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    Preserving pieces of history in eggshells and birds’ nests

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    Here at the Natural History Museum at Tring, UK, I’m in our nest collection, which numbers just over 4,000. Behind me are 67 metal cabinets with nests arranged in taxonomic order. Each nest is labelled with the date and place of collection, and the collector’s name. Next to me is a 1928 mud nest from Argentina that was made by the rufous hornero (Furnarius rufus), known for its large, globular nests that shield eggs and young from predators.I’m the senior curator of birds’ eggs and nests. I ensure that specimens are stored appropriately to prevent damage and are well catalogued, so we know exactly what we have and where. Our nest and egg collections are the most comprehensive archive of information on bird breeding in the world. When I came here about 20 years ago, the nest collection was rarely used and we didn’t know how many examples of extinct and endangered species we had. I’ve spent a lot of time and effort cataloguing and understanding these particular 129 nests, 40 of which belong to extinct birds such as the Laysan crake (Zapornia palmeri) and the Aldabra brush warbler (Nesillas aldabrana).We have up to 300,000 sets of eggs. I am holding four dunlin (Calidris alpina) eggshells, collected in 1952 in Ireland. They were donated to the Wildfowl & Wetlands Trust, a UK conservation charity, which gave them to us as part of a larger collection.I have been interested in birds and natural history since childhood, and my mother used to take me to the Royal Museum of Scotland (now the National Museum of Scotland) in Edinburgh. After graduating in biological sciences from Edinburgh Napier University, I volunteered at the museum before getting my first paid museum job.When researchers want to access the collections, I check that we have specimens relevant to their research, discuss exactly what they intend to do and work with them to minimize the risk of damage. Although I want our collections to result in robust science, they must be preserved.

    Nature 597, 586 (2021)
    doi: https://doi.org/10.1038/d41586-021-02529-z

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    Aligning aquatic foods and public health

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    Silence and reduced echolocation during flight are associated with social behaviors in male hoary bats (Lasiurus cinereus)

