Stefansson, S. O., Björnsson, B. T., Ebbesson, L. O. E. & McCormick, S. D. Smoltification. In Fish Larval Physiology (eds Finn, R. N. & Kapoor, B. G.) 639–681 (CRC Press, 2020).Chapter
Google Scholar
Kaleka, A. S., Kaur, N. & Bali, G. K. Larval development and molting. In Edible Insects (ed. Mikkola, H.) 17 (IntechOpen, 2019).
Google Scholar
Butler, L. K. & Rohwer, V. G. Feathers and molt. in Ornithology: Foundation, Analysis, and Application (eds Morrison, M. L. et al.) 242–270 (JHU Press, 2018).
Google Scholar
Swaddle, J. P., Witter, M. S., Cuthill, I. C., Budden, A. & McCowen, P. Plumage condition affects flight performance in common starlings: Implications for developmental homeostasis, abrasion and moult. J. Avian Biol. 27, 103–111 (1996).Article
Google Scholar
Norris, D. R., Marra, P. P., Montgomerie, R., Kyser, T. K. & Ratcliffe, L. M. Reproductive effort, molting latitude, and feather color in a migratory songbird. Science 306, 2249–2250 (2004).Article
ADS
CAS
Google Scholar
Delhey, K., Peters, A. & Kempenaers, B. Cosmetic coloration in birds: Occurrence, function, and evolution. Am. Nat. 169, S145–S158 (2007).Article
Google Scholar
Tomotani, B. M. & Muijres, F. T. A songbird compensates for wing molt during escape flights by reducing the molt gap and increasing angle of attack. J. Exp. Biol. 222, 195396 (2019).Article
Google Scholar
Galván, I., Negro, J. J., Rodriguez, A. & Carrascal, L. M. On showy dwarfs and sober giants: Body size as a constraint for the evolution of bird plumage colouration. Acta Ornithol. 48, 65–80 (2013).Article
Google Scholar
Speakman, J. R. & Król, E. Maximal heat dissipation capacity and hyperthermia risk: Neglected key factors in the ecology of endotherms. J. Anim. Ecol. 79, 726–746 (2010).
Google Scholar
Wolf, B. O. & Walsberg, G. E. The role of the plumage in heat transfer processes of birds. Am. Zool. 40, 575–584 (2000).
Google Scholar
Berthold, P. & Querner, U. Genetic basis of moult, wing length, and body weight in a migratory bird species, Sylvia atricapilla. Experientia 38, 801–802 (1982).Article
Google Scholar
Gwinner, E., Neusser, V., Engl, D., Schmidl, D. & Bals, L. Haltung, Zucht und Eiaufzucht afrikanischer und europäischer Schwarzkehlchen Saxicola torquata. Gefied. Welt 111, 118–120 (1987).
Google Scholar
Berthold, P. & Querner, U. Microevolutionary aspects of bird migration based on experimental results. Isr. J. Ecol. Evol. 41, 377–385 (1995).
Google Scholar
Helm, B. & Gwinner, E. Timing of postjuvenal molt in African (Saxicola torquata axillaris) and European (Saxicola torquata rubicola) stonechats: Effects of genetic and environmental factors. Auk 116, 589–603 (1999).Article
Google Scholar
Helm, B. & Gwinner, E. Timing of molt as a buffer in the avian annual cycle. Acta Zool. Sin. 52, 703–706 (2006).
Google Scholar
Rohwer, S., Ricklefs, R. E., Rohwer, V. G. & Copple, M. M. Allometry of the duration of flight feather molt in birds. PLoS Biol. 7, e1000132 (2009).Article
Google Scholar
Jenni, L. & Winkler, R. The Biology of Moult in Birds (Bloomsbury Publishing, 2020).
Google Scholar
Tonra, C. M. & Reudink, M. W. Expanding the traditional definition of molt-migration. Auk Ornithol. Adv. 135, 1123–1132 (2018).
