partitioned the above sum of squares in several ways. First, we calculated a beta diversity that considered only between-island variability, excluding temporal variability (BDI), by averaging the chord transformed abundances of each species j in each island along study years (({overline{y} }_{ij})) and applying the same procedure, but using the number of studied islands (n):$${SS}_{I}=sum_{i=1}^{n}sum_{j=1}^{p}{{({overline{y} }_{ij}-{overline{y} }_{j})}^{2}}$$$$BD_{I} = SS_{I} /left( {n – 1} right)$$Second, we calculated a beta diversity due to inter-annual variation of migrant composition within islands (BDT) as:$${SS}_{Temp}=sum_{i=1}^{n}sum_{j=1}^{p}{sum_{k=1}^{q}{({y}_{ijk}-{overline{y} }_{ij})}^{2}}$$$$BD_{T} = SS_{Temp} /left( {Y – n} right)$$where Y is the total number of study years and n is the number of studied islands (9). We also calculated a temporal beta diversity for each island i (BDTi) as the sum of squares due to variation within the island divided by the number of the island study years (Yi) minus 1:$${SS}_{Temp,i}=sum_{j=1}^{p}sum_{k=1}^{q}{({y}_{ijk}-{overline{y} }_{ij})}^{2}$$$$BD_{Ti} = SS_{Temp,i} /left( {Y_{i} – 1} right)$$Differences in temporal variability between islands could be due to different predominance of species that are more or less variable between years. To check this, we calculated Spearman’s rank correlation between the percentage of captures of each species in the total ringed on each island and BDTi and LCDB indices, for species present on all islands.We tested for the existence of differences between islands in migrant species composition using Permutational Multivariate Analysis of Variance (PERMANOVA) using the function adonis2 in the vegan package. We performed a multivariate test of homogeneity of variances using the betadisper function (vegan package) with the adjustment for small sample bias, to test if temporal variability in species composition differed between islands. We made post-hoc comparisons between islands with False Discovery Rate (FDR) correction using the function pairwise.perm.manova of the package RVAideMemoire32.To identify gradients in migrant species composition and the island characteristics that were associated with them, we employed Redundancy Analysis using the rda function (vegan package). We used the chord transformed matrix of species x island-year as a response matrix. We used two explanatory matrices, one including variables of geographical location and the other the variables related to habitat characteristics of the islands. We evaluated the relative importance of each group of variables to explain migrant species composition by performing a variation partitioning analysis, using the varpart function (vegan package). For that analysis, we followed the steps and R scripts recommended in33.Variables describing island characteristics were transformed using natural logarithms and collinearity within each group was evaluated with variance inflation factor (VIF)34. All the habitat variables presented VIF  More

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    Atmospheric dryness reduces photosynthesis along a large range of soil water deficits

    Eddy-covariance observationsWe used half-hourly or hourly GPP, air temperature, VPD, SWC and incoming shortwave radiation from the recently released ICOS (Integrated Carbon Observation System)44 and the FLUXNET2015 dataset of energy, water, and carbon fluxes and meteorological data, both of which have undergone a standardized set of quality control and gap filling19. Data were already processed following a consistent and uniform processing pipeline19. This data processing pipeline mainly included: (1) thorough data quality control checks; (2) calculation of a range of friction velocity thresholds; (3) gap-filling of meteorological and flux measurements; (4) partitioning of CO2 fluxes into respiration and photosynthesis components; and (5) calculation of a correction factor for energy fluxes19. All the corrections listed were already applied to the available product19. We used incoming shortwave radiation, temperature, VPD, and SWC that were gap-filled using the marginal distribution method21. The GPP estimates from the night-time partitioning method were used for the analysis (GPP_NT_VUT_REF). SWC was measured as volumetric SWC (percentage) at different depths, varying across sites. We mainly used the surface SWC observations but deeper SWC measurements were also used when available. Data were quality controlled so that only measured and good-quality gap filled data (QC = 0 or 1) were used.Analysis of the extreme summer drought in 2018 in Europe to prove nonlinearityTo analyze the effect of summer drought in 2018 on GPP in Europe, we selected 15 sites with measurements during 2014–2018 from the ICOS dataset, representing the major ecosystems across Europe (Supplementary Table 1). Croplands were excluded due to the effect of management on the seasonal timing of ecosystem fluxes, both from crop rotation that change from year to year and from the variable timing of planting and harvesting. In croplands, the changes of GPP anomalies across different growing season could be mainly depend on crop varieties and management activities. Information of crop varieties, growing times yearly and other management data for each cropland site should be collected in future in order to fully consider and disentangle the impacts of SWC and VPD on its photosynthesis. Wetland sites were also removed because they are influenced by upstream organic matter and nutrient input, as well as fluctuating water tables. Daytime half-hourly data (7 am to 19 pm) were aggregated to daily values. At each site, the relative changes ((triangle {{{{{rm{X}}}}}})) of summer (June–July–August) GPP, SWC and VPD during 2014–2018 refer to the summer average of 2014–2018 were calculated for each year. For example, the calculation of the relative change in 2018 is shown in Eq. (1):$$triangle {{{{{rm{X}}}}}}=frac{{X}_{2018}-,{X}_{{average};{of};2014-2018}}{{X}_{{average};{of};2014-2018}}times 100 %$$
    (1)
    where X2018 is the mean of the daily values of (X) (GPP, SWC, or VPD) during the summer of 2018, and Xaverage of 2014–2018 is the mean of the daily values of (X) over all the summers of the 2014–2018 period. The average (triangle {{{{{rm{X}}}}}}) across a certain number of sites at each bin were used for the results in Fig. 1a.Daily time series of GPP, SWC and VPD during summer for each site were normalized (z-scores) to derive the standardized sensitivity of GPP to SWC and VPD. For each variable, the mean value across the summer of 2014–2018 was subtracted for each day at each site and then normalized by its standard deviation. At each site, we used a multiple linear regression (Eq. 2) to estimate daily GPP anomalies sensitivities to SWC and VPD anomalies across 2014–2018 and 2014–2017, respectively:$${GPP}={beta }_{1},{SWC}+{beta }_{2},{VPD}+{beta }_{3},{SWC},times {VPD}+{beta }_{4},{T}_{a}+{beta }_{5}{RAD}+b+varepsilon$$
    (2)
    where ({beta }_{i}) is the standardized sensitivity of GPP to each variable; ({T}_{a}) represents the air temperature; ({RAD}) represents the incoming shortwave radiation;(,b) represents the intercept; and (varepsilon) is the random error term. We compared estimated sensitivities with and without 2018 data to quantify the impacts of extreme drought in 2018 on GPP sensitivity to SWC (Fig. 1d) and VPD (Fig. 1e). The slope was calculated at each site and then the distribution of slopes across sites were plotted in Fig. 1d, e.Global analysis of the sensitivities of GPP to SWC and VPDFor the global analysis, instead of summer, we focused on the growing season and days when the SWC and VPD effects were most likely to control ecosystem fluxes and screen out days when other meteorological drivers were likely to have a larger influence on fluxes. Following previous studies5,8,45, for each site, we restrict our analyses to the days in which: (i) the daily average temperature >15 °C; (ii) sufficient evaporative demand existed to drive water fluxes, constrained as daily average VPD  > 0.5 kPa; (iii) high solar radiation, constrained as daily average incoming shortwave radiation >250 Wm−2.By combining ICOS and FLUXNET2015 data, at the global scale, we evaluated 67 sites with at least 300 days observations over the growing seasons for the years available (Supplementary Table 2). We excluded cropland and wetland sites for the above-mentioned reasons. These 67 sites were used to calculate the relative effects of low SWC and high VPD on GPP following the approach of ref. 5 (see below sections). For 8 sites, the ANN results failed performance criteria (the correlation between predicted GPP and observed GPP is {{VPD}}_{0}\ {beta }_{0},,{VPD}le {{VPD}}_{0}end{array}right.$$
    (7)
    where β0 and k are fitted parameters and VPD0 is 1 kPa48. Following Luo and Keenan48, we applied this method to a short time window (2–14 days) of Fc depending on the availability of flux measurements and assumed that every day in the same time window has the same daily Amax. We retrieved the daily Amax by implementing Eqs. (6) and (7) using the REddyProc R package (https://github.com/bgctw/REddyProc)20.Vcmax represents the activity of the primary carboxylating enzyme ribulose 1,5-bisphosphate carboxylase–oxygenase (Rubisco) as measured under light-saturated conditions. To evaluate the responses of Vcmax to SWC and VPD, we first calculated the daily internal leaf CO2 partial pressure (ci) in the middle of the day (11:00–14:00) via Fick’s Law (Eq. 8), excluding periods with low incoming shortwave radiation (0.7 at most sites. During the training process, weight and bias values were optimized using the Levenberg–Marquardt optimization58,59. The maximum number of epochs to train is 1000. An example to demonstrate the ANN training at one site was shown in Supplementary Fig. 3.At each site, ANN was run and sensitivities were calculated for all data within each SWC and VPD bin and the median value was used. For each of the five trained ANNs, one of the predictor variables was perturbed by one standard deviation (a value of 1 due to the initial input data normalization), and GPP was predicted again using the existing ANN with the predictors including the perturbed variable; this process was repeated for each predictor variable. The predicted values of GPP obtained with and without perturbation were then compared to determine the sensitivity values. The sample equation showing the calculation of the GPP sensitivity to VPD is shown in Eq. (10).$${{{{{{rm{Sensitivity}}}}}}}_{{VPD}}={median}left(,frac{{{GPP}}_{left({ANN};{VPD}+{stdev}left({VPD}right)right)}-{{GPP}}_{left({ANN};{all};{VAR}right)}}{{stdev}left({VPD}right)}right)$$
    (10)
    We repeated the ANN and sensitivity analyses five times and the median of these were used at each site. Across all sites, significances of the sensitivities for each bin were tested using t-tests (p  More

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    Belowground mechanism reveals climate change impacts on invasive clonal plant establishment

    Mack, R. N. et al. Biotic invasions: causes, epidemiology, global consequences, and control. Ecol. Appl. 10, 689–710. https://doi.org/10.1890/1051-0761 (2000).Article 

    Google Scholar 
    Dukes, J. S. & Mooney, H. A. Disruption of ecosystem processes in western North America by invasive species. Rev. Chil. Hist. Nat. 77, 411–437 (2004).Article 

    Google Scholar 
    Vitousek, P. M. Biological invasions and ecosystem processes: towards an integration of population biology and ecosystem studies. Oikos 57, 7–13. https://doi.org/10.2307/3565731 (1990).Article 

    Google Scholar 
    Richardson, D. M. et al. Naturalization and invasion of alien plants: concepts and definitions. Diver. Distrib. 6, 93–107 (2000).Article 