    Bat capture, handling, and tag attachment were carried out in accordance with guidelines of American Society of Mammologists33 under permit from the California Department of Fish and Wildlife (# SC-002911). Experimental methods were approved by the Institutional Animal Care and Use Committee of the USDA Forest Service (IACUC 2017-014). We captured bats using 2.6-m high mist nets in a triple-high configuration. We measured forearm length and mass and determined species, age, sex, and reproductive status for each captured individual.We used Vesper Pipistrelle on-board audio-recording devices with an accelerometer (ASD Tech, Haifa Israel) to quantify bat movement throughout the duration of attachment. We used the smallest possible battery (0.5 g) which was sufficient to allow a 3-h recording period on the first night and up to a 4-h recording period on the second night. Tags were programmed to record for 10 s once every 3 min from 23:00 to 02:00 on the first night and for 10 s once every minute from 19:00 to 23:00 on the second night. We recovered tags from bats tagged between September 28th and October 7th. Sunset was at 19:02 on September 29th and 18:47 on October 8th. Unfortunately, the timing mechanism on the tags malfunctioned some of the time, causing only some of the recordings to have synchronous audio and accelerometer data (See Results).We attached Holohil LB-2X VHF transmitter (0.27 g) to the audio tags so we could locate the device once it detached from the bats. We coated the entire tag package (except the microphone opening) with liquid silicone followed by a latex sleeve covering to provide protection from the environment. The total tag package had a mass of 2.9 g which represented 10.6–12.5% of the mass of the bat. Several studies conducted in flight tents and in the field have shown no adverse consequences of payloads up to 15% for short duration deployments16,34. The diversity of natural behaviors that we observed, including prey pursuit, conspecific interaction, and extended flight over multiple nights indicates that hoary bats are capable fliers with this payload, however we cannot rule out the possibility that tags altered the behaviors that were observed.We attached tags to the posterior dorsum of bats using latex surgical adhesive (Torbot Liquid Bonding Cement, Torbot Group Inc. Cranston, Rhode Island). We used the minimum quantity of adhesive that we estimated would be necessary for tags to remain affixed to bats for 2 nights. We recovered tags by using ground- and aircraft-based VHF telemetry to determine the general location of the shed tag, followed by homing in on the VHF signal using ground-based telemetry. Final recovery of tags was achieved using visual searches of the ground.Microphone calibrationWe calibrated on-board microphones to determine the minimum sound pressure level (SPL) at which we could reliably detect micro calls. We did this by broadcasting a series of micro calls from an Avisoft (Glienicke/Nordbahn, Germany) Scanspeak ultrasonic speaker to the on-board tags. The series of micro calls consisted of a single high-quality micro call that was broadcast 30 times with each successive call being 3 dB lower in SPL. The absolute intensity of the broadcast was calibrated by broadcasting the same signal to a G.R.A.S (Holte, Denmark) 40DP 1/8″ microphone, which itself was calibrated with a G.R.A.S 42AB sound calibrator. For both the calibration of the sound playback and the broadcasts to the on-board microphone, the microphones were placed 10 cm from the speaker. We repeated this procedure three times for each of three microphones that had been recovered from the bats and determined the SPL of the lowest amplitude micro call that could be detected on all nine broadcasts. This SPL was used as the minimum detectable level at which our microphones could detect micro calls.Data processingDetermining whether bats are flyingWe used custom MATLAB (Natick, MA) scripts to analyze ultrasound and accelerometer recordings. We first determined whether bats were in flight for each recording. Unfortunately, we were only able to record simultaneous accelerometer and acoustic data for 364 out of 2241 recordings. For these recordings, we independently classified each file as flight or no flight using only the accelerometer data and only the audio data. Accelerometer recordings showed clear and prominent wingbeat oscillations in the dorsoventral, or Z-axis (Fig. S2A). One observer used a custom program (AccelVis) to visualize and manually classify all accelerometer files. We also quantified the magnitude of wingbeat oscillations by measuring the root-mean-square magnitude of signals after applying a high-pass filter of 4 Hz (Bats used wingbeat frequencies of approximately 8 Hz).A different observer classified all audio recordings as flight or no flight based on the presence or absence of low-frequency wind noise generated by the relative motion of the bats flying through the air (Fig. S2). The Individuals conducting the audio and acceleration analyses were blind to one another’s data. As with the accelerometer data, we analyzed all files both qualitatively and quantitatively. For the qualitative analysis, a user visualized files using a custom program (AudioBrowser; available with all data files as supplementary data) and noted presence or absence of low-frequency wind noise. We also quantified this wind noise by measuring the RMS magnitude of signals after applying a 1-Hz low pass filter. This resulted in a distinct bimodal distribution of low frequency magnitudes that corresponded to no wind and wind conditions with the two peaks being separated by approximately 30 dB. A small number of files ( 5 s). This 5 s threshold is twice the longest pulse interval recorded for echolocation calls (Supplementary Information), and therefore represents a conservative threshold for identifying silent periods.High-intensity calls could be identified by their consistently high signal levels. For recordings where no calls were initially detected, the observer made a second examination of the recording using a custom 55–90 kHz bandpass filter setting that highlights micro calls (Fig. 1D). A second observer also examined all files where either no calls or micro calls were detected by the first observer to confirm classification. Recordings were processed both by visualization of spectrograms and by listening to slowed-down recordings through headphones.Hoary bat feeding buzzes have a characteristic pattern involving a rapid increase in calling rate, and progressively decreasing call intensity (Fig. 1B)35,36. In contrast, social interactions involve prolonged (often several seconds) high-intensity echolocation calls produced at a high rate (e.g., 50–100 Hz) with a second bat also producing echolocation calls at a relatively high calling rate14. Echolocation calls of “other” bats (which could be present in any of the recordings) could be distinguished from the calls of the bat with the tag because they were typically recorded at a much lower intensity levels that increased and decreased, presumably as the other bat approached and then withdrew from the focal bat and were temporally out of phase with calling rate of the tagged bat. Calls classified as “other bat” also had lower calling rates compared to social interactions.Statistical analysisAcoustic recordings were organized by individual bat (Table 1) and by time of night (Fig. 2). To determine if bats exhibited consistent differences in the use of high-intensity echolocation, we measured the proportion of recordings including high-intensity echolocation for each bat night. Initial analysis of the data indicated that bats produced high-intensity echolocation during either most or all of the recordings (96–100%, including feeding buzzes) or at a considerably lower rate ( 96%) or low ( More

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    Physiological responses of Agriophyllum squarrosum and Setaria viridis to drought and re-watering