Google Scholar
Rohwer, S., Butler, L. K., Froehlich, D. R., Greenberg, R. & Marra, P. P. Ecology and demography of east–west differences in molt scheduling of Neotropical migrant passerines. Birds Two Worlds Ecol. Evol. Migr. (R. Greenb. PP Marra, Eds.). Johns Hopkins Univ. Press. Balt. Maryl., 87–105 (2005).Bensch, S., Åkesson, S. & Irwin, D. E. The use of AFLP to find an informative SNP: Genetic differences across a migratory divide in willow warblers. Mol. Ecol. 11, 2359–2366 (2002).Article
CAS
Google Scholar
Ruegg, K. Genetic, morphological, and ecological characterization of a hybrid zone that spans a migratory divide. Evol. Int. J. Org. Evol. 62, 452–466 (2008).Article
Google Scholar
Delmore, K. E., Fox, J. W. & Irwin, D. E. Dramatic intraspecific differences in migratory routes, stopover sites and wintering areas, revealed using light-level geolocators. Proc. R. Soc. B Biol. Sci. 279, 4582–4589 (2012).Article
Google Scholar
Delmore, K. E. et al. Individual variability and versatility in an eco-evolutionary model of avian migration. Proc. R. Soc. B 287, 20201339 (2020).Article
Google Scholar
Procházka, P. et al. Across a migratory divide: divergent migration directions and non-breeding grounds of Eurasian reed warblers revealed by geolocators and stable isotopes. J. Avian Biol. 49, 012516 (2018).Article
Google Scholar
Bensch, S., Grahn, M., Müller, N., Gay, L. & Åkesson, S. Genetic, morphological, and feather isotope variation of migratory willow warblers show gradual divergence in a ring. Mol. Ecol. 18, 3087–3096 (2009).Article
Google Scholar
Rohwer, S. & Irwin, D. E. Molt, orientation, and avian speciation. Auk 128, 419–425 (2011).Article
Google Scholar
Pageau, C., Sonnleitner, J., Tonra, C. M., Shaikh, M. & Reudink, M. W. Evolution of winter molting strategies in European and North American migratory passerines. Ecol. Evol. 11, 13247–13258 (2021).Article
Google Scholar
Butler, L. K., Rohwer, S. & Rogers, M. Prebasic molt and molt-related movements in Ash-throated Flycatchers. Condor 108, 647–660 (2006).Article
Google Scholar
Barry, J. H., Butler, L. K., Rohwer, S. & Rohwer, V. G. Documenting molt-migration in Western Kingbird (Tyrannus verticalis) using two measures of collecting effort. Auk 126, 260–267 (2009).Article
Google Scholar
Hobson, K. A. & Wassenaar, L. I. Linking breeding and wintering grounds of neotropical migrant songbirds using stable hydrogen isotopic analysis of feathers. Oecologia 109, 142–148 (1996).Article
ADS
CAS
Google Scholar
Hobson, K. A. & Wassenaar, L. I. Tracking Animal Migration with Stable Isotopes (Academic Press, 2018).
Google Scholar
Rubenstein, D. R. & Hobson, K. A. From birds to butterflies: Animal movement patterns and stable isotopes. Trends Ecol. Evol. 19, 256–263 (2004).Article
Google Scholar
Bearhop, S. et al. Assortative mating as a mechanism for rapid evolution of a migratory divide. Science 310, 502–504 (2005).Article
ADS
CAS
Google Scholar
Eppig, J. T. et al. The mouse genome database (MGD): Comprehensive resource for genetics and genomics of the laboratory mouse. Nucleic Acids Res. 40, D881–D886 (2012).Article
CAS
Google Scholar
Contina, A., Bridge, E. S. & Kelly, J. F. Exploring novel candidate genes from the mouse genome informatics database: Potential implications for avian migration research. Integr. Zool. 11, 240 (2016).Article
Google Scholar
Yang, J. et al. Common SNPs explain a large proportion of the heritability for human height. Nat. Genet. 42, 565–569 (2010).Article
CAS
Google Scholar
Thompson, C. W. Is the Painted Bunting actually two species? Problems determining species limits between allopatric populations. Condor 93, 987–1000 (1991).Article
Google Scholar
Contina, A., Bridge, E. S., Seavy, N. E., Duckles, J. M. & Kelly, J. F. Using geologgers to investigate bimodal isotope patterns in Painted Buntings (Passerina ciris). Auk 130, 265 (2013).Article
Google Scholar
Besozzi, E., Chew, B., Allen, D. C. & Contina, A. Stable isotope analysis of an aberrant Painted Bunting (Passerina ciris) feather suggests post-molt movements. Wilson J. Ornithol. 133, 151 (2021).Article
Google Scholar
Sharp, A. et al. Spatial and Temporal Scale-Dependence of the Strength of Migratory Connectivity in a North American Passerine. https://assets.researchsquare.com/files/rs-1483049/v1/72236b63-952d-4870-89e7-461056b8625b.pdf?c=1648893558 (2022).Pyle, P. et al. Temporal, spatial, and annual variation in the occurrence of molt-migrant passerines in the Mexican monsoon region. Condor 111, 583–590 (2009).Article
Google Scholar
Bridge, E. S., Fudickar, A. M., Kelly, J. F., Contina, A. & Rohwer, S. Causes of bimodal stable isotope signatures in the feathers of a molt-migrant songbird. Can. J. Zool. 89, 951 (2011).Article
CAS
Google Scholar
Seutin, G., White, B. N. & Boag, P. T. Preservation of avian blood and tissue samples for DNA analyses. Can. J. Zool. 69, 82–90 (1991).Article
CAS
Google Scholar
Ali, O. A. et al. RAD capture rapture: Flexible and efficient sequence-based genotyping. Genetics 202, 389–400 (2016).Article
CAS
Google Scholar
Contina, A. et al. Characterization of SNP markers for the Painted Bunting (Passerina ciris) and their relevance in population differentiation and genome evolution studies. Conserv. Genet. Resour. 11, 5–10 (2019).Article
ADS
Google Scholar
Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A. & Cresko, W. A. Stacks: An analysis tool set for population genomics. Mol. Ecol. 22, 3124–3140 (2013).Article
Google Scholar
Parker, P., Li, B., Li, H. & Wang, J. The genome of Darwin’s Finch (Geospiza fortis). Gigascience 10, 100040 (2012).
Google Scholar
Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357–359 (2012).Article
CAS
Google Scholar
Van der Auwera, G. A. et al. From FastQ data to high-confidence variant calls: The genome analysis toolkit best practices pipeline. Curr. Protoc. Bioinform. 43, 1–33 (2013).
Google Scholar
McKenna, A. et al. The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297–1303 (2010).Article
CAS
Google Scholar
Danecek, P. et al. The variant call format and VCFtools. Bioinformatics 27, 2156–2158 (2011).Article
CAS
Google Scholar
Anderson, E. genoscapeRtools: Tools for Building Migratory Bird Genoscapes (2019).Purcell, S. et al. PLINK: A tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559–575 (2007).Article
CAS
Google Scholar
Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655–1664 (2009).Article
CAS
Google Scholar
Alexander, D. H. & Lange, K. Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC Bioinform. 12, 246 (2011).Article
Google Scholar
Francis, R. M. pophelper: An R package and web app to analyse and visualize population structure. Mol. Ecol. Resour. 17, 27–32 (2017).Article
CAS
Google Scholar
Chew, B., Kelly, J. & Contina, A. Stable isotopes in avian research: a step by step protocol to feather sample preparation for stable isotope analysis of carbon (δ13C), nitrogen (δ15N), and hydrogen (δ2H). Version 1.1. https://doi.org/10.17504/protocols.io.z2uf8ew (2019).Wassenaar, L. I. & Hobson, K. A. Comparative equilibration and online technique for determination of non-exchangeable hydrogen of keratins for use in animal migration studies. Isotopes Environ. Health Stud. 39(3), 211–217 (2003).Article
CAS
Google Scholar
Bowen, G. J., Wassenaar, L. I. & Hobson, K. A. Global application of stable hydrogen and oxygen isotopes to wildlife forensics. Oecologia 143, 337–348 (2005).Article
ADS
Google Scholar
R Core Team: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, 2021).Wassenaar, L. I. & Hobson, K. A. Stable-hydrogen isotope heterogeneity in keratinous materials: Mass spectrometry and migratory wildlife tissue subsampling strategies. Rapid Commun. Mass Spectrom. 20, 2505–2510 (2006).Article
ADS
CAS
Google Scholar
Zhou, X., Carbonetto, P. & Stephens, M. Polygenic modeling with Bayesian sparse linear mixed models. PLoS Genet. 9, e1003264 (2013).Article
CAS
Google Scholar
Guan, Y. & Stephens, M. Bayesian variable selection regression for genome-wide association studies and other large-scale problems. Ann. Appl. Stat. 5, 455 (2011).Article
MathSciNet
MATH
Google Scholar
Marchini, J., Cardon, L. R., Phillips, M. S. & Donnelly, P. The effects of human population structure on large genetic association studies. Nat. Genet. 36, 512–517 (2004).Article
CAS
Google Scholar
Browning, S. R. & Browning, B. L. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81, 1084–1097 (2007).Article
CAS
Google Scholar
Chaves, J. A. et al. Genomic variation at the tips of the adaptive radiation of Darwin’s finches. Mol. Ecol. 25, 5282–5295 (2016).Article
CAS
Google Scholar
Zhang, Y.-W. et al. mrMLM v4.0.2: An R platform for multi-locus genome-wide association studies. Genom. Proteom. Bioinform. 18, 481–487 (2020).Article
Google Scholar
Grabherr, M. G. et al. Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics 26, 1145–1151 (2010).Article
CAS
Google Scholar
Quinlan, A. R. & Hall, I. M. BEDTools: A flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841–842 (2010).Article
CAS
Google Scholar
Ellis, N., Smith, S. J. & Pitcher, C. R. Gradient forests: Calculating importance gradients on physical predictors. Ecology 93, 156–168 (2012).Article
Google Scholar
Hijmans, R. J., Cameron, S. E., Parra, J. L., Jones, P. G. & Jarvis, A. Very high resolution interpolated climate surfaces for global land areas. Int. J. Climatol. 25, 1965–1978 (2005).Article
Google Scholar
Anderson, E. C. snps2assays: Prepare SNP Assay Orders from ddRAD or RAD Loci (2015).Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754–1760 (2009).Article
CAS
Google Scholar
Patterson, N., Price, A. L. & Reich, D. Population structure and eigenanalysis. PLoS Genet. 2, e190 (2006).Article
Google Scholar
Price, A. L. et al. Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38, 904–909 (2006).Article
CAS
Google Scholar
Ruegg, K. et al. Ecological genomics predicts climate vulnerability in an endangered southwestern songbird. Ecol. Lett. 21, 1085–1096 (2018).Article
Google Scholar
Bay, R. A. et al. Genomic signals of selection predict climate-driven population declines in a migratory bird. Science 359, 83–86 (2018).Article
ADS
CAS
Google Scholar
Hedenström, A. Adaptations to migration in birds: Behavioural strategies, morphology and scaling effects. Philos. Trans. R. Soc. B Biol. Sci. 363, 287–299 (2008).Article
Google Scholar
Buehler, D. M. & Piersma, T. Travelling on a budget: Predictions and ecological evidence for bottlenecks in the annual cycle of long-distance migrants. Philos. Trans. R. Soc. B Biol. Sci. 363, 247–266 (2008).Article
Google Scholar
Schieltz, P. C. & Murphy, M. E. The contribution of insulation changes to the energy cost of avian molt. Can. J. Zool. 75, 396–400 (1997).Article
Google Scholar
Carling, M. D. & Thomassen, H. A. The role of environmental heterogeneity in maintaining reproductive isolation between hybridizing Passerina (Aves: Cardinalidae) buntings. Int. J. Ecol. 2012, 1–11 (2012).Article
Google Scholar
Irwin, D. E. Incipient ring speciation revealed by a migratory divide. Mol. Ecol. 18, 2923–2925 (2009).Article
Google Scholar
Thomas, D. W., Blondel, J., Perret, P., Lambrechts, M. M. & Speakman, J. R. Energetic and fitness costs of mismatching resource supply and demand in seasonally breeding birds. Science 291, 2598–2600 (2001).Article
ADS
CAS
Google Scholar
Rohwer, V. G., Rohwer, S. & Ortiz-Ramirez, M. F. Molt biology of resident and migrant birds of the monsoon region of west Mexico. Ornitol. Neotrop. 20, 565–584 (2009).
Google Scholar
Bensch, S., Andersson, T. & Åkesson, S. Morphological and molecular variation across a migratory divide in willow warblers, Phylloscopus trochilus. Evolution 53, 1925–1935 (1999).Article
Google Scholar
Turbek, S. P., Scordato, E. S. C. & Safran, R. J. The role of seasonal migration in population divergence and reproductive isolation. Trends Ecol. Evol. 33, 164–175 (2018).Article
Google Scholar
Scordato, E. S. C. et al. Migratory divides coincide with reproductive barriers across replicated avian hybrid zones above the Tibetan Plateau. Ecol. Lett. 23, 231–241 (2020).Article
Google Scholar
Battey, C. J. et al. A migratory divide in the Painted Bunting (Passerina ciris). Am. Nat. 191, 259–268 (2018).Article
CAS
Google Scholar
Contina, A. et al. Genetic structure of the Painted Bunting and its implications for conservation of migratory populations. Ibis 161, 372 (2019).Article
Google Scholar
Butler, L. K. The grass is always greener: Do monsoon rains matter for molt of the Vermilion Flycatcher (Pyrocephalus rubinus)? Auk 130, 297–307 (2013).Article
Google Scholar
Turbek, S. P. et al. A migratory divide spanning two continents is associated with genomic and ecological divergence. Evolution 76, 722 (2022).Article
Google Scholar
Dietz, M. W., Daan, S. & Masman, D. Energy requirements for molt in the kestrel Falco tinnunculus. Physiol. Zool. 65, 1217–1235 (1992).Article
Google Scholar
Vézina, F., Gustowska, A., Jalvingh, K. M., Chastel, O. & Piersma, T. Hormonal correlates and thermoregulatory consequences of molting on metabolic rate in a northerly wintering shorebird. Physiol. Biochem. Zool. 82, 129–142 (2009).Article
Google Scholar
Bazzi, G. et al. Candidate genes have sex-specific effects on timing of spring migration and moult speed in a long-distance migratory bird. Curr. Zool. 63, 479–486 (2017).CAS
Google Scholar
Busby, L. et al. Sonic hedgehog specifies flight feather positional information in avian wings. Development 147, 188821 (2020).Article
Google Scholar
Eichberger, T. et al. GLI2-specific transcriptional activation of the bone morphogenetic protein/Activin antagonist Follistatin in human epidermal cells. J. Biol. Chem. 283, 12426–12437 (2008).Article
CAS
Google Scholar
Matzuk, M. M. et al. Multiple defects and perinatal death in mice deficient in follistatin. Nature 374, 360–363 (1995).Article
ADS
CAS
Google Scholar
Patel, K., Makarenkova, H. & Jung, H.-S. The role of long range, local and direct signalling molecules during chick feather bud development involving the BMPs, follistatin and the Eph receptor tyrosine kinase Eph-A4. Mech. Dev. 86, 51–62 (1999).Article
CAS
Google Scholar
Nakamura, M. et al. Control of pelage hair follicle development and cycling by complex interactions between follistatin and activin. FASEB J. 17, 1–22 (2003).Article
MathSciNet
Google Scholar
Pays, L., Charvet, I., Hemming, F. J. & Saxod, R. Close link between cutaneous nerve pattern development and feather morphogenesis demonstrated by experimental production of neo-apteria and ectopic feathers: Implication of chondroitin sulphate proteoglycans and other matrix molecules. Anat. Embryol. 195, 457–466 (1997).Article
CAS
Google Scholar
Pyle, P., Saracco, J. F. & DeSante, D. F. Evidence of widespread movements from breeding to molting grounds by North American landbirds. Auk Ornithol. Adv. 135, 506–520 (2018).
Google Scholar
De Mita, S. et al. Detecting selection along environmental gradients: Analysis of eight methods and their effectiveness for outbreeding and selfing populations. Mol. Ecol. 22, 1383–1399 (2013).Article
Google Scholar
Lotterhos, K. E. & Whitlock, M. C. Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests. Mol. Ecol. 23, 2178–2192 (2014).Article
Google Scholar
Frichot, E., Schoville, S. D., de Villemereuil, P., Gaggiotti, O. E. & François, O. Detecting adaptive evolution based on association with ecological gradients: Orientation matters!. Heredity (Edinb.) 115, 22–28 (2015).Article
CAS
Google Scholar
Trivedi, A. K. et al. Temperature alters the hypothalamic transcription of photoperiod responsive genes in induction of seasonal response in migratory redheaded buntings. Mol. Cell. Endocrinol. 493, 110454 (2019).Article
CAS
Google Scholar More