    Google Scholar 
    Theoharides, K. A. & Dukes, J. S. Plant invasion across space and time: factors affecting nonindigenous species success during four stages of invasion. New Phytol. 176, 256–273 (2007).Article 

    Google Scholar 
    Pyšek, P. et al. Naturalization of central European plants in North America: species traits, habitats, propagule pressure, residence time. Ecology 96, 762–774. https://doi.org/10.1890/14-1005.1 (2015).Article 
    PubMed 

    Google Scholar 
    Estrada, J. A., Wilson, C. H. & Flory, S. L. Clonal integration enhances performance of an invasive grass. Oikos https://doi.org/10.1111/oik.07016 (2020).Article 

    Google Scholar 
    Otfinowski, R. & Kenkel, N. C. Clonal integration facilitates the proliferation of smooth brome clones invading northern fescue prairies. Plant Ecol. 199, 235–242. https://doi.org/10.1007/s11258-008-9428-8 (2008).Article 

    Google Scholar 
    Pyšek, P. & Richardson, D. M. in Biological Invasions (ed N. Nentwig) pp. 97–125 (Springer, New York, 2007).Klimešová, J. & Klimeš, L. Clonal growth diversity and bud banks of plants in the Czech flora: an evaluation using the CLO-PLA3 database. Preslia 80, 255–275 (2008).
    Google Scholar 
    Klimešová, J. et al. Handbook of standardized protocols for collecting plant modularity traits. Persp. Plant Ecol. https://doi.org/10.1016/j.ppees.2019.125485 (2019).Article 

    Google Scholar 
    Wang, Y. J. et al. Invasive alien plants benefit more from clonal integration in heterogeneous environments than natives. New Phytol. 216, 1072–1078 (2017).Article 

    Google Scholar 
    Klimešová, J. in Encyclopedia of Invasive Introduced Species (eds D. Simberloff & M. Reimanek) pp. 678–679 (University of California Press, California, 2011).Ott, J. P., Klimešová, J. & Hartnett, D. C. The ecology and significance of below-ground bud banks in plants. Ann. Bot. Lond. 123, 1099–1118. https://doi.org/10.1093/aob/mcz051 (2019).Article 

    Google Scholar 
    Sanchez, J. M., Sanchez, C. & Navarro, L. Can asexual reproduction by plant fragments help to understand the invasion of the NW Iberian coast by Spartina patens? Flora 257, 151410. https://doi.org/10.1016/j.flora.2019.05.009 (2019).Speek, T. A. A. et al. Factors relating to regional and local success of exotic plant species in their new range. Diver. Distrib. 17, 542–551 (2011).Article 

    Google Scholar 
    Wang, J. Y. et al. A meta-analysis of effects of physiological integration in clonal plants under homogeneous vs heterogeneous environments. Funct. Ecol. https://doi.org/10.1111/1365-2435.13732 (2020).Article 

    Google Scholar 
    Maurer, D. A. & Zedler, J. B. Differential invasion of a wetland grass explained by tests of nutrients and light availability on establishment and clonal growth. Oecologia 131, 279–288. https://doi.org/10.1007/s00442-002-0886-8 (2002).ADS 
    Article 
    PubMed 

    Google Scholar 
    Mueller, I. M. & Weaver, J. E. Relative drought resistance of seedlings of dominant prairie grasses. Ecology 23, 387–398 (1942).Article 

    Google Scholar 
    Vetter, V. M. S. et al. Invasion windows for a global legume invader are revealed after joint examination of abiotic and biotic filters. Plant Biol. 21, 832–843. https://doi.org/10.1111/plb.12987 (2019).CAS 
    Article 
    PubMed 

    Google Scholar 
    Ibanez, I. et al. Integrated assessment of biological invasions. Ecol. Appl. 24, 25–37. https://doi.org/10.1890/13-0776.1 (2014).Article 
    PubMed 

    Google Scholar 
    Diez, J. M. et al. Will extreme climatic events facilitate biological invasions?. Front. Ecol. Environ. 10, 249–257. https://doi.org/10.1890/110137 (2012).Article 

    Google Scholar 
    Davis, M. A., Grime, J. P. & Thompson, K. Fluctuating resources in plant communities: a general theory of invasibility. J. Ecol. 88, 528–534. https://doi.org/10.1046/j.1365-2745.2000.00473.x (2000).Article 

    Google Scholar 
    Li, W. & Stevens, M. H. H. Fluctuating resource availability increases invasibility in microbial microcosms. Oikos 121, 435–441. https://doi.org/10.1111/j.1600-0706.2011.19762.x (2012).Article 

    Google Scholar 
    Koerner, S. E. et al. Invasibility of a mesic grassland depends on the time-scale of fluctuating resources. J. Ecol. 103, 1538–1546. https://doi.org/10.1111/1365-2745.12479 (2015).Article 

    Google Scholar 
    Hendrickson, J. R. & Lund, C. Plant community and target species affect responses to restoration strategies. Rangel. Ecol. Manag. 63, 435–442 (2010).Article 

    Google Scholar 
    Bennett, J., Smart, A. & Perkins, L. Using phenological niche separation to improve management in a Northern Glaciated Plains grassland. Restor. Ecol. 27, 745–749. https://doi.org/10.1111/rec.12932 (2019).Article 

    Google Scholar 
    Jordan, N. R., Larson, D. L. & Huerd, S. C. Soil modification by invasive plants: effects on native and invasive species of mixed-grass prairies. Biol. Invas. 10, 177–190. https://doi.org/10.1007/s10530-007-9121-1 (2008).Article 

    Google Scholar 
    Piper, C. L., Lamb, E. G. & Siciliano, S. D. Smooth brome changes gross soil nitrogen cycling processes during invasion of a rough fescue grassland. Plant Ecol. 216, 235–246. https://doi.org/10.1007/s11258-014-0431-y (2015).Article 

    Google Scholar 
    Stotz, G. C., Gianoli, E. & Cahill, J. F. Biotic homogenization within and across eight widely distributed grasslands following invasion by Bromus inermis. Ecology https://doi.org/10.1002/ecy.2717 (2019).Article 
    PubMed 

    Google Scholar 
    Dillemuth, F. P., Rietschier, E. A. & Cronin, J. T. Patch dynamics of a native grass in relation to the spread of invasive smooth brome (Bromus inermis). Biol. Invas. 11, 1381–1391. https://doi.org/10.1007/s10530-008-9346-7 (2009).Article 

    Google Scholar 
    Trammell, M. A. & Butler, J. L. Effects of exotic plants on native ungulate use of habitat. J. Wildlife Manag. 59, 808–816. https://doi.org/10.2307/3801961 (1995).Article 

    Google Scholar 
    Gibson, D. J. Grasses and Grassland Ecology (Oxford Univ. Press, 2009).
    Google Scholar 
    Knapp, A. K. & Smith, M. D. Variation among biomes in temporal dynamics of aboveground primary production. Science 291, 481–484. https://doi.org/10.1126/science.291.5503.481 (2001).ADS 
    CAS 
    Article 
    PubMed 

    Google Scholar 
    Easterling, D. R. et al. Precipitation change in the United States. pp. 207–230 (Washington, D.C. USA, 2017).Gutschick, V. P. & BassiriRad, H. Extreme events as shaping physiology, ecology, and evolution of plants: toward a unified definition and evaluation of their consequences. New Phytol. 160, 21–42. https://doi.org/10.1046/j.1469-8137.2003.00866.x (2003).Article 
    PubMed 

    Google Scholar 
    Briske, D. D. in Grazing management: An ecological perspective (eds R.K. Heitschmidt & J.W. Stuth) pp. 85–108 (Timber Press, Inc., 1991).Liu, F., Liu, J. & Dong, M. Ecological consequences of clonal integration in plants. Front. Plant Sci. 217, 277–287 (2016).
    Google Scholar 
    Hoover, D. L., Knapp, A. K. & Smith, M. D. Resistance and resilience of a grassland ecosystem to climate extremes. Ecology 95, 2646–2656. https://doi.org/10.1890/13-2186.1 (2014).Article 

    Google Scholar 
    VanderWeide, B. L., Hartnett, D. C. & Carter, D. L. Belowground bud banks of tallgrass prairie are insensitive to multi-year, growing-season drought. Ecosphere. https://doi.org/10.1890/Es14-00058.1 (2014).Article 

    Google Scholar 
    VanderWeide, B. L. & Hartnett, D. C. Belowground bud bank response to grazing under severe, short-term drought. Oecologia 178, 795–806. https://doi.org/10.1007/s00442-015-3249-y (2015).ADS 
    Article 
    PubMed 

    Google Scholar 
    Ott, J. P., Butler, J. L., Rong, Y. P. & Xu, L. Greater bud outgrowth of Bromus inermis than Pascopyrum smithii under multiple environmental conditions. J. Plant Ecol. 10, 518–527. https://doi.org/10.1093/jpe/rtw045 (2017).Article 

    Google Scholar 
    Oesterheld, M., Loreti, J., Semmartin, M. & Sala, O. E. Inter-annual variation in primary production of a semi-arid grassland related to previous-year production. J. Veg. Sci. 12, 137–142. https://doi.org/10.1111/j.1654-1103.2001.tb02624.x (2001).Article 

    Google Scholar 
    Ott, J. P. & Hartnett, D. C. Bud bank dynamics and clonal growth strategy in the rhizomatous grass, Pascopyrum smithii. Plant Ecol. 216, 395–405. https://doi.org/10.1007/s11258-014-0444-6 (2015).Article 

    Google Scholar 
    Carlsson, B. A. & Callaghan, T. V. Programmed tiller differentiation, intraclonal density regulation and nutrient dynamics in Carex bigelowii. Oikos 58, 219–230. https://doi.org/10.2307/3545429 (1990).Article 

    Google Scholar 
    Ye, X. H., Yu, F. H. & Dong, M. A trade-off between guerrilla and phalanx growth forms in Leymus secalinus under different nutrient supplies. Ann. Bot. Lond. 98, 187–191. https://doi.org/10.1093/aob/mcl086 (2006).Article 

    Google Scholar 
    Dibbern, J. C. Vegetative responses of Bromus inermis to certain variations in environment. Bot. Gazette 109, 44–58 (1947).Article 

    Google Scholar 
    Dong, X., Patton, J., Wang, G., Nyren, P. & Peterson, P. Effect of drought on biomass allocation in two invasive and two native grass species dominating the mixed-grass prairie. Grass Forage Sci. 69, 160–166. https://doi.org/10.1111/gfs.12020 (2014).Article 

    Google Scholar 
    Saeidnia, F., Majidi, M. M., Mirlohi, A. & Soltan, S. Physiological and tolerance indices useful for drought tolerance selection in smooth bromegrass. Crop Sci. 57, 282–289. https://doi.org/10.2135/cropsci2016.07.0636 (2017).CAS 
    Article 