    Chlorophyll plays an important part in the assimilation, transfer and conversion of light energy during photosynthesis. Its content is therefore closely related to the carbon fixation efficiency of photosynthesis and, because photosynthesis provides the energy source for metabolic responses, plays an important role in the drought resistance of plants. Chlorophyll fluorescence is often used to analyze photosynthesis efficiency under stress1. Fm is the fluorescence output when the reaction center of PSII is completely closed, and therefore reflects the maximum electron transfer through PSII40. Fv/Fm represents the energy conversion efficiency of PSII reactions, and can be used to measure the degree of external stress41.The chlorophyll content and Fm of A. squarrosum first increased and then decreased under moderate and severe drought, indicating that A. squarrosum adjusted its energy capture during the early stage of drought, and because electron transfer was relatively stable, normal photosynthesis was maintained. As stress intensified during prolonged drought, chlorophyll degradation accelerated and electron transfer through PSII slowed, which was similar to the effect of drought stress on chlorophyll of A. halodendron1. On 1 August, when the drought treatments began, the leaves of A. squarrosum in the control became noticeably yellow and slightly wilted, and the chlorophyll content and Fm were lower than those in the drought treatments. After re-watering, the chlorophyll content and Fm of A. squarrosum decreased, but they increased with increasing drought intensity. There is a limit to plant demand for water, and both too much and too little water are not conducive to plant growth. As a pioneer species during vegetation succession in sandy land, A. squarrosum is a xerophyte31. The soil moisture content in the control was higher than its requirements, and its photosynthesis was obviously adversely affected by controlling the water content at a higher level than the plants required. There was a significant positive correlation between Fv/Fm and RWC of the two plants, which indicated that water deficit was the main reason for the decrease of Fv/Fm. The chlorophyll fluorescence of A. squarrosum could maintain higher photosynthetic performance under drought stress because of its stronger water holding capacity than that of S. viridis. For A. squarrosum, Fv/Fm decreased with increasing drought duration and intensity. This is because drought reduced the electron transfer capacity of PSII and photochemical activity, leading to excessive accumulation of excitation energy, and adversely affecting photosynthesis. Fv/Fm increased after re-watering on 8 August, when the reduction of stress slowed the inhibition of photosynthesis by drought, by decreasing the inhibition of photosynthesis.For S. viridis, the chlorophyll content, Fm and Fv/Fm decreased with increasing drought duration and intensity, indicating that drought stress hindered the biosynthesis of chlorophyll, and that chlorophyll decomposition increased, leading to decreased chlorophyll content. At the same time, drought resulted in the decrease of PSII photochemical transformation efficiency and photosynthetic activity, and the damage of PSII receptor, which contributed to the damage of photosynthesis and the decrease of electron transfer ability. Fm and Fv/Fm of S. viridis increased after re-watering on 8 August, showing that rehydration relieved the drought stress. In addition, Fv/Fm increased and Fm decreased after re-watering on 14 August, suggesting that the damage to PSII was mitigated by rehydration, but the electron transfer in the PSII reaction center continued to be slower than normal. The chlorophyll content of S. viridis did not return to normal after re-watering, indicating that the leaves of S. viridis were damaged by both prolonged and severe drought stress and that chlorophyll synthesis was significantly affected1.The cell membrane is both a dynamic barrier between the cell interior and its surroundings, and a channel for the exchange of substance and information with its environment42. In particular, it controls water transport between the cell and its environment, leading to changes in RWC. RWC can be used to indicate the degree of dehydration of cells and assess the level of drought suffered by plants43. Under drought stress, the loss of water in plants is directly related to the stability of the cell membrane, and a stable cell membrane is the most basic requirement for maintaining sufficient water to support the cell’s physiological functions. ROS are produced in large quantities under stress, and this can trigger or exacerbate peroxidation of membrane lipids to produce malondialdehyde. Malondialdehyde can damage the membrane and functional molecules such as proteins and nucleic acids in cells, leading to damage or destruction of the membrane’s structure and functions. This, in turn, can increase the permeability of the membrane, leading to growth inhibition or even death. Therefore, changes in membrane permeability and the malondialdehyde content can reflect the degree of membrane lipid peroxidation and cell damage under stress1,3,32. It is consistent with our correlation analysis that RWC of the two species is negatively correlated with malondialdehyde and membrane permeability, and the correlation between RWC and membrane permeability in S. viridis is significant.In A. squarrosum, membrane permeability in the control on 1 August was significantly less than those under moderate and severe drought, but the malondialdehyde content did not differ among the treatments. The change of membrane permeability may have resulted from degreasing of membrane lipids and destruction of the membrane structure after phospholipid dissociation44. From 1 to 13 August, malondialdehyde content of A. squarrosum in the control first decreased and then increased, while membrane permeability increased continuously, indicating that membrane lipid peroxidation was significantly alleviated in wet soil after short-term drought. In contrast, the severe water deficit during the late stage of drought increased peroxidation of membrane lipids and malondialdehyde accumulation, suggesting that the cell membranes in the control had been damaged during the drought process. The malondialdehyde content and membrane permeability of A. squarrosum increased in the control after rehydration on 8 August, but decreased after rehydration on 14 August. This suggests that rehydration during the early stages of drought can exacerbate the peroxidation of membrane lipids and damage the cell membrane, but that rehydration during the late stages of drought mitigated the stress and eased the damage. Many studies showed that membrane permeability and the malondialdehyde content increased synchronously under stress1, but this contradicts our results for A. squarrosum in the control. This may be because the high soil moisture content in the control was not conducive to normal growth of this xerophyte. That is, long-term natural selection in the species’ arid sandy environment would lead to continuous adaptation to its environment, allowing A. squarrosum to become widely distributed in the mobile dunes of the Horqin sandy land45. With increasing drought duration, the malondialdehyde content and membrane permeability of A. squarrosum increased under both moderate and severe drought, indicating that the accumulation of malondialdehyde after drought stress damaged cell membrane and increased its permeability. The RWC values of A. squarrosum in the control were similar, but the membrane permeability fluctuated greatly. This can be due to more than adequate amount of irrigation.Setaria viridis is a late-successional species, and showed different responses to drought. With increasing drought duration and intensity, RWC of S. viridis decreased, while MDA and membrane permeability increased simultaneously. The results indicated that the early occurrence of water stress and membrane peroxidation in S. viridis under stress was one of the main physiological reasons for its inferior drought tolerance to A. squarrosum. Moreover, the damage degree of plants under drought stress should take into account not only the change of membrane permeability, but also the degree of membrane peroxidation and the ability of plant cell membrane to tolerate membrane lipid peroxidation. The chlorophyll content, Fm and Fv/Fm of S. viridis decreased with increasing drought duration and severity, and Fv/Fm of S. viridis was significantly negatively correlated with membrane permeability, which increased with increasing drought stress. This indicated that membrane lipid peroxidation and the accumulation of ROS under drought stress damaged the membrane and inhibited photosynthesis. Re-hydration of S. viridis increased RWC on both dates and in all drought treatments. This was accompanied by decreased malondialdehyde content, particularly after the 14 August re-watering, and by decreased membrane permeability. Rehydration reduced membrane lipid peroxidation, but it did not return to the control level, showing that drought caused a certain degree of damage that may be permanent or that may take some time to be repaired3.Stress can disrupt the balance of ROS metabolism in aerobic plants. When the concentrations of ROS are too high, peroxidation of membrane lipids and the equilibrium for exchanges of cell materials is also disrupted, resulting in a series of physiological and metabolic disorders. To counteract these disorders, plants have evolved protective enzymes during long-term evolution. The enzymes can eliminate O2-, H2O2, OH- and O- and reduce the damage they cause to the plant46. The changes in antioxidant enzyme activities of both species differed under drought stress. SOD played an active role during initial protection against membrane lipid peroxidation and its activity in A. squarrosum increased gradually during the drought. Under natural drought condition, SOD activities of the two species increased gradually, indicating that SOD activity was easily induced by drought stress. At the end of natural drought, the three enzymes of A. squarrosum maintained high level, and the combination of enzymes could resist drought stress, while only POD and SOD in S. viridis were enhanced to alleviate membrane lipid peroxidation. This transformation of the coordination of enzyme activity may be an important physiological mechanism of drought tolerance of A. squarrosum was stronger than that of S. viridis under severe drought. On 7 August, the peroxidase and catalase activities decreased in the control. Because ROS are a metabolism by-product of photorespiration, photosynthesis was inhibited by short-term drought, and the decreased accumulation of ROS caused by protective antioxidant enzymes reduced membrane lipid peroxidation by decreasing levels of malondialdehyde47. On 7 and 13 August, the activities of protective enzymes in A. squarrosum under moderate and severe drought were greater than that in the control. Drought stress led to the accumulation of ROS, and increased membrane lipid peroxidation, as reflected by the malondialdehyde content. At the same time, the accumulated ROS also stimulated the antioxidant enzyme protection system to continuously increase the activities of enzymes, so as to maintain balance of ROS48.Setaria viridis showed different responses. From 1 to 13 August, its peroxidase activity first decreased and then increased, but catalase activity showed the opposite pattern, and SOD activity increased gradually, indicating the existences of coordination among these enzymes under drought stress49. When catalase activity weakened, SOD and peroxidase activities compensated for this weakness to scavenge more ROS and mitigate cell membrane damage. The catalase activity in S. viridis remained less than 50 U g-1 DW min-1 throughout the study. After rehydration, catalase activity in the control was significantly greater than those under moderate and severe drought. There was a close relationship between Fv/Fm and catalase activity in S. viridis. It is possible that the enzyme must be contributing through ROS scavenging. Some of the antioxidant enzymes of both species did not recover after rehydration, which may be related to the possibility that in xerophytes, rehydration did not immediately improve physiological metabolism. It is possible that their antioxidant enzyme systems were so damaged that they would take longer than our study period to return to normal levels, and our samples were collected1 day after rehydration. More

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    Host selection pattern and flavivirus screening of mosquitoes in a disturbed Colombian rainforest

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