    Google Scholar 
    Vinton, M. A. & Hartnett, D. C. Effects of bison grazing on Andropogon gerardii and Panicum virgatum in burned and unbruned tallgrass prairie. Oecologia 90, 374–382. https://doi.org/10.1007/bf00317694 (1992).ADS 
    CAS 
    Article 
    PubMed 

    Google Scholar 
    Eneboe, E. J., Sowell, B. F., Heitschmidt, R. K., Karl, M. G. & Haferkamp, M. R. Drought and grazing: IV. Blue grama and western wheatgrass. J. Range Manag. 55, 197–203. https://doi.org/10.2307/4003357 (2002).Article 

    Google Scholar 
    Broadbent, T. S., Bork, E. W. & Willms, W. D. Divergent effects of defoliation intensity and frequency on tiller growth and production dynamics of Pascopyrum smithii and Hesperostipa comata. Grass Forage Sci. 73, 532–543. https://doi.org/10.1111/gfs.12318 (2018).Article 

    Google Scholar 
    Donkor, N. T., Bork, E. W. & Hudson, R. J. Bromus-Poa response to defoliation intensity and frequency under three soil moisture levels. Can. J. Plant Sci. 82, 365–370. https://doi.org/10.4141/p01-040 (2002).Article 

    Google Scholar 
    Reynolds, J. H. & Smith, D. Trend of carbohydrate reserves in alfalfa, smooth bromegrass, and timothy grown under various cutting schedules. Crop Sci. 2, 333–336 (1962).CAS 
    Article 

    Google Scholar 
    Lamp, H. F. Reproductive activity in Bromus inermis in relation to phases of tiller development. Bot. Gazette 113, 413–438 (1952).Article 

    Google Scholar 
    Paulsen, G. M. & Smith, D. Organic reserves, axillary bud activity, and herbage yields of smooth bromegrass as influenced by time of cutting, nitrogen fertilization, and shading. Crop Sci. 9, 529–534 (1969).Article 

    Google Scholar 
    Ott, J. P. & Hartnett, D. C. Contrasting bud bank dynamics of two co-occurring grasses in tallgrass prairie: implications for grassland dynamics. Plant Ecol. 213, 1437–1448. https://doi.org/10.1007/s11258-012-0102-9 (2012).Article 

    Google Scholar 
    Busso, C. A., Mueller, R. J. & Richards, J. H. Effects of drought and defoliation on bud viability in 2 caespitose grasses. Ann. Bot. Lond. 63, 477–485. https://doi.org/10.1093/oxfordjournals.aob.a087768 (1989).Article 

    Google Scholar 
    Tuomi, J., Nilsson, P. & Astrom, M. Plant compensatory responses-bud dormancy as an adaptation to herbivory. Ecology 75, 1429–1436. https://doi.org/10.2307/1937466 (1994).Article 

    Google Scholar 
    US Department of Agriculture. The PLANTS Database, (2006).Gong, K. et al. Analysis on the distribution, breeding and utilization of Bromus inermis germplasm resource in China. Heilongjiang Anim. Sci. Vet. Med. 21, 33–36 (2019).
    Google Scholar 
    Coupland, R. T. & Johnson, R. E. Rooting characteristics of native grassland species in Saskatchewan. J. Ecol. 53, 475–507 (1965).Article 

    Google Scholar 
    Gist, G. R. & Smith, R. M. Root development of several common forage grasses to a depth of eighteen inches. Agron. J. 1036–1042 (1948).Okamoto, H., Ishii, K. & An, P. Effects of soil moisture deficit and subsequent watering on the growth of four temperate grasses. Grassl. Sci. 57, 192–197. https://doi.org/10.1111/j.1744-697X.2011.00232.x (2011).Article 

    Google Scholar 
    Morrow, L. A. & Power, J. F. Effect of soil temperature on development of perennial forage grasses. Agron. J. 71, 7–10 (1979).Article 

    Google Scholar 
    Duell, E. B., Wilson, G. W. T. & Hickman, K. R. Above- and below-ground responses of native and invasive prairie grasses to future climate scenarios. Botany 94, 471–479. https://doi.org/10.1139/cjb-2015-0238 (2016).Article 

    Google Scholar 
    Duell, E. B., Londe, D. W., Hickman, K. R., Greer, M. J. & Wilson, G. W. T. Superior performance of invasive grasses over native counterparts will remain problematic under warmer and drier conditions. Plant Ecol. 222, 993–1006 (2021).Article 

    Google Scholar 
    Cully, A. C., Cully, J. F. & Hiebert, R. D. Invasion of exotic plant species in tallgrass prairie fragments. Conser. Biol. 17, 990–998. https://doi.org/10.1046/j.1523-1739.2003.02107.x (2003).Article 

    Google Scholar 
    DeKeyser, E. S., Meehan, M., Clambey, G. & Krabbenhoft, K. Cool season invasive grasses in northern great plains natural areas. Nat. Areas J. 33, 81–90. https://doi.org/10.3375/043.033.0110 (2013).Article 

    Google Scholar 
    Grant, T. A., Shaffer, T. L. & Flanders, B. Resiliency of native prairies to invasion by kentucky bluegrass, smooth brome, and woody vegetation. Rangeland Ecol. Manag. 73, 321–328. https://doi.org/10.1016/j.rama.2019.10.013 (2020).Article 

    Google Scholar 
    Otfinowski, R., Kenkel, N. C. & Catling, P. M. The biology of Canadian weeds. 134. Bromus inermis Leyss. Can. J. Plant Sci. 87, 183–198. https://doi.org/10.4141/p06-071 (2007).Article 

    Google Scholar 
    Moore, K. J. et al. Describing and quantifying growth stages of perennial forage grasses. Agron. J. 83, 1073–1077 (1991).Article 

    Google Scholar 
    SAS Institute. SAS 9.4. (SAS Institute Inc, 2017). More

  • in

    Severe conservation risks of roads on apex predators

    Laurance, W. F. et al. A global strategy for road building. Nature 513, 229–232 (2014).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Weng, L. et al. Mineral industries, growth corridors and agricultural development in Africa. Glob. Food Sec. 2, 195–202 (2013).
    Google Scholar 
    Laurance, W. F., Goosem, M. & Laurance, S. G. W. Impacts of roads and linear clearings on tropical forests. Trends Ecol. Evol. 24, 659–669 (2009).PubMed 

    Google Scholar 
    Trombulak, S. C. & Frissell, C. A. Review of ecological effects of roads on terrestrial and aquatic communities. Conserv. Biol. 14, 18–30 (2000).
    Google Scholar 
    van der Ree, R., Smith, D. J. & Grilo, C. The ecological effects of linear infrastructure and traffic. in Handbook of road ecology 1–9 (John Wiley and Sons, Ltd., 2015). https://doi.org/10.1002/9781118568170.ch1.Grilo, C., Smith, D. J. & Klar, N. Carnivores: Struggling for survival in roaded landscapes. in Handbook of road ecology 300–312 (John Wiley and Sons, Ltd., 2015). doi:https://doi.org/10.1002/9781118568170.ch35.Wallach, A. D., Izhaki, I., Toms, J. D., Ripple, W. J. & Shanas, U. What is an apex predator?. Oikos 124, 1453–1461 (2015).
    Google Scholar 
    Ripple, W. J. et al. Status and ecological effects of the world’s largest carnivores. Science 343, (2014).Estes, J. A. et al. Trophic downgrading of planet earth. Science 333, 301–306 (2011).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Stolton, S. & Dudley, N. The New Lion Economy. Unlocking the value of lions and their landscapes. http://lionrecoveryfund.org/newlioneconomy (2019).Meijer, J. R., Huijbregts, M. A. J., Schotten, K. C. G. J. & Schipper, A. M. Global patterns of current and future road infrastructure. Environ. Res. Lett. 13, 064006 (2018). Data is available at http://www.globio.infoAscensão, F. et al. Environmental challenges for the belt and road initiative. Nat. Sustain. 1, 206–209 (2018).
    Google Scholar 
    Dulac, J. Global land transport infrastructure requirements – Estimating road and railway infrastructure capacity and costs to 2050. (International Energy Agency, 2013).Laurance, W. F. et al. Reducing the global environmental impacts of rapid infrastructure expansion. Curr. Biol. 25, R259–R262 (2015).CAS 
    PubMed 

    Google Scholar 
    Vilela, T. et al. A better Amazon road network for people and the environment. Proc. Natl. Acad. Sci. 117, 7095–7102 (2020).ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Laurance, W. F., Sloan, S., Weng, L. & Sayer, J. A. Estimating the environmental costs of Africa’s massive “development corridors”. Curr. Biol. 25, 3202–3208 (2015).CAS 
    PubMed 

    Google Scholar 
    Sharma, R., Rimal, B., Stork, N., Baral, H. & Dhakal, M. Spatial assessment of the potential impact of infrastructure development on biodiversity conservation in lowland Nepal. ISPRS Int. J. Geo Inf. 7, 365 (2018).
    Google Scholar 
    IUCN. The IUCN red list of threatened species. Version 2018-1. http://www.iucnredlist.org (2018).Garrote, G. et al. Prediction of Iberian lynx road-mortality in southern Spain: A new approach using the MaxEnt algorithm. Anim. Biodivers. Conserv. 41, 217–225 (2018).
    Google Scholar 
    Parchizadeh, J. et al. Roads threaten Asiatic cheetahs in Iran. Curr. Biol. 28, R1141–R1142 (2018).CAS 
    PubMed 

    Google Scholar 
    Crooks, K. R., Burdett, C. L., Theobald, D. M., Rondinini, C. & Boitani, L. Global patterns of fragmentation and connectivity of mammalian carnivore habitat. Philos. Trans. R. Soc. B Biol. Sci. 366, 2642–2651 (2011).
    Google Scholar 
    Kattan, G. et al. Range fragmentation in the spectacled bear Tremarctos ornatus in the northern Andes. Oryx 38, 155–163 (2004).
    Google Scholar 
    Valeix, M., Loveridge, A. J. & Macdonald, D. W. Influence of prey dispersion on territory and group size of African lions: A test of the resource dispersion hypothesis. Ecology 93, 2490–2496 (2012).PubMed 

    Google Scholar 
    Holderegger, R. & Giulio, M. D. The genetic effects of roads: a review of empirical evidence. Basic Appl. Ecol. 11, 522–531 (2010).
    Google Scholar 
    Riley, S. P. D. et al. A southern California freeway is a physical and social barrier to gene flow in carnivores. Mol. Ecol. 15, 1733–1741 (2006).CAS 
    PubMed 

    Google Scholar 
    Proctor, M. F., McLellan, B. N., Strobeck, C. & Barclay, R. M. R. Genetic analysis reveals demographic fragmentation of grizzly bears yielding vulnerably small populations. Proc. R. Soc. B Biol. Sci. 272, 2409–2416 (2005).
    Google Scholar 
    Riley, S. P. D. et al. Individual behaviors dominate the dynamics of an urban mountain lion population isolated by roads. Curr. Biol. 24, 1989–1994 (2014).CAS 
    PubMed 

    Google Scholar 
    Janečka, J. E. et al. Reduced genetic diversity and isolation of remnant ocelot populations occupying a severely fragmented landscape in southern Texas. Anim. Conserv. 14, 608–619 (2011).
    Google Scholar 
    Thatte, P., Joshi, A., Vaidyanathan, S., Landguth, E. & Ramakrishnan, U. Maintaining tiger connectivity and minimizing extinction into the next century: Insights from landscape genetics and spatially-explicit simulations. Biol. Cons. 218, 181–191 (2018).
    Google Scholar 
    Vaeokhaw, S. et al. Effects of a highway on the genetic diversity of Asiatic black bears. Ursus 2020, 1–15 (2020).
    Google Scholar 
    Benı́tez-López, A. et al. The impact of hunting on tropical mammal and bird populations. Science 356, 180–183 (2017).ADS 
    PubMed 

    Google Scholar 
    Clements, G. R. et al. Where and how are roads endangering mammals in Southeast Asia’s forests?. PLoS ONE 9, e115376 (2014).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Sharma, K., Wright, B., Joseph, T. & Desai, N. Tiger poaching and trafficking in India: Estimating rates of occurrence and detection over four decades. Biol. Cons. 179, 33–39 (2014).
    Google Scholar 
    Espinosa, S., Branch, L. C. & Cueva, R. Road development and the geography of hunting by an Amazonian indigenous group: Consequences for wildlife conservation. PLoS ONE 9, e114916 (2014).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Wato, Y. A., Wahungu, G. M. & Okello, M. M. Correlates of wildlife snaring patterns in Tsavo west national park Kenya. Biol. Conserv. 132, 500–509 (2006).
    Google Scholar 
    Watson, F., Becker, M. S., McRobb, R. & Kanyembo, B. Spatial patterns of wire-snare poaching: Implications for community conservation in buffer zones around national parks. Biol. Cons. 168, 1–9 (2013).
    Google Scholar 
    Henschel, P., Hunter, L. T. B., Coad, L., Abernethy, K. A. & Mühlenberg, M. Leopard prey choice in the Congo Basin rainforest suggests exploitative competition with human bushmeat hunters. J. Zool. 285, 11–20 (2011).
    Google Scholar 
    Espinosa, S., Celis, G. & Branch, L. C. When roads appear jaguars decline: Increased access to an Amazonian wilderness area reduces potential for jaguar conservation. PLoS ONE 13, e0189740 (2018).PubMed 
    PubMed Central 

    Google Scholar 
    Parsons, M. A., Newsome, T. M. & Young, J. K. The consequences of predators without prey. Front. Ecol. Environ. https://doi.org/10.1002/fee.2419 (2021).Article 

    Google Scholar 
    Caro, T., Dobson, A., Marshall, A. J. & Peres, C. A. Compromise solutions between conservation and road building in the tropics. Curr. Biol. 24, R722–R725 (2014).CAS 
    PubMed 

    Google Scholar 
    Grilo, C. et al. Conservation threats from roadkill in the global road network. Glob. Ecol. Biogeogr. 30, 2200–2210 (2021).
    Google Scholar 
    Carter, N., Killion, A., Easter, T., Brandt, J. & Ford, A. Road development in Asia: assessing the range-wide risks to tigers. Sci. Adv. 6(18), eaaz9619 (2020).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Ceia-Hasse, A., Borda-de-Água, L., Grilo, C. & Pereira, H. M. Global exposure of carnivores to roads. Glob. Ecol. Biogeogr. 26, 592–600 (2017).
    Google Scholar 
    Gaveau, D. L. A. et al. Four decades of forest persistence, clearance and logging on Borneo. PLoS ONE 9, e101654 (2014).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Gerber, B. D., Karpanty, S. M. & Randrianantenaina, J. The impact of forest logging and fragmentation on carnivore species composition, density and occupancy in Madagascar’s rainforests. Oryx 46, 414–422 (2012).
    Google Scholar 
    Cullen, L. et al. Implications of fine-grained habitat fragmentation and road mortality for jaguar conservation in the Atlantic forest, Brazil. PLoS ONE 11, e0167372 (2016).PubMed 
    PubMed Central 

    Google Scholar 
    Kirby, K. R. et al. The future of deforestation in the Brazilian Amazon. Futures 38, 432–453 (2006).
    Google Scholar 
    UNEP-WCMC & IUCN. Protected planet: The world database on protected areas. http://www.protectedplanet.net (2019).de la Torre, J. A., Gonzalez-Maya, J. F., Zarza, H., Ceballos, G. & Medellin, R. A. The jaguars spots are darker than they appear: assessing the global conservation status of the jaguar Panthera onca. Oryx 52, 300–315 (2017).
    Google Scholar 
    Coelho, L., Romero, D., Queirolo, D. & Guerrero, J. C. Understanding factors affecting the distribution of the maned wolf (Chrysocyon brachyurus) in South America: spatial dynamics and environmental drivers. Mamm. Biol. 92, 54–61 (2018).
    Google Scholar 
    Fearnside, P. M. Brazil’s Cuiabá- Santarém (BR-163) highway: The environmental cost of paving a soybean corridor through the Amazon. Environ. Manage. 39, 601–614 (2007).ADS 
    PubMed 

    Google Scholar 
    Vetter, D., Hansbauer, M. M., Végvári, Z. & Storch, I. Predictors of forest fragmentation sensitivity in neotropical vertebrates: A quantitative review. Ecography 34, 1–8 (2011).
    Google Scholar 
    Morcatty, T. Q. et al. Illegal trade in wild cats and its link to Chinese-led development in central and South America. Conserv. Biol. 34, 1525–1535 (2020).PubMed 

    Google Scholar 
    Ramsar. Ngiri-Tumba-Maindombe. Ramsar Sites Information Service https://rsis.ramsar.org/ris/1784 (2017).Dobson, A. P. et al. Road will ruin Serengeti. Nature 467, 272–273 (2010).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Riggio, J. et al. The size of savannah Africa: A lion’s (Panthera leo) view. Biodivers. Conserv. 22, 17–35 (2012).
    Google Scholar 
    Government of Nepal. Economic survey 2019/20. (Ministry of Finance, 2020).Jnawali, S. R. et al. The status of Nepal mammals: The national red list series. (Department of National Parks and Wildlife Conservation, 2011).Joshi, A. R. Nepal court blocks road construction in rhino stronghold of Chitwan Park. https://news.mongabay.com/2019/02/nepal-court-blocks-road-construction-in-rhino-stronghold-of-chitwan-park/ (2019).Government of Nepal. Conservation Landscapes of Nepal. (Ministry of Forest and Soil Conservation, 2016).Poudel, A. et al. Biological and socio-economic study in corridors of Terai Arc Landscape, Nepal. (Center for Policy Analysis; Development, 2013).Arlidge, W. N. S. et al. A Global Mitigation Hierarchy for Nature Conservation. Bioscience 68, 336–347 (2018).PubMed 
    PubMed Central 

    Google Scholar 
    Ekstrom, J., Bennun, L. & Mitchell, R. A Cross-Sector Guide for Implementing the Mitigation Hierarchy. (The Biodiversity Consultancy, 2015).Malo, J. E., Suárez, F. & Díez, A. Can we mitigate animal-vehicle accidents using predictive models?. J. Appl. Ecol. 41, 701–710 (2004).
    Google Scholar 
    R Core Team. R: A language and environment for statistical computing (Version 4.0.3). https://www.R-project.org/ (R Foundation for Statistical Computing, 2020).Tucker, M. A., Ord, T. J. & Rogers, T. L. Evolutionary predictors of mammalian home range size: body mass, diet and the environment. Glob. Ecol. Biogeogr. 23, 1105–1114 (2014).
    Google Scholar 
    Santini, L., Boitani, L., Maiorano, L. & Rondinini, C. Effectiveness of protected areas in conserving large carnivores in Europe. in Protected areas 122–133 (John Wiley and Sons, Ltd., 2016). https://doi.org/10.1002/9781118338117.ch7.Rodrigues, A. S. L., Pilgrim, J. D., Hoffmann, M. & Lamoreux, J. F. The value of the IUCN red list for conservation. Trends Ecol. Evol. 21, 71–76 (2006).PubMed 

    Google Scholar 
    Government of Brazil. Mapas multimodais. Ministério da Infraestrutura http://www.infraestrutura.gov.br/ (2018).Assis, L. F. F. G. et al. TerraBrasilis: A spatial data analytics infrastructure for large-scale thematic mapping. ISPRS Int. J. Geo Inf. 8, 513 (2019).
    Google Scholar  More

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    Universal relation for life-span energy consumption in living organisms: Insights for the origin of aging

    We showed that the new metabolic rate relation13 can be directly linked to the total energy consumed in a lifespan if a constant number ({mathrm{N}}_{mathrm{r}}) of respiration cycles per lifespan is conjectured, and a corrected relation for the total energy consumed in a lifespan was found [Eq. (1)] that can explain the origin of variations in the ‘rate of living’ theory2,5 and unify them into a single formulation. It is important to note that Eq. (1) is a direct consequence of combining the two empirical relations mentioned (the new metabolic rate relation and the relation of the total number ({mathrm{N}}_{mathrm{r}}) of respiration cycles per lifespan) and is not an assumption (based on the lifespan energy expenditure per gram) as in the traditional ‘rate of living’ theory2,5. We test the validity and accuracy of the predicted relation [Eq. (1)] for the total energy consumed in a lifespan with (sim 300) species representing different classes of living organisms, and we find that the relation has an average scatter of only 0.3 dex, with 95% of the organisms having departures of less than a factor of (pi) from the relation, despite the difference of (sim 20) orders of magnitude in body mass.Successful testing of predictions is crucial in any proposed theory according to Popper’s deductive method of falsification (27), which is the criterion for identifying a successful scientific theory. Therefore, the success of the predicted Eq. (1) that is displayed in Fig. 1 implies that the corrected metabolic rate relation13 has passed an initial test. This prediction also reduces any possible interclass variation in the relation, which has been considered the most persuasive evidence against the ‘rate of living’ theory, to only a geometrical factor and strongly supports the conjectured invariant number ({mathrm{N}}_{mathrm{r}} sim 10^8) of respiration cycles per lifespan in all living organisms.Invariant quantities in physics traditionally reflect fundamental underlying constraints, a principle that has also been applied recently to life sciences such as ecology21,22. Figure 2 indicates the fact that, for a given temperature, the total lifespan energy consumption per gram per ‘generalized beat’ (({mathrm{N}}_{{mathrm{b}}}^{mathrm{G}} equiv mathrm{a} {mathrm{N}}_{{mathrm{r}}} = {mathrm{a}} ,1.62 times 10^8)) is remarkably constant (around ({mathrm{E}}_{2019})), a result that is also in agreement with previous expectations based on (lifespan) basal oxygen consumption at the molecular level38. This supports the idea that the overall energetics during the lifespan are the same for all the organisms studied, as it is predetermined by the basic energetics of respiration, and therefore, Rubner’s original picture is shown to be valid without systematic exceptions but in a more general form. Moreover, since the value determined from Fig. 2 is remarkably similar to ({mathrm{E}}_{2019} {mathrm{N}}_{mathrm{r}}), it can be considered an independent determination of ({mathrm{E}}_{2019}), suggesting that ({mathrm{E}}_{2019}) is a candidate for being a universal constant and not just a fitting parameter from the corrected metabolic relation13.In addition, we showed here that the invariant total lifespan energy consumption per gram per ‘generalized beat’ comes directly from the existence of another invariant, the approximately constant total number ({mathrm{N}}_{mathrm{r}} sim 10^8) of respiration cycles per lifetime, effectively converting the ‘generalized beat’ into the characteristic clock during the lifespan. Therefore, the exact physical relation between (oxidative) free radical damage and the origin of aging is most likely related to the striking existence of a constant total number of respiration cycles ({mathrm{N}}_{{mathrm{r}}}) over the lifetime of all organisms, which predetermines the extension of life. Moreover, the relation ({mathrm{t}}_{{mathrm{life}}} = mathrm{N}_{mathrm{r}}/mathrm{f}_{{{mathrm{resp}}}}) quantifies the ideas of oxidative damage by the respiratory metabolism, which are motivated mainly by biomedical considerations, into a simple mathematical form that could be included in a broader life-history framework; this is needed to produce testable predictions for the ‘free-radical’ hypothesis in the life-history context28. Future theoretical and experimental studies that investigate the exact link between the constant number ({mathrm{N}}_{mathrm{r}} sim 10^8) of respiration cycles per lifespan and the production rates of free radicals (or alternatively, other byproducts of metabolism) should shed light on the origin of aging and the physical cause of natural mortality.Although this relation ({mathrm{t}}_{{mathrm{life}}} = mathrm{N}_{mathrm{r}}/mathrm{f}_{{mathrm{resp}}}) has only been empirically examined for mammalian vertebrates, in terms of heartbeats per lifetime, there is evidence to believe that the relative constancy of the number of respiration cycles per lifetime is more widely distributed in the animal kingdom. For example, a reptile such as the Galapagos tortoise with a life expectancy of 177 years and a respiration rate of 3 breaths/min has (2.8 times 10^8) breaths per lifetime29, which is within a factor of 2 of the value determined for mammals. A more different case is that of birds, which have more heartbeats/lifetime by a factor of 330; this difference is reduced to a factor of 1.5 in terms of breaths/lifetime ((mathrm{N}_{mathrm{r}} = mathrm{N}_{mathrm{b}}/{mathrm{a}}), with (hbox {a}=9) for birds and 4.5 for mammals; 17). Among fish, the average number of heartbeats/lifetime tends to be an order of magnitude less than that in mammals ((mathrm{N}_{mathrm{b}} = 7.3 times 10^8);16), for example, (mathrm{N}_{mathrm{b}} = 6.7 times 10^7) for trout31, but in such cases, the parameter a can be as low as 0.5 (i.e., a heart frequency lower than the respiratory frequency; 32), again implying a similar ({mathrm{N}}_{mathrm{r}} ,(= mathrm{N}_{mathrm{b}}/{mathrm{a}} = 1.3 times 10^8)). A more extreme difference in terms of heartbeats is the tiny Daphnia, which uses up to (1.7 times 10^7) heartbeats (at 25 C) in a short lifespan of 30 days33. Simple invertebrates, such as Daphnia, do not have a complex respiratory system with lungs and obtain oxygen for respiration through diffusion, but a “breath frequency” can be estimated from its respiration rate ((sim mu {mathrm{l}} {mathrm{O}}_2 hbox {hr}^{-1});34) divided by ({mathrm{E}}_{2019} M) (with ({mathrm{M}} sim 100 mu {mathrm{g}});35), giving ({mathrm{N}}_{mathrm{r}} = 1.5 times 10^8) respiration cycles per lifetime. In summary, a difference of two orders of magnitude in total heartbeats (between Daphnia and birds) is reduced to less than a factor of 2 in breaths per lifetime, further supporting that all organisms seem to live for the same span in units of respiration cycles (({mathrm{N}}_{mathrm{r}} sim 10^8)).It has also been suggested that an analogous invariant originates at the molecular level23, the number of ATP turnovers of the molecular respiratory complexes per cell in a lifetime, which, from an energy conservation model that extends metabolism to intracellular levels, is estimated to be (sim 1.5 times 10^{16})23. A similar number can be determined by taking into account that human cells require the synthase of approximately 100 moles of ATP daily, equivalent to (7 times 10^{20}) molecules per second. For (sim 3 times 10^{13}) cells in the human body and for a respiration rate of 15 breaths per minute, this gives (sim 9 times 10^{7}) ATP molecules synthesized per cell per breath, which for the invariant total number ({mathrm{N}}_{mathrm{r}}) of respiration cycles per lifetime found in this work, rises to the same number of (sim 1.5 times 10^{16}) ATP turnovers in a lifetime per cell, showing the equivalence between both invariants and linking ({mathrm{N}}_{mathrm{r}}) to the energetics of respiratory complexes at the cellular level.The excellent agreement between the predicted relation [Eq. (1)] and the data across all types of organisms emphasizes the fact that lifespan indeed depends on multiple factors (B, a, M, T & (mathrm{T}_{mathrm{a}})) and strongly supports the methodology presented in this work of multifactorial testing, as shown in Fig. 1, since quantities in life sciences generally suffer from a confounding variable problem. An example of this problem, illustrated by individually testing each of the relevant factors, is given in24, which for a large (and noisy) sample test for ({mathrm{t}}_{{{mathrm{life}}}} propto 1/B) shows no clear correlation. From Eq. (1), it is clear that in an uncontrolled experiment, the dependence on the rest of the parameters (M, a, T, & ({mathrm{T}}_{mathrm{a}})) might eliminate the dependence on the metabolic rate B (in fact, this may be for the same reason that Rubner’s work7 focused on the mass-specific metabolic rate B/M instead of B). This work24 finds only a residual inverse dependence of ({mathrm{t}}_{{mathrm{life}}}) on the ambient temperature ({mathrm{T}}_{{mathrm{a}}}) for ectotherms, which is expected according to Eq. (1) (Big (mathrm{t}_{{mathrm{life}}} propto {mathrm{exp}}Big ({small frac{mathrm{E}_{mathrm{a}}}{mathrm{k} {mathrm{T}}_{mathrm{a}}}}Big ) Big )).Finally, the empirical support in favor of Eq. (1) allows us to perform several estimations regarding how much the energy consumption will vary with changing physical conditions on Earth. For example, computing by how much the energy consumption will vary in biomass performing aerobic respiration as the Earth’s temperature increases is relevant in the current context of possible global warming. This is given by the factor ({mathrm{exp}}Big [{small frac{mathrm{E}_{mathrm{a}}}{{mathrm{k}}} Big (frac{1}{ {mathrm{T}}}} – {small frac{1}{ {mathrm{T}}+1}}Big ) Big ]), which for an activation energy of ({mathrm{E}}_{mathrm{a}} = 0.63 ,hbox {eV}) and a temperature of (30^{circ }hbox {C}) implies an increase of 8.3% in energy consumption per 1 degree increase in the average Earth temperature. This result can be straightforwardly applied in ectotherms since their body temperatures adapt to the environmental temperature (({mathrm{T}}={mathrm{T}}_{mathrm{a}})), but its implications for endothermic organisms are less clear. Another relevant estimation is to compute by how much B({mathrm{t}}_{{mathrm{life}}})/M would vary from Eq. (1) (i.e., the difference between Figs. 2 and 3) as a function of body temperature (T) and the ratio of heart rate to respiratory rate ((mathrm{a}= mathrm{f}_{mathrm{H}}/ {mathrm{f}}_{{mathrm{resp}}})). Variations in B({mathrm{t}}_{{mathrm{life}}})/M are relevant since this is a key quantity in the estimation of the energy allocation to fitness, which aims to explain in terms of trade offs the so-called ‘Equal Fitness Paradigm’39 that concerns why most organisms in the biosphere are more or less equally fit, other than the diversity seen in the size, form and function of living organisms on Earth.In the near future, our plan is to generate a (metabolic) theory starting from the new metabolic rate relation13 by assuming that it is the controlling rate in ecology in order to explain a variety of ecological phenomena in a similar fashion as the metabolic theory of ecology18 does using Kleiber’s law. A first step in this direction looks very promising40, as it can show that ontogenetic growth can be described by a universal growth curve without the aid of fitting parameters, can explain the origin of several ‘Life History Invariants’21 and can show how the heart rate may actually set several biological times (i.e., lifespan and generation time) and even some ecological rates (i.e., The Malthusian parameter). More

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    Investigating weighted fishing hooks for seabird bycatch mitigation

    Phillips, R. et al. The conservation status and priorities for albatrosses and large petrels. Biol. Conserv. 201, 169–183. https://doi.org/10.1016/j.biocon.2016.06.017 (2016).Article 

    Google Scholar 
    Dias, M. et al. Threats to seabirds: A global assessment. Biol. Conserv. 237, 525–537. https://doi.org/10.1016/j.biocon.2019.06.033 (2019).Article 

    Google Scholar 
    IUCN. The IUCN Red List of Threatened Species. Version 2021-1, www.iucnredlist.org, ISSN 2307-8235. (International Union for the Conservation of Nature, 2021).Brothers, N., Cooper, J. & Løkkeborg, S. The Incidental Catch of Seabirds by Longline Fisheries: Worldwide Review and Technical Guidelines for Mitigation. FAO Fisheries Circular No. 937. (Food and Agriculture Organization of the United Nations, 1999)Gilman, E., Brothers, N. & Kobayashi, D. Principles and approaches to abate seabird bycatch in longline fisheries. Fish Fish. 6, 35–49. https://doi.org/10.1111/j.1467-2679.2005.00175.x (2005).Article 

    Google Scholar 
    Løkkeborg, S. Best practices to mitigate seabird by—catch in longline, trawl and gillnet fisheries—efficiency and practical applicability. Mar. Ecol. Prog. Ser. 435, 285–303. https://doi.org/10.3354/meps09227 (2011).ADS 
    Article 

    Google Scholar 
    Gilman, E., Chaloupka, M., Peschon, J. & Ellgen, S. Risk factors for seabird bycatch in a pelagic longline tuna fishery. PLoS One 11, e0155477 (2016).Article 

    Google Scholar 
    Gilman, E., Kobayashi, D. & Chaloupka, M. Reducing seabird bycatch in the Hawaii longline tuna fishery. Endanger. Species Res. 5, 309–323. https://doi.org/10.3354/esr00133 (2008).Article 

    Google Scholar 
    WPRFMC. Annual Stock Assessment and Fishery Evaluation Report for U.S. Pacific Island Pelagic Fisheries Ecosystem Plan 2019. (Western Pacific Regional Fishery Management Council, Honolulu, 2020).Wren, J., Shaffer, S. & Polovina, J. Variations in black-footed albatross sightings in a North Pacific transition area due to changes in fleet dynamics and oceanography 2006–2017. Deep. Sea. Res. Part II Top. Stud. Oceanogr. 169–170, 104605. https://doi.org/10.1016/j.dsr2.2019.06.013 (2019).Article 

    Google Scholar 
    NMFS. Seabird Interactions and Mitigation Efforts in Hawaii Longline Fisheries. 2019 Annual Report. (Pacific Islands Regional Office, National Marine Fisheries Service, 2021).Hall, M., Gilman, E., Minami, H., Mituhasi, T. & Carruthers, E. Mitigating bycatch in tuna fisheries. Rev. Fish. Biol. Fisher. 27, 881–908. https://doi.org/10.1007/s11160-017-9478-x (2017).Article 

    Google Scholar 
    ACAP. ACAP Review and Best Practice Advice for Reducing the Impact of Pelagic Longline Fisheries on Seabirds. (Agreement on the Conservation of Albatrosses and Petrels, 2019).NMFS. Fisheries off west coast states and in the western Pacific; pelagic fisheries; additional measures to reduce the incidental catch of seabirds in the Hawaii pelagic longline fishery. US National Marine Fisheries Service. Fed. Regist. 70, 75075–77508 (2005).
    Google Scholar 
    Robertson, G., Candy, S. & Hall, S. New branch line weighting regimes to reduce the risk of seabird mortality in pelagic longline fisheries without affecting fish catch. Aquat. Conserv. 23, 885–900. https://doi.org/10.1002/aqc.2346 (2013).Article 

    Google Scholar 
    Melvin, E., Guy, T. & Read, L. Reducing seabird bycatch in the South African tuna fishery using bird-scaring lines, branch line weighting and nighttime setting of hooks. Fish. Res. 147, 72–82 (2013).Article 

    Google Scholar 
    Melvin, E., Guy, T. & Read, L. Best practice seabird bycatch mitigation for pelagic longline fisheries targeting tuna and related species. Fish. Res. 149, 5–18 (2014).Article 

    Google Scholar 
    Santos, R. et al. Improved line weighting reduces seabird bycatch without affecting fish catch in the Brazilian pelagic longline fishery. Aquat. Conserv. 29, 442–449. https://doi.org/10.1002/aqc.3002 (2019).Article 

    Google Scholar 
    Gilman, E., Chaloupka, M., Wiedoff, B. & Willson, J. Mitigating seabird bycatch during hauling by pelagic longline vessels. PLoS One 9, e84499. https://doi.org/10.1371/journal.pone.0084499 (2014).ADS 
    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Brothers, N. Incidence of Live Bird Haul Capture in Pelagic Longline Fisheries. Examination and Comparison of Live Bird Haul Captures in Fisheries Other Than the Hawaii Shallow Set Fishery Agreement on the Conservation of Albatrosses and Petrels. SBWG7 Doc 18. (Agreement on the Conservation of Albatrosses and Petrels, 2016).Jiminez, S., Domingo, A., Forselledo, R., Sullivan, B. & Yates, O. Mitigating bycatch of threatened seabirds: The effectiveness of branch line weighting in pelagic longline fisheries. Anim. Conserv. 22, 376–385. https://doi.org/10.1111/acv.12472 (2019).Article 

    Google Scholar 
    Bentley, L., Kato, A., Ropert-Coudert, Y., Manica, A. & Phillips, R. Diving behaviour of albatrosses: Implications for foraging ecology and bycatch susceptibility. Mar. Biol. 168, 36. https://doi.org/10.1007/s00227-021-03841-y (2021).Article 

    Google Scholar 
    Prince, P., Huin, N. & Weimerskirch, H. Diving depths of albatrosses. Antarct. Sci. 6, 353–354. https://doi.org/10.1017/S0954102094000532 (1994).ADS 
    Article 

    Google Scholar 
    Kazama, K., Harada, T., Deguchi, T., Suzuki, H. & Watanuki, Y. Foraging behavior of black-footed albatross Phoebastria nigripes rearing chicks on the Ogasawara Islands. Ornithol. Sci. 18, 27–37 (2019).Article 

    Google Scholar 
    Jiminez, S., Domingo, A., Abreu, M. & Brazeiro, A. Bycatch susceptibility in pelagic longline fisheries: Are albatrosses affected by the diving behaviour of medium-sized petrels?. Aquat. Conserv. 22, 436–445. https://doi.org/10.1002/aqc.2242 (2012).Article 

    Google Scholar 
    Barrington, J., Robertson, G. & Candy, S. Categorising Branchline Weighting for Pelagic Longline Fishing According to Sink Rate. ACAP-SBWG7-Doc7. (Agreement on the Conservation of Albatrosses and Petrels, 2016).NOAA. Endangered and threatened wildlife and plants: Listing the oceanic whitetip shark as threatened under the Endangered Species Act. Fed. Regist. 83, 4153–4165 (2018).
    Google Scholar 
    WPRFMC. Council Adopts Oceanic Whitetip Shark Protections for Hawaii and American Samoa Longline Fisheries. (Western Pacific Regional Fishery Management Council, 2021).Pierre, J., Goad, D. & Abraham, E. Novel Approaches to Line-Weighting in New Zealand’s Inshore Surface-Longline Fishery. (Dragonfly Data Science, 2015).Rawlinson, N., et al. The Relative Safety of Weighted Branchlines During Simulated Fly-backs (Cut-offs and Tear-outs). (AMC Research, 2018).Gilman, E., Beverly, S., Musyl, M. & Chaloupka, M. Commercial viability of alternative designs placing pelagic longline branchline weights at the hook to reduce seabird bycatch. Endanger. Species Res. 43, 223–233 (2020).Article 

    Google Scholar 
    Fenaughty, J. & Smith, N. A Simple New Method for Monitoring Longline Sink Rate to Selected Depths. Document WG-FSA-01/46. (Commission for the Conservation of Antarctic Marine Living Resources, 2001).Wienecke, B. & Robertson, G. Validation of sink rates of longlines measured using two different methods. CCAMLR Sci. 11, 179–187 (2004).
    Google Scholar 
    Melvin, E. & Wainstein, M. Seabird Avoidance Measures for Small Alaskan Longline Vessels (University of Washington, 2006).
    Google Scholar 
    CCAMLR. Longline Weighting for Seabird Conservation. Conservation Measure 24-02. (Commission for the Conservation of Antarctic Marine Living Resources, 2014).Robertson, G., Candy, S., Wienecke, B. & Lawton, K. Experimental determinations of factors affecting the sink rates of baited hooks to minimize seabird mortality in pelagic longline fisheries. Aquat. Conserv. 20, 632–643. https://doi.org/10.1002/aqc.1140 (2010).Article 

    Google Scholar 
    Wondershare Technology. Wondershare Filmora X. Version 10.2.0.32. (Wondershare Technology Co., 2021).Gabry, J., Simpson, D., Vehtari, A., Betancourt, M. & Gelman, A. Visualization in Bayesian workflow. J. R. Stat. Soc. Ser. A 182, 1–14. https://doi.org/10.1111/rssa.12378 (2019).MathSciNet 
    Article 

    Google Scholar 
    Gelman, A., et al. Bayesian Workflow. arXiv:2011.01808v1 (2020).Gelman, A, & Hill, J. Data Analysis Using Regression and Multilevel/Hierarchical Models. (Cambridge University Press, 2007).Carpenter, B. et al. Stan: A probabilistic programming language. J. Stat. Softw. 76, 1–32. https://doi.org/10.18637/jss.v076.i01 (2017).Article 

    Google Scholar 
    Bürkner, P. brms: An R Package for Bayesian multilevel models using Stan. J. Stat. Softw. 81, 1–28. https://doi.org/10.18637/jss.v080.i01 (2017).Article 

    Google Scholar 
    Gilman, E., Chaloupka, M. & Musyl, M. Effects of pelagic longline hook size on species- and size-selectivity and survival. Rev. Fish. Biol. Fish. 28, 417–433. https://doi.org/10.1007/s11160-017-9509-7 (2018).Article 

    Google Scholar 
    Signorell, A., et al. DescTools: Tools for Descriptive Statistics. R package version 0.99.18. (R Core Team, 2016).Wackerly, D., Mendenhall, W. & Scheaffer, R. Mathematical Statistics with Applications. 3rd ed. (Duxbury Press, 1986).van Houwelingen, H., Arends, L. & Stijnen, T. Advanced methods in meta-analysis: Multivariate approach and meta-regression. Stat. Med. 21, 589–624. https://doi.org/10.1002/sim.1040 (2002).Article 
    PubMed 

    Google Scholar 
    Viechtbauer, W. Conducting meta-analyses in R with the metafor package. J. Stat. Softw. 36, 1–48. https://doi.org/10.18637/jss.v036.i03 (2010).Article 

    Google Scholar 
    Günhan, B., Röver, C. & Friede, T. Random-effects meta-analysis of few studies involving rare events. Res. Synth. Methods 11, 74–90. https://doi.org/10.1002/jrsm.1370 (2020).Article 
    PubMed 

    Google Scholar 
    Lemoine, N. Moving beyond noninformative priors: Why and how to choose weakly informative priors in Bayesian analyses. Oikos 128, 912–928. https://doi.org/10.1111/oik.05985 (2019).Article 

    Google Scholar 
    Schild, A. & Voracek, M. Finding your way out of the forest without a trail of bread crumbs: Development and evaluation of two novel displays of forest plots. Res. Synth. Methods 6, 74–86. https://doi.org/10.1002/jrsm.1125 (2015).Article 
    PubMed 

    Google Scholar 
    van der Bles, A. et al. Communicating uncertainty about facts, numbers and science. R. Soc. Open Sci. 6, 181870. https://doi.org/10.1098/rsos.181870 (2019).ADS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Wickham, H. ggplot2: Elegant Graphics for Data Analysis. 2nd ed. (Springer, 2016).Zeileis, A. et al. colorspace: A toolbox for manipulating and assessing colors and palettes. J. Stat. Softw. 96, 1–4. https://doi.org/10.18637/jss.v096.i01 (2020).Article 

    Google Scholar 
    Vovk, V. & Wang, R. Combining p-values via averaging. Biometrika 107, 791–808. https://doi.org/10.1093/biomet/asaa027 (2020).MathSciNet 
    Article 
    MATH 

    Google Scholar 
    Gilman, E., Brothers, N. & Kobayashi, D. Comparison of the efficacy of three seabird bycatch avoidance methods in Hawaii pelagic longline fisheries. Fish. Sci. 73, 208–210 (2007).CAS 
    Article 

    Google Scholar 
    Star-Oddi. DST centi-TD Miniature Temperature and Depth Data Logger. (Star-Oddi, 2021).Frankish, C., Manica, A., Navarro, J. & Phillips, R. Movements and diving behaviour of white-chinned petrels: Diurnal variation and implications for bycatch mitigation. Aquat. Conserv. 31, 1715–1729. https://doi.org/10.1002/aqc.3573 (2021).Article 

    Google Scholar 
    Cooke, S. & Suski, C. Are circular hooks and effective tool for conserving marine and freshwater recreational catch-and-release fisheries?. Aquat. Conserv. 14, 299–326. https://doi.org/10.1002/aqc.614 (2004).Article 

    Google Scholar 
    Ward, P., Lawrence, E., Darbyshire, R. & Hindmarsh, S. Large-scale experiment shows that nylon leaders reduce shark bycatch and benefit pelagic longline fishers. Fish. Res. 90, 100–108. https://doi.org/10.1016/j.fishres.2007.09.034 (2008).Article 

    Google Scholar 
    McCormack, E. & Rawlinson, N. The Relative Safety of the Agreement on the Conservation of Albatrosses and Petrels (ACAP) Recommended Minimum Specifications for the Weighting of Branchlines during Simulated Fly-backs. ACAP-SBWG7-Doc8. (Agreement on the Conservation of Albatrosses and Petrels, 2016).Goad, D., Debski, I. & Potts, J. Hookpod-mini: A smaller potential solution to mitigate seabird bycatch in pelagic longline fisheries. Endanger. Species Res. 39, 1–8. https://doi.org/10.3354/esr00953 (2019).Article 

    Google Scholar 
    WHO. Global Health Risks: Mortality and Burden of Disease Attributable to Selected Major Risks. (World Health Organization, 2009).Grade, T. et al. Lead poisoning from ingestion of fishing gear: A review. Ambio 48, 1023–1038. https://doi.org/10.1007/s13280-019-01179-w (2019).CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Gilman, E. et al. Highest risk abandoned, lost and discarded fishing gear. Sci. Rep. 11, 7195. https://doi.org/10.1038/s41598-021-86123-3 (2021).ADS 
    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Brothers, N. In Pursuit of Procella—A Heavy Hook for Pelagic Longlines to Reduce Procellariiforme Bycatch. SBWG 10 Inf 09. (Agreement on the Conservation of Albatrosses and Petrels, 2021).Bluhm, R. From hierarchy to network: A richer view of evidence for evidence-based medicine. Perspect. Biol. Med. 48, 535–547. https://doi.org/10.1353/pbm.2005.0082 (2005).Article 
    PubMed 

    Google Scholar 
    Stegenga, J. Down with the hierarchies. Topoi 33, 313–322. https://doi.org/10.1007/s11245-013-9189-4 (2014).Article 

    Google Scholar 
    Marchionni, C. & Reijula, S. What is mechanistic evidence, and why do we need it for evidence-based policy?. Stud. Hist. Philos. Sci. A 73, 54–63. https://doi.org/10.1016/j.shpsa.2018.003 (2019).Article 

    Google Scholar 
    Beverly, S., Chapman, L. & Sokimi, W. Horizontal Longline Fishing Methods and Techniques. Manual for Fishermen. (Secretariat of the Pacific Community, 2003).Guilford, T., Padget, O., Maurice, L. & Catry, P. Unexpectedly deep diving in an albatross. Curr. Biol. 32, R26–R28. https://doi.org/10.1016/j.cub.2021.11.036 (2022).CAS 
    Article 
    PubMed 

    Google Scholar  More

  • in

    Probing the antioxidant activity of functional proteins and bioactive peptides in Hermetia illucens larvae fed with food wastes

    Ebner, J., Babbitt, C., Winer, M., Hilton, B. & Williamson, A. Life cycle greenhouse gas (GHG) impacts of a novel process for converting food waste to ethanol and co-products. Appl. Energy 130, 86–93 (2014).CAS 

    Google Scholar 
    Tonini, D., Albizzati, P. F. & Astrup, T. F. Environmental impacts of food waste: Learnings and challenges from a case study on UK. Waste Manag. 76, 744 (2018).PubMed 

    Google Scholar 
    Sze, E., Yau, Y. H. & Wu, K. C. Application of anaerobic bacterial ammonification pretreatment to microalgal food waste leachate cultivation and biofuel production. Mar. Pollut. Bull. 153, 111007 (2020).PubMed 

    Google Scholar 
    Winkel, T. D., Wahlen, S. & Jensen, T. in Nordic Conference on Consumer Research.Wang, P. et al. Effects of graphite, graphene, and graphene oxide on the anaerobic co-digestion of sewage sludge and food waste: attention to methane production and the fate of antibiotic resistance genes. Bioresour. Technol. 339, 125585 (2021).CAS 
    PubMed 

    Google Scholar 
    Gianico, A., Gallipoli, A., Pagliaccia, P. & Braguglia, C. M. Anaerobic bioconversion of food waste into energy: A critical review (2013).Smetana, S., Ites, S., Parniakov, O., Aganovic, K. & Heinz, V. in 71st Annual Meeting of the European Federation of Animal Science.Ojha, S., Buler, S. & Schlüter, O. Food waste valorisation and circular economy concepts in insect production and processing. Waste Manag. 118, 600–609 (2020).CAS 
    PubMed 

    Google Scholar 
    Scala, A. et al. Rearing substrate impacts growth and macronutrient composition of Hermetia illucens (L.) (Diptera: Stratiomyidae) larvae produced at an industrial scale. Sci. Rep. 10, 1–8 (2020).ADS 

    Google Scholar 
    McDonald, C., Campbell, K. A., Benson, C., Davis, M. J. & Frost, C. J. Workforce development and multiagency collaborations: a presentation of two case studies in child welfare. Sustainability 13, 10190 (2021).
    Google Scholar 
    Kim, C.-H. et al. Use of black soldier fly larvae for food waste treatment and energy production in asian countries: a review. Processes 9, 161 (2021).CAS 

    Google Scholar 
    Julita, U., Fitri, L., Putra, R. & Permana, A. Mating success and reproductive behavior of black soldier fly Hermetia illucens L. (diptera, stra-tiomyidae) in tropics. J. Ento-mol. 17, 117–127 (2020).CAS 

    Google Scholar 
    Rehman, K. U. et al. Conversion of mixtures of dairy manure and soybean curd residue by black soldier fly larvae (Hermetia illucens L.). J. Clean. Prod. 154, 366–373 (2017).CAS 

    Google Scholar 
    Li, Q., Zheng, L., Hao, C., Garza, E. & Zhou, S. From organic waste to biodiesel: Black soldier fly, Hermetia illucens, makes it feasible. Fuel 90, 1545–1548 (2011).CAS 

    Google Scholar 
    Köhler, R., Kariuki, L., Lambert, C. & Biesalski, H. K. Protein, amino acid and mineral composition of some edible insects from Thailand. J. Asia Pac. Entomol. 22, 372–378 (2019).
    Google Scholar 
    Belghit, I. et al. Black soldier fly larvae meal can replace fish meal in diets of sea-water phase Atlantic salmon (Salmo salar). Aquaculture (2018).Moretta, A. et al. Antimicrobial peptides: A new hope in biomedical and pharmaceutical fields. Front. Cell. Infect. Microbiol. 11, 453 (2021).
    Google Scholar 
    Manniello, M. et al. Insect antimicrobial peptides: potential weapons to counteract the antibiotic resistance. Cell. Mol. Life Sci. 89, 1–24 (2021).
    Google Scholar 
    Henriques, B. S., Garcia, E. S., Azambuja, P. & Genta, F. A. Determination of chitin content in insects: an alternate method based on calcofluor staining. Front. Physiol. 11, ARTN 11710.3389/fphys.2020.00117 (2020).Hbl, M., Mráz, P., Ipo, J., Hotiková, I. & Kopec, T. Polyphenols as food supplement improved food consumption and longevity of honey bees (Apis mellifera) intoxicated by pesticide thiacloprid. Insects 12 (2021).Li, H., Dai, C., Zhu, Y. & Hu, Y. Larvae crowding increases development rate, improves disease resistance, and induces expression of antioxidant enzymes and heat shock proteins in Mythimna separata (Lepidoptera: Noetuidae). J. Econ. Entomol. 4 (2021).Hao, et al. Effects of enzymatic hydrolysis assisted by high hydrostatic pressure processing on the hydrolysis and allergenicity of proteins from ginkgo seeds. Food Bioprocess Technol. 9, 839–848 (2016).
    Google Scholar 
    Nadeem, M., Mumtaz, M. W., Danish, M., Rashid, U. & Raza, S. A. Calotropis procera: UHPLC-QTOF-MS/MS based profiling of bioactives, antioxidant and anti-diabetic potential of leaf extracts and an insight into molecular docking. J. Food Meas. Charact. 13, 3206–3220 (2019).
    Google Scholar 
    Altomare, A. A., Baron, G., Aldini, G., Carini, M. & D’Amato, A. Silkworm pupae as source of high-value edible proteins and of bioactive peptides. Food Sci. Nutr. 8, 2652–2661 (2020).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Zielińska, E., Baraniak, B. & Karaś, M. Identification of antioxidant and anti-inflammatory peptides obtained by simulated gastrointestinal digestion of three edible insects species (Gryllodes sigillatus, Tenebrio molitor, Schistocerca gragaria). Int. J. Food Sci. Technol. 53, 2542–2551 (2018).
    Google Scholar 
    Sousa, P., Borges, S. & Pintado, M. Enzymatic hydrolysis of insect Alphitobius diaperinus towards the development of bioactive peptide hydrolysates. Food Funct. 11, 3539–3548 (2020).CAS 
    PubMed 

    Google Scholar 
    Jakubczyk, A., Karaś, M., Rybczyńska-Tkaczyk, K., Zielińska, E. & Zieliński, D. Current trends of bioactive peptides—New sources and therapeutic effect. Foods 9, 846 (2020).CAS 
    PubMed Central 

    Google Scholar 
    Li, K., Li, X.-M., Ji, N.-Y. & Wang, B.-G. Natural bromophenols from the marine red alga Polysiphonia urceolata (Rhodomelaceae): structural elucidation and DPPH radical-scavenging activity. Bioorg. Med. Chem. 15, 6627–6631 (2007).CAS 
    PubMed 

    Google Scholar 
    He, R., Girgih, A. T., Malomo, S. A., Ju, X. R. & Aluko, R. E. Antioxidant activities of enzymatic rapeseed protein hydrolysates and the membrane ultrafiltration fractions. J. Funct. Foods 5, 219–227. https://doi.org/10.1016/j.jff.2012.10.008 (2013).CAS 
    Article 

    Google Scholar 
    Cui, Q., Sun, Y. X., Cheng, J. J. & Guo, M. R. Effect of two-step enzymatic hydrolysis on the antioxidant properties and proteomics of hydrolysates of milk protein concentrate. Food Chem. 366, 10. https://doi.org/10.1016/j.foodchem.2021.130711 (2022).CAS 
    Article 

    Google Scholar 
    Liu, Y., Wan, S., Liu, J., Zou, Y. & Liao, S. Antioxidant activity and stability study of peptides from enzymatically hydrolyzed male silkmoth. J. Food Process. Preserv. 41 (2017).Carrasco-Castilla, J. et al. Antioxidant and metal chelating activities of peptide fractions from phaseolin and bean protein hydrolysates. Food Chem. 135, 1789–1795 (2012).CAS 
    PubMed 

    Google Scholar 
    Phongthai, S., D’Amico, S., Schoenlechner, R., Homthawornchoo, W. & Rawdkuen, S. Fractionation and antioxidant properties of rice bran protein hydrolysates stimulated by in vitro gastrointestinal digestion. Food Chem. 240, 156 (2018).CAS 
    PubMed 

    Google Scholar 
    Lee, S. J. et al. Antioxidant activity of a novel synthetic hexa-peptide derived from an enzymatic hydrolysate of duck skin by-products. Food Chem. Toxicol. 62, 276–280 (2013).CAS 
    PubMed 

    Google Scholar 
    Collin, F. Chemical basis of reactive oxygen species reactivity and involvement in neurodegenerative diseases. Int. J. Mol. Sci. 20, 2407 (2019).PubMed Central 

    Google Scholar 
    Xiang, Q., Yu, J. & Wong, P. K. Quantitative characterization of hydroxyl radicals produced by various photocatalysts. J. Colloid Interface Sci. 357, 163–167 (2011).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Wang, Y. et al. Optimizing oxygen functional groups in graphene quantum dots for improved antioxidant mechanism. Phys. Chem. Chem. Phys. 21, 1336–1343 (2019).CAS 
    PubMed 

    Google Scholar 
    Arise, A. K. et al. Antioxidant activities of bambara groundnut (Vigna subterranea) protein hydrolysates and their membrane ultrafiltration fractions. Food Funct. 7, 2431–2437. https://doi.org/10.1039/c6fo00057f (2016).CAS 
    Article 
    PubMed 

    Google Scholar 
    Ren, J. et al. Purification and identification of antioxidant peptides from grass carp muscle hydrolysates by consecutive chromatography and electrospray ionization-mass spectrometry. Food Chem. 108, 727–736. https://doi.org/10.1016/j.foodchem.2007.11.010 (2008).CAS 
    Article 
    PubMed 

    Google Scholar 
    Zhang, C., Wei, X., Omenn, G. S. & Zhang, Y. Structure and protein interaction-based gene ontology annotations reveal likely functions of uncharacterized proteins on human chromosome 17. 17 (2018).Long, C. N. et al. High-level production of Monascus pigments in Monascus ruber CICC41233 through ATP-citrate lyase overexpression. Biochem. Eng. J. 146, 160–169. https://doi.org/10.1016/j.bej.2019.03.007 (2019).CAS 
    Article 

    Google Scholar 
    Brito Querido, J. et al. The cryo-EM structure of a novel 40S kinetoplastid-specific ribosomal protein. Structure 25, 1785–1794 e1783. https://doi.org/10.1016/j.str.2017.09.014 (2017).Hamey, J. J. & Wilkins, M. R. Methylation of elongation factor 1A: Where, who, and why?. Trends Biochem. Sci. 43, 211–223. https://doi.org/10.1016/j.tibs.2018.01.004 (2018).CAS 
    Article 
    PubMed 

    Google Scholar 
    Kuo, C. P. et al. Analysis of the immune response of human dendritic cells to Mycobacterium tuberculosis by quantitative proteomics. Proteome Sci. 14, 1–11 (2016).
    Google Scholar 
    Zhu, J. et al. Expression and RNA interference of ribosomal protein L5 gene in Nilaparvata lugens (Hemiptera: Delphacidae). J. Insect. Sci. 3 (2017).Teng, T., Mercer, C. A., Hexley, P., Thomas, G. & Fumagalli, S. Loss of tumor suppressor RPL5/RPL11 does not induce cell cycle arrest but impedes proliferation due to reduced ribosome content and translation capacity. Mol. Cell. Biol. 33, 4660–4671. https://doi.org/10.1128/mcb.01174-13 (2013).CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Rittschof, C. C. & Schirmeier, S. Insect models of central nervous system energy metabolism and its links to behavior. Glia (2017).Alar, A. F., Akr, B. & Gülseren, I. LC-Q-TOF/MS based identification and in silico verification of ACE-inhibitory peptides in Giresun (Turkey) hazelnut cakes. Eur. Food Res. Technol. (2021).Shang, W. H. et al. In silico assessment and structural characterization of antioxidant peptides from major yolk protein of sea urchin Strongylocentrotus nudus. Food Funct. 9, 6435–6443 (2018).CAS 
    PubMed 

    Google Scholar 
    Ajibola, C. F., Fashakin, J. B., Fagbemi, T. N. & Aluko, R. E. Effect of peptide size on antioxidant properties of African yam bean seed (Sphenostylis stenocarpa) protein hydrolysate fractions. Int. J. Mol. Sci. 12, 6685–6702 (2011).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Liu, H. et al. Enhancing the antioxidative effects of foods containing rutin and α-amino acids via the Maillard reaction: A model study focusing on rutin-lysine system. J. Food Biochem. 44, e13086 (2020).PubMed 

    Google Scholar 
    Tsopmo, A. et al. Tryptophan released from mother’s milk has antioxidant properties. Pediatr. Res. 66, 614–618 (2009).CAS 
    PubMed 

    Google Scholar 
    Yu, Z. et al. Identification and molecular docking study of fish roe-derived peptides as potent BACE 1, AChE, and BChE inhibitors. Food Funct. 11 (2020).Li, C. et al. Preliminary study on a potential antibacterial peptide derived from histone H2A in hemocytes of scallop Chlamys farreri. Fish Shellf. Immunol. 22, 663–672 (2007).
    Google Scholar 
    Arockiaraj, J. et al. An unconventional antimicrobial protein histone from freshwater prawn Macrobrachium rosenbergii: analysis of immune properties. Fish Shellfish Immunol. 35, 1511–1522 (2013).CAS 
    PubMed 

    Google Scholar 
    Ju, J. et al. Major components in Lilac and Litsea cubeba essential oils kill Penicillium roqueforti through mitochondrial apoptosis pathway. Ind. Crops Products 149, 112349 (2020).CAS 

    Google Scholar 
    Al-Dhafri, K., Chai, L. C. & Karsani, S. A. Purification and characterization of antimicrobial peptide fractions of Junipers seravschanica. Biocatal. Agric. Biotechnol. 28, 101554 (2020).
    Google Scholar 
    Ratnakomala, S., Ridwan, R., Lisdiyanti, P., Abinawanto, A. & Andi, U. Screening of actinomycetes producing an ATPase inhibitor of japanese encephalitis virus RNA helicase from soil and leaf litter samples. Microbiol. Indonesia 5, 15–20 (2011).
    Google Scholar 
    Zhao, X., Zhang, J. & Zhu, K. Y. Chito-protein matrices in arthropod exoskeletons and peritrophic matrices (2019).Pustylnikov, S., Sagar, D., Jain, P. & Khan, Z. K. Targeting the C-type lectins-mediated host-pathogen interactions with dextran. J. Pharm. Pharm. Sci. 17 (2014).Kiew, P. L. & Don, M. M. Jewel of the seabed: sea cucumbers as nutritional and drug candidates. Int. J. Food Sci. Nutr. 63, 616–636 (2012).CAS 
    PubMed 

    Google Scholar 
    Liu, Z., Su, Y. & Zeng, M. Amino acid composition and functional properties of giant red sea cucumber (Parastichopus californicus) collagen hydrolysates. J. Ocean Univ. China 10, 80–84 (2011).ADS 
    CAS 

    Google Scholar 
    Zaky, A. A., Liu, Y., Han, P., Chen, Z. & Jia, Y. Effect of pepsin–trypsin in vitro gastro-intestinal digestion on the antioxidant capacities of ultra-filtrated rice bran protein hydrolysates (molecular weight > 10 kDa; 3–10 kDa, and< 3 kDa). Int. J. Pept. Res. Ther. 1–7 (2019).Kim, S.-B., Yoon, N. Y., Shim, K.-B. & Lim, C.-W. Antioxidant and angiotensin I-converting enzyme inhibitory activities of northern shrimp (Pandalus borealis) by-products hydrolysate by enzymatic hydrolysis. Fish. Aquat. Sci. 19, 1–6 (2016). Google Scholar  Chung, Y. C., Chang, C. T., Chao, W. W., Lin, C. F. & Chou, S. T. Antioxidative activity and safety of the 50 ethanolic extract from red bean fermented by Bacillus subtilis IMR-NK1. J. Agric. Food Chem. 50, 2454–2458. https://doi.org/10.1021/jf011369q (2002).CAS  Article  PubMed  Google Scholar  Zielińska, E., BaRaniak, B. & Karaś, M. Antioxidant and anti-inflammatory activities of hydrolysates and peptide fractions obtained by enzymatic hydrolysis of selected heat-treated edible insects. Nutrients 9, 1–14 (2017). Google Scholar  Rahman, M. M., Byanju, B., Grewell, D. & Lamsal, B. P. High-power sonication of soy proteins: Hydroxyl radicals and their effects on protein structure. Ultrason. Sonochem. 64, 105019 (2020).CAS  PubMed  Google Scholar